BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00027635
         (528 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containi...   201   6e-50
ref|XP_002514422.1| pentatricopeptide repeat-containing protein,...   196   2e-48
ref|XP_002305039.1| predicted protein [Populus trichocarpa] gi|2...   191   4e-47
ref|XP_002525881.1| pentatricopeptide repeat-containing protein,...   189   2e-46
ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containi...   186   2e-45

>ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score =  201 bits (511), Expect = 6e-50
 Identities = 103/174 (59%), Positives = 127/174 (72%)
 Frame = +1

Query: 1   VDPDVFVYTTYIEGICSNGRSDVGYCLLKLHRSAEIPFDVYAYFVVIRGFVSEMKLKEAE 180
           V+P+    +TYIEG+CS+ RSD+GY  L+  R+A  P D +AY  VIRGF SEMKLKEAE
Sbjct: 258 VNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAE 317

Query: 181 GVLIDMEETGIAPDANCYEALIKGYCEAGNCIKSLALHNDMLKKGIKSNCFIASSLLRCL 360
            V IDM   GIAPD   Y ALI  YC+AGN ++++ALHNDM+  GIK+NC I SS+L+CL
Sbjct: 318 DVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCL 377

Query: 361 SRMGSKFNSEVVDLFKYFKDMGIFLDGVVYNIAIDALGKLEKLQEAMELFEEMK 522
             MG    SEVVD FK F+D GIFLD V+YNI +DAL KL K++EA+EL  EMK
Sbjct: 378 CEMG--MASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMK 429



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
 Frame = +1

Query: 34   IEGICSNGRSDVGYCLLKLHRSAEIPFDVYAYFVVIRGFVSEMKLKEAEGVLIDMEETGI 213
            +  +C  G  D    LL+   + ++  +   Y  +I  F  +  +K A+ V   + E GI
Sbjct: 580  LSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGI 639

Query: 214  APDANCYEALIKGYCEAGNCIKSLA-LHNDMLKKGIKSNCFIASSLLRCLSRMGSKF--- 381
             PD   Y  +I GYC   NC++    + NDM ++GIK +    + +L   S++  K    
Sbjct: 640  TPDVITYTMMINGYCRV-NCLREARDIFNDMKERGIKPDVITYTVVLDGHSKVNLKMARS 698

Query: 382  -------NSEVVDLFKYF---KDMGIFLDGVVYNIAIDALGKLEKLQEAMELFEEM 519
                     E +D   ++   K+MGI  D V Y + ID+  K   LQ+A+ L++EM
Sbjct: 699  LQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEM 754



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 40/173 (23%), Positives = 77/173 (44%)
 Frame = +1

Query: 10  DVFVYTTYIEGICSNGRSDVGYCLLKLHRSAEIPFDVYAYFVVIRGFVSEMKLKEAEGVL 189
           D  +Y   ++ +C  G+ +    LL   +   +  DV  Y  +I G+  + KL +A+ + 
Sbjct: 401 DEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMF 460

Query: 190 IDMEETGIAPDANCYEALIKGYCEAGNCIKSLALHNDMLKKGIKSNCFIASSLLRCLSRM 369
            +M+E GI PD   Y  L+ G+   G   ++L L + +  +G+K N    + ++  L   
Sbjct: 461 EEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMA 520

Query: 370 GSKFNSEVVDLFKYFKDMGIFLDGVVYNIAIDALGKLEKLQEAMELFEEMKRK 528
           G    +E        +D  +      Y+  +D   K    ++A ELF  + ++
Sbjct: 521 GKVKEAEA--FLNTLEDKCL----ENYSAMVDGYCKANFTRKAYELFSRLSKQ 567


>ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546418|gb|EEF47918.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 809

 Score =  196 bits (497), Expect = 2e-48
 Identities = 101/176 (57%), Positives = 131/176 (74%)
 Frame = +1

