BLASTX nr result

ID: Bupleurum21_contig00027619 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00027619
         (418 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318937.1| chromatin remodeling complex subunit [Populu...   133   1e-29
ref|XP_002529415.1| mom(plant), putative [Ricinus communis] gi|2...   131   5e-29
ref|XP_002330022.1| chromatin remodeling complex subunit [Populu...   129   2e-28
ref|XP_002282476.2| PREDICTED: uncharacterized protein LOC100258...   128   4e-28
ref|XP_002328309.1| chromatin remodeling complex subunit [Populu...   125   4e-27

>ref|XP_002318937.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222857313|gb|EEE94860.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 2283

 Score =  133 bits (335), Expect = 1e-29
 Identities = 63/100 (63%), Positives = 79/100 (79%)
 Frame = +3

Query: 114  EKSTLSDTQKSLHLRVKPDIVKLCEILRLSDEVKIMVERFLEYVMSNHQVKSDSPSILQA 293
            E+  L D++KSLHL +KP+I KLCEIL+L + VK+MVERFLEYV++NH +  +  SILQA
Sbjct: 1259 ERMNLHDSEKSLHLILKPEITKLCEILQLPENVKVMVERFLEYVLNNHHISREPASILQA 1318

Query: 294  FLISLCWNSASLLKQKVDRKESLFLAKQHLKFSCNEKEAE 413
            FLISLCW SAS+LK K+  KESL LAKQHL F C + EA+
Sbjct: 1319 FLISLCWTSASMLKHKLGHKESLALAKQHLNFGCKKDEAD 1358


>ref|XP_002529415.1| mom(plant), putative [Ricinus communis] gi|223531092|gb|EEF32941.1|
            mom(plant), putative [Ricinus communis]
          Length = 1982

 Score =  131 bits (330), Expect = 5e-29
 Identities = 63/100 (63%), Positives = 78/100 (78%)
 Frame = +3

Query: 114  EKSTLSDTQKSLHLRVKPDIVKLCEILRLSDEVKIMVERFLEYVMSNHQVKSDSPSILQA 293
            E+  + D+QKSLHL +KPD+ KLCEIL+L D VK MV+ FLEYVM+NH V  +  +ILQA
Sbjct: 883  ERINVHDSQKSLHLLLKPDMAKLCEILKLPDNVKAMVQSFLEYVMNNHHVIREPATILQA 942

Query: 294  FLISLCWNSASLLKQKVDRKESLFLAKQHLKFSCNEKEAE 413
            F ISLCW +ASLLK K+D KESL LAKQHL F C ++EA+
Sbjct: 943  FQISLCWTAASLLKHKIDHKESLALAKQHLNFGCKKEEAD 982


>ref|XP_002330022.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222871447|gb|EEF08578.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1441

 Score =  129 bits (324), Expect = 2e-28
 Identities = 59/94 (62%), Positives = 77/94 (81%)
 Frame = +3

Query: 132 DTQKSLHLRVKPDIVKLCEILRLSDEVKIMVERFLEYVMSNHQVKSDSPSILQAFLISLC 311
           D++KSLHL +KP+I KLCEIL+L + VK+MVE+F EYV++NH V  + PS+LQ FLISLC
Sbjct: 333 DSEKSLHLFLKPEIAKLCEILQLPENVKVMVEQFREYVLNNHHVSREPPSLLQGFLISLC 392

Query: 312 WNSASLLKQKVDRKESLFLAKQHLKFSCNEKEAE 413
           W +AS+LK K+D KESL LAK+HL FSC + EA+
Sbjct: 393 WTAASMLKHKLDHKESLALAKEHLNFSCKKDEAD 426


>ref|XP_002282476.2| PREDICTED: uncharacterized protein LOC100258707 [Vitis vinifera]
          Length = 1534

 Score =  128 bits (322), Expect = 4e-28
 Identities = 74/153 (48%), Positives = 91/153 (59%), Gaps = 18/153 (11%)
 Frame = +3

Query: 9    GAPGILGGYNLCSVKRTDASSIDLLHPRDAPTIAPEKSTLS------------------D 134
            GA GI       S+ R  A + D LH   A T  P  S +S                  D
Sbjct: 621  GASGISANNESQSLSRPTACTHDALHANRASTSPPLVSDISEASSEIHTIEFEGRRKLRD 680

Query: 135  TQKSLHLRVKPDIVKLCEILRLSDEVKIMVERFLEYVMSNHQVKSDSPSILQAFLISLCW 314
             QKSLHL ++ DI KLC+IL+LS++VK MV R LEYVM+NH V  +  SILQAF ISLCW
Sbjct: 681  AQKSLHLVLETDISKLCDILQLSEDVKGMVGRLLEYVMNNHHVNREPASILQAFQISLCW 740

Query: 315  NSASLLKQKVDRKESLFLAKQHLKFSCNEKEAE 413
             +ASL+  ++DRK SL LAKQHL F+C E+E E
Sbjct: 741  TAASLMNHEIDRKGSLMLAKQHLAFTCKEEEVE 773


>ref|XP_002328309.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222837824|gb|EEE76189.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1996

 Score =  125 bits (314), Expect = 4e-27
 Identities = 60/100 (60%), Positives = 80/100 (80%)
 Frame = +3

Query: 114  EKSTLSDTQKSLHLRVKPDIVKLCEILRLSDEVKIMVERFLEYVMSNHQVKSDSPSILQA 293
            E+  L  ++KSLHL +KP+I KL EIL+L ++VK+MV++FLEYV++NH V  +  SILQA
Sbjct: 917  ERMNLHYSRKSLHLVLKPEIEKLSEILQLPEDVKVMVDQFLEYVLNNHHVSREPASILQA 976

Query: 294  FLISLCWNSASLLKQKVDRKESLFLAKQHLKFSCNEKEAE 413
            FLISLCW +AS++K K+DRKESL LAKQHL F C + EA+
Sbjct: 977  FLISLCWTAASMIKYKLDRKESLALAKQHLNFCCTKDEAD 1016


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