BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00027971
         (459 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containi...   207   9e-52
ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containi...   197   7e-49
emb|CBI28420.3| unnamed protein product [Vitis vinifera]              197   7e-49
ref|XP_002531691.1| pentatricopeptide repeat-containing protein,...   190   1e-46
ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containi...   122   2e-26

>ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449511814|ref|XP_004164061.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  207 bits (526), Expect = 9e-52
 Identities = 102/152 (67%), Positives = 125/152 (82%)
 Frame = +3

Query: 3   QFHALSVKTAALNNSSISCRLLSLYAQPKINNLNYARSVFDHIQQPTLFSWNTIIKCYVE 182
           Q HALS+KTA+LN+ S+S RLL+LYA P+INNL YA S+FD IQ+PTL SWN +IKCY+E
Sbjct: 33  QLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIE 92

Query: 183 NHRSHDALHLFEQLLSGSPYLPDHFTLPVVLKGCGRLCAVKEGEQIHGLVLKIGYGEDMF 362
           N RS+DA+ LF +LL    ++PD FTLP VLKGC RL A++EG+QIHGLVLKIG+G D F
Sbjct: 93  NQRSNDAIALFCKLLCD--FVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKF 150

Query: 363 VQSSLVSLYSKCRDIDSARKVFDRMSDKDLVS 458
           V SSLVS+YSKC +I+  RKVFDRM DKD+VS
Sbjct: 151 VLSSLVSMYSKCGEIELCRKVFDRMEDKDVVS 182



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 35/122 (28%), Positives = 64/122 (52%)
 Frame = +3

Query: 87  KINNLNYARSVFDHIQQPTLFSWNTIIKCYVENHRSHDALHLFEQLLSGSPYLPDHFTLP 266
           K  + N A+ +FD + + +L +WN++I  Y  N +   AL LFE +L      P++ T+ 
Sbjct: 254 KAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLR-EDISPNYTTIL 312

Query: 267 VVLKGCGRLCAVKEGEQIHGLVLKIGYGEDMFVQSSLVSLYSKCRDIDSARKVFDRMSDK 446
             +     + ++  G  +H  ++K G+  D  + + L+ +YSKC  + SA +VF  +  K
Sbjct: 313 GAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKK 372

Query: 447 DL 452
            L
Sbjct: 373 KL 374


>ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  197 bits (501), Expect = 7e-49
 Identities = 96/151 (63%), Positives = 118/151 (78%)
 Frame = +3

Query: 3   QFHALSVKTAALNNSSISCRLLSLYAQPKINNLNYARSVFDHIQQPTLFSWNTIIKCYVE 182
           Q HA S+KTA  N+  +S RLL+LY+ PKIN+L YARS+FD IQ+ +L  WNTIIKCYVE
Sbjct: 31  QLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVE 90

Query: 183 NHRSHDALHLFEQLLSGSPYLPDHFTLPVVLKGCGRLCAVKEGEQIHGLVLKIGYGEDMF 362
           N  SHD + LF +L+    YLPD+FTLP V+KGC RL  V+EG+QIHGL LKIG+G D+F
Sbjct: 91  NQFSHDGIVLFHELVH--EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 148

Query: 363 VQSSLVSLYSKCRDIDSARKVFDRMSDKDLV 455
           VQ SLV++YSKC +ID ARKVFD M DKD+V
Sbjct: 149 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVV 179



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
 Frame = +3

Query: 87  KINNLNYARSVFDHIQQPTLFSWNTIIKCYVENHRSHDALHLFEQLLS-GSPYLPDHFTL 263
           K  + + A  +F  +    L +WN +I  Y  N +  DA+ +F  +L  GS   P H TL
Sbjct: 252 KSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSR--PSHATL 309

Query: 264 PVVLKGCGRLCAVKEGEQIHGLVLKIGYGEDMFVQSSLVSLYSKCRDIDSARKVFDRMSD 443
             VL     L  + +G  IH  + K G+  D  + +SL+ +Y+KC  I+SA  VF  +  
Sbjct: 310 VSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQK 369

Query: 444 K 446
           K
Sbjct: 370 K 370


>emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  197 bits (501), Expect = 7e-49
 Identities = 96/151 (63%), Positives = 118/151 (78%)
 Frame = +3

Query: 3   QFHALSVKTAALNNSSISCRLLSLYAQPKINNLNYARSVFDHIQQPTLFSWNTIIKCYVE 182
           Q HA S+KTA  N+  +S RLL+LY+ PKIN+L YARS+FD IQ+ +L  WNTIIKCYVE
Sbjct: 34  QLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVE 93

Query: 183 NHRSHDALHLFEQLLSGSPYLPDHFTLPVVLKGCGRLCAVKEGEQIHGLVLKIGYGEDMF 362
           N  SHD + LF +L+    YLPD+FTLP V+KGC RL  V+EG+QIHGL LKIG+G D+F
Sbjct: 94  NQFSHDGIVLFHELVH--EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVF 151