Query: 1   VDPDVFVYTTYIEGICSNGRSDVGYCLLKLHRSAEIPFDVYAYFVVIRGFVSEMKLKEAE 180
           V P+ F YTT+IEG+C +GRSD+G+ +L+   +A+IP DV+AY VVIRGF SEMKLKEAE
Sbjct: 250 VTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAE 309

Query: 181 GVLIDMEETGIAPDANCYEALIKGYCEAGNCIKSLALHNDMLKKGIKSNCFIASSLLRCL 360
            +L +ME+ G APD   Y ALI GYC  GN +K+LALH++M+ KG+K+NC I SS+L+ L
Sbjct: 310 SILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGL 369

Query: 361 SRMGSKFNSEVVDLFKYFKDMGIFLDGVVYNIAIDALGKLEKLQEAMELFEEMKRK 528
           S+MG    SEV + FK FK MGIF D   YN+ +DAL KL K++EA+EL  EMK K
Sbjct: 370 SQMG--MASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGK 423



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 13/172 (7%)
 Frame = +1

Query: 43   ICSNGRSDVGYCLLKLHRSAEIPFDVYAYFVVIRGFVSEMKLKEAEGVLIDMEETGIAPD 222
            +CS G S+   CLL+   +  I   +  Y  VI       ++++A+ V   + + G+APD
Sbjct: 575  LCSEGDSEKALCLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPD 634

Query: 223  ANCYEALIKGYCEAGNCIKSLALHNDMLKKGIKSNCFIASSLLRCLSRMGSKFNSEVVD- 399
               Y  +I GYC      ++  +  DM  +GI+ +    + LL   S++  + +S  +D 
Sbjct: 635  VITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLNNCSKIDLRSSSSSLDA 694

Query: 400  ------------LFKYFKDMGIFLDGVVYNIAIDALGKLEKLQEAMELFEEM 519
                        L+   KDM I  D + Y + ID   K   +Q+A+ LF EM
Sbjct: 695  MKSKENMMDPSALWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEM 746



 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 43/176 (24%), Positives = 79/176 (44%)
 Frame = +1

Query: 1   VDPDVFVYTTYIEGICSNGRSDVGYCLLKLHRSAEIPFDVYAYFVVIRGFVSEMKLKEAE 180
           V  +  + ++ ++G+   G +       K  +   I FD   Y VV+       K++EA 
Sbjct: 355 VKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAV 414

Query: 181 GVLIDMEETGIAPDANCYEALIKGYCEAGNCIKSLALHNDMLKKGIKSNCFIASSLLRCL 360
            +L++M+   + PD   Y  +I GY   G  + +L ++ +M   G K +    + L    
Sbjct: 415 ELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGF 474

Query: 361 SRMGSKFNSEVVDLFKYFKDMGIFLDGVVYNIAIDALGKLEKLQEAMELFEEMKRK 528
           SR G     E + L  Y +  G+  D V +N+ I+ L    K+ +A   F+ ++ K
Sbjct: 475 SRNG--LTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEK 528



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 30/92 (32%), Positives = 51/92 (55%)
 Frame = +1

Query: 94  RSAEIPFDVYAYFVVIRGFVSEMKLKEAEGVLIDMEETGIAPDANCYEALIKGYCEAGNC 273
           +  +I  DV  Y V+I        +++A  +  +M + G+APD   Y AL+ GYC  GN 
Sbjct: 712 KDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNI 771

Query: 274 IKSLALHNDMLKKGIKSNCFIASSLLRCLSRM 369
            K++ L ++ML KGI+ +     S+L C+ ++
Sbjct: 772 KKAVVLFDEMLNKGIRPDAH-TMSVLHCILKV 802


>ref|XP_002305039.1| predicted protein [Populus trichocarpa] gi|222848003|gb|EEE85550.1|
           predicted protein [Populus trichocarpa]
          Length = 800

 Score =  191 bits (486), Expect = 4e-47
 Identities = 97/176 (55%), Positives = 125/176 (71%)
 Frame = +1

