BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00027982
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   132   2e-29
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   132   2e-29
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   123   1e-26
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   118   6e-25
ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D sub...   116   2e-24

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D
           subunit 1-like [Vitis vinifera]
          Length = 1560

 Score =  132 bits (333), Expect = 2e-29
 Identities = 71/130 (54%), Positives = 87/130 (66%)
 Frame = +1

Query: 4   VQIIDGEVIXXXXXXXXXXXXKGNFFHSLLNHCQGEFLDFLHAAQGVLCEWLTMRGLSVS 183
           V+I DGE+I             GN F SL+  CQG+ LDFL+AAQ VLCEWL+MRGLSVS
Sbjct: 597 VRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVS 656

Query: 184 LADMYLSSDSHARKNMIDEVCCGLREAEQISHVKLFMVDSNLNFLTGSHDESETAREFGV 363
           L+D+YLSSDS +RKNMIDEV CGL  AEQ  H K  +VDS+ NFL GS + ++      V
Sbjct: 657 LSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDV 716

Query: 364 EHTLYDRQTS 393
           +   Y+RQ S
Sbjct: 717 QSLWYERQGS 726


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  132 bits (333), Expect = 2e-29
 Identities = 71/130 (54%), Positives = 87/130 (66%)
 Frame = +1

Query: 4   VQIIDGEVIXXXXXXXXXXXXKGNFFHSLLNHCQGEFLDFLHAAQGVLCEWLTMRGLSVS 183
           V+I DGE+I             GN F SL+  CQG+ LDFL+AAQ VLCEWL+MRGLSVS
Sbjct: 567 VRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVS 626

Query: 184 LADMYLSSDSHARKNMIDEVCCGLREAEQISHVKLFMVDSNLNFLTGSHDESETAREFGV 363
           L+D+YLSSDS +RKNMIDEV CGL  AEQ  H K  +VDS+ NFL GS + ++      V
Sbjct: 627 LSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDV 686

Query: 364 EHTLYDRQTS 393
           +   Y+RQ S
Sbjct: 687 QSLWYERQGS 696


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  123 bits (309), Expect = 1e-26
 Identities = 61/130 (46%), Positives = 90/130 (69%)
 Frame = +1

Query: 4   VQIIDGEVIXXXXXXXXXXXXKGNFFHSLLNHCQGEFLDFLHAAQGVLCEWLTMRGLSVS 183
           V I +GE++              N F+SL+ H  G+ LD L+AAQ VLCEWL+MRGLSVS
Sbjct: 242 VCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNGGDTLDLLYAAQTVLCEWLSMRGLSVS 301

Query: 184 LADMYLSSDSHARKNMIDEVCCGLREAEQISHVKLFMVDSNLNFLTGSHDESETAREFGV 363
           L+D+Y+S+DS++R+NMIDEVC GL+EAE++S+++L M+  N +FL+G+ +ES+ +  F  
Sbjct: 302 LSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNKDFLSGNLEESKNSMGFDF 361

Query: 364 EHTLYDRQTS 393
           E     +Q S
Sbjct: 362 EFMSIMQQKS 371


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
           sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
           QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
           1-like [Cucumis sativus]
          Length = 1469

 Score =  118 bits (295), Expect = 6e-25
 Identities = 52/107 (48%), Positives = 79/107 (73%)
 Frame = +1

Query: 73  NFFHSLLNHCQGEFLDFLHAAQGVLCEWLTMRGLSVSLADMYLSSDSHARKNMIDEVCCG 252
           N F +L+ HC+G+ LD+L  AQGVLCEWL+ RGLSVSL+D+YLS DS++ +NM+D++ CG
Sbjct: 598 NLFQALIEHCEGKTLDYLRDAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCG 657

Query: 253 LREAEQISHVKLFMVDSNLNFLTGSHDESETAREFGVEHTLYDRQTS 393
           L+EAE+  ++K  MVDS+   L G+ ++++      VE  +Y++Q S
Sbjct: 658 LQEAEETCNLKQLMVDSHKEILIGNDEDNQHLLSIAVERLIYEKQKS 704


>ref|XP_003538711.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Glycine
           max]
          Length = 1461

 Score =  116 bits (291), Expect = 2e-24
 Identities = 61/130 (46%), Positives = 83/130 (63%)
 Frame = +1

Query: 4   VQIIDGEVIXXXXXXXXXXXXKGNFFHSLLNHCQGEFLDFLHAAQGVLCEWLTMRGLSVS 183
           V + DGE++              N F SL+ H QG+ L+FL+ AQ VLCEWL+M G SVS
Sbjct: 569 VVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLYTAQKVLCEWLSMTGFSVS 628

Query: 184 LADMYLSSDSHARKNMIDEVCCGLREAEQISHVKLFMVDSNLNFLTGSHDESETAREFGV 363
           L+D+YLSSDS+ARKNMI+E+  GL++AEQ  + K  ++D   +FL+GS  ESE A     
Sbjct: 629 LSDLYLSSDSYARKNMIEEIFYGLQDAEQACNFKQLLLDCYCDFLSGSIQESENAITVDA 688

Query: 364 EHTLYDRQTS 393
           +   Y+RQ S
Sbjct: 689 DRLNYERQIS 698