Query: 363 VQSSLVSLYSKCRDIDSARKVFDRMSDKDLV 455
           VQ SLV++YSKC +ID ARKVFD M DKD+V
Sbjct: 152 VQGSLVNMYSKCGEIDCARKVFDGMIDKDVV 182



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
 Frame = +3

Query: 6   FHALSVKTAALNNSSISCRLLSLYAQ----PKINNLNYARSVFDHIQQPTLFSWNTIIKC 173
           F  +  K   L NS I   L+S  A      K  + + A  +F  +    L +WN +I  
Sbjct: 173 FDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAG 232

Query: 174 YVENHRSHDALHLFEQLLS-GSPYLPDHFTLPVVLKGCGRLCAVKEGEQIHGLVLKIGYG 350
           Y  N +  DA+ +F  +L  GS   P H TL  VL     L  + +G  IH  + K G+ 
Sbjct: 233 YELNGQFMDAVKMFFMMLKLGSR--PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFE 290

Query: 351 EDMFVQSSLVSLYSKCRDIDSARKVFDRMSDK 446
            D  + +SL+ +Y+KC  I+SA  VF  +  K
Sbjct: 291 LDGILGTSLIEMYAKCGCIESALTVFRAIQKK 322


>ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528667|gb|EEF30682.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 434

 Score =  190 bits (482), Expect = 1e-46
 Identities = 96/152 (63%), Positives = 117/152 (76%)
 Frame = +3

Query: 3   QFHALSVKTAALNNSSISCRLLSLYAQPKINNLNYARSVFDHIQQPTLFSWNTIIKCYVE 182
           Q HALSVKT   ++ SIS  LLSLYA+PKINNL Y  S+F+ IQ+P L  +N +IKCY++
Sbjct: 26  QLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSIFNKIQEPALVLYNILIKCYIQ 85

Query: 183 NHRSHDALHLFEQLLSGSPYLPDHFTLPVVLKGCGRLCAVKEGEQIHGLVLKIGYGEDMF 362
           N  SHDA+ LF QLL    + PD FTLP V+KGC RL A KEG+QIHGLVLK+G+G + F
Sbjct: 86  NQLSHDAITLFSQLLH--EFNPDGFTLPCVIKGCARLHATKEGKQIHGLVLKLGFGLNKF 143

Query: 363 VQSSLVSLYSKCRDIDSARKVFDRMSDKDLVS 458
           V SSLV++YSKC+DIDSA+KVF  M DKDLVS
Sbjct: 144 VSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVS 175



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 39/122 (31%), Positives = 66/122 (54%)
 Frame = +3

Query: 87  KINNLNYARSVFDHIQQPTLFSWNTIIKCYVENHRSHDALHLFEQLLSGSPYLPDHFTLP 266
           K  +   A  +FD + +  L SWN+++  Y  N R  +AL LF  +L    + P+H TL 
Sbjct: 247 KAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFKEALDLFLTMLERD-FTPNHATLV 305

Query: 267 VVLKGCGRLCAVKEGEQIHGLVLKIGYGEDMFVQSSLVSLYSKCRDIDSARKVFDRMSDK 446
                   L ++  G+ +H  ++K G+  D  + +SL+++YSKC +I+SA  VF  ++ K
Sbjct: 306 STFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSLINMYSKCGNIESALSVFQLITKK 365

Query: 447 DL 452
            L
Sbjct: 366 KL 367


>ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
           gi|449508034|ref|XP_004163198.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  122 bits (307), Expect = 2e-26
 Identities = 61/152 (40%), Positives = 94/152 (61%)
 Frame = +3

Query: 3   QFHALSVKTAALNNSSISCRLLSLYAQPKINNLNYARSVFDHIQQPTLFSWNTIIKCYVE 182
           Q H   +K     +S  S  +L+  A    N+++YA S+F  + +PT F +NT+I+ YV 
Sbjct: 50  QVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFNTMIRGYVN 109

Query: 183 NHRSHDALHLFEQLLSGSPYLPDHFTLPVVLKGCGRLCAVKEGEQIHGLVLKIGYGEDMF 362
           N    +A++L+  +L      PD+FT PVVLK C RL  ++EG QIHG V K+G  +D++
Sbjct: 110 NMNFENAIYLYNDMLQREVE-PDNFTYPVVLKACARLAVIQEGMQIHGHVFKLGLEDDVY 168

Query: 363 VQSSLVSLYSKCRDIDSARKVFDRMSDKDLVS 458
           VQ+SL+++Y KCRDI+ +  +F RM  K + S
Sbjct: 169 VQNSLINMYGKCRDIEMSCAIFRRMEQKSVAS 200