Query: 1   VDPDVFVYTTYIEGICSNGRSDVGYCLLKLHRSAEIPFDVYAYFVVIRGFVSEMKLKEAE 180
           V P+ + YTTYIEG+C+N RSD GY +L+  +   IP DVYAY  VIRGF +EMK+  AE
Sbjct: 265 VIPNAYAYTTYIEGLCANQRSDFGYQVLQAWKEGNIPIDVYAYVAVIRGFCNEMKMDRAE 324

Query: 181 GVLIDMEETGIAPDANCYEALIKGYCEAGNCIKSLALHNDMLKKGIKSNCFIASSLLRCL 360
            VL DME+  +  DA CY  LI+GYC+AG+  K+LALHNDM  KGIK+NC I S++L+  
Sbjct: 325 VVLGDMEKQELISDARCYSELIRGYCKAGDLSKALALHNDMESKGIKTNCVIVSTILQYF 384

Query: 361 SRMGSKFNSEVVDLFKYFKDMGIFLDGVVYNIAIDALGKLEKLQEAMELFEEMKRK 528
              G   +S+VV+ FK FKD+ IFLD V YNI +DAL KLEK+ +A+ L +EMK K
Sbjct: 385 CEKG--MHSQVVEEFKRFKDLRIFLDEVSYNIVVDALCKLEKVDQAVALLDEMKGK 438



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 41/170 (24%), Positives = 75/170 (44%)
 Frame = +1

Query: 19  VYTTYIEGICSNGRSDVGYCLLKLHRSAEIPFDVYAYFVVIRGFVSEMKLKEAEGVLIDM 198
           + +T ++  C  G         K  +   I  D  +Y +V+       K+ +A  +L +M
Sbjct: 376 IVSTILQYFCEKGMHSQVVEEFKRFKDLRIFLDEVSYNIVVDALCKLEKVDQAVALLDEM 435

Query: 199 EETGIAPDANCYEALIKGYCEAGNCIKSLALHNDMLKKGIKSNCFIASSLLRCLSRMGSK 378
           +   +  D   Y  LI GYC  G  + +  +  +M  KG++ +    + LL   SR G  
Sbjct: 436 KGKQMDMDIMHYTTLINGYCHVGKLVDAFRVFEEMEGKGLEPDVVTFNILLAAFSRRG-- 493

Query: 379 FNSEVVDLFKYFKDMGIFLDGVVYNIAIDALGKLEKLQEAMELFEEMKRK 528
             +E + L++Y K   +  + + +N+ I+ L    K+ EA   F  M+ K
Sbjct: 494 LANEALKLYEYMKSQDLKPNAITHNVMIEGLCIGGKVTEAEAFFCNMEDK 543



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
 Frame = +1

Query: 7    PDVFVYTTYIEGICSNGRSDVGYCLLKLHRSAEIPFDVYAYFVVIRGFVSEM-------K 165
            PD+F YTT I   C   R      L +  +   I  D+  + V++ G +  +       K
Sbjct: 648  PDIFTYTTMINVCCRQNRLSEARNLFQDMKHRGIKPDLVTFTVLLDGHLKRVHSEAFARK 707

Query: 166  LKE----AEGVLIDMEETGIAPDANCYEALIKGYCEAGNCIKSLALHNDMLKKGIKSNCF 333
             KE    A  +  +M+ T I PD  CY ALI G+C+      ++ L+++M+ +G++ +  
Sbjct: 708  RKEVNLAASNIWKEMQNTEIRPDVICYTALIDGHCKVDRLEDAIGLYDEMMYRGVEPDRA 767

Query: 334  IASSLL 351
              ++LL
Sbjct: 768  TCTALL 773


>ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534795|gb|EEF36485.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 913

 Score =  189 bits (480), Expect = 2e-46
 Identities = 92/176 (52%), Positives = 122/176 (69%)
 Frame = +1

Query: 1   VDPDVFVYTTYIEGICSNGRSDVGYCLLKLHRSAEIPFDVYAYFVVIRGFVSEMKLKEAE 180
           + P  F YT YIEG+C N  SD+GY +L+  + A IP D+YAY V +RGF +E+K  +AE
Sbjct: 264 ITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDMYAYTVAVRGFCNELKFDKAE 323

Query: 181 GVLIDMEETGIAPDANCYEALIKGYCEAGNCIKSLALHNDMLKKGIKSNCFIASSLLRCL 360
            VL DME+ G+ PD +CY ALI  +C+AGN +K+ A  N+M+ KG+K NC I  S+L CL
Sbjct: 324 SVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMSKGVKVNCVIVGSILHCL 383

Query: 361 SRMGSKFNSEVVDLFKYFKDMGIFLDGVVYNIAIDALGKLEKLQEAMELFEEMKRK 528
             +G   +SEVVD F  FK +G+FLDGV YN  +DAL KL KL+EA+ L +EMK K
Sbjct: 384 CELG--MHSEVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLEEAITLLDEMKMK 437


>ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial-like [Glycine max]
          Length = 819

 Score =  186 bits (472), Expect = 2e-45
 Identities = 88/176 (50%), Positives = 121/176 (68%)
 Frame = +1

Query: 1   VDPDVFVYTTYIEGICSNGRSDVGYCLLKLHRSAEIPFDVYAYFVVIRGFVSEMKLKEAE 180
           V P  + +  YIEG+C+N RSD+GY +L+  R    P +VYAY  V+RGF +EMKL EA+
Sbjct: 261 VIPHSYCFAAYIEGLCNNHRSDLGYEVLQAFRKGNAPLEVYAYTAVVRGFCNEMKLDEAQ 320

Query: 181 GVLIDMEETGIAPDANCYEALIKGYCEAGNCIKSLALHNDMLKKGIKSNCFIASSLLRCL 360
           GV  DME  G+ PD   Y +LI GYC++ N +++LALH++M+ +G+K+NC + S +L CL
Sbjct: 321 GVFDDMERQGVVPDVYVYSSLIHGYCKSHNLLRALALHDEMISRGVKTNCVVVSCILHCL 380

Query: 361 SRMGSKFNSEVVDLFKYFKDMGIFLDGVVYNIAIDALGKLEKLQEAMELFEEMKRK 528
             MG     EVVD FK  K+ G+FLDGV YNI  DAL  L K+++A+E+ EEMK K
Sbjct: 381 GEMG--MTLEVVDQFKELKESGMFLDGVAYNIVFDALCMLGKVEDAVEMVEEMKSK 434



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 49/181 (27%), Positives = 87/181 (48%), Gaps = 7/181 (3%)
 Frame = +1

Query: 7    PDVFVYTTYIEGICSNGRSDVGYCLLKLHRSAEIPFD------VYAYFVVIRGFVSEMKL 168
            P+   +   IEG+CS G+             AE+ F+      +  Y  ++ G+     +
Sbjct: 508  PNSTTHKMIIEGLCSGGKV----------LEAEVYFNSLEDKNIEIYSAMVNGYCETDLV 557

Query: 169  KEAEGVLIDMEETG-IAPDANCYEALIKGYCEAGNCIKSLALHNDMLKKGIKSNCFIASS 345
            K++  V + +   G +A  A+C++ L K  C  G+  K++ L + ML   ++ +  + S 
Sbjct: 558  KKSYEVFLKLLNQGDMAKKASCFKLLSK-LCMTGDIEKAVKLLDRMLLSNVEPSKIMYSK 616

Query: 346  LLRCLSRMGSKFNSEVVDLFKYFKDMGIFLDGVVYNIAIDALGKLEKLQEAMELFEEMKR 525
            +L  L + G   N+    LF  F   G   D V Y I I++  ++  LQEA +LF++MKR
Sbjct: 617  ILAALCQAGDMKNART--LFDVFVHRGFTPDVVTYTIMINSYCRMNCLQEAHDLFQDMKR 674

Query: 526  K 528
            +
Sbjct: 675  R 675