BLASTX nr result
ID: Bupleurum21_contig00027517
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00027517
(1391 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002321027.1| predicted protein [Populus trichocarpa] gi|2... 259 2e-66
ref|XP_002520664.1| conserved hypothetical protein [Ricinus comm... 244 4e-62
ref|XP_002520663.1| conserved hypothetical protein [Ricinus comm... 240 7e-61
ref|XP_002871294.1| mitochondrial transcription termination fact... 229 1e-57
ref|NP_568185.1| Mitochondrial transcription termination factor ... 228 4e-57
>ref|XP_002321027.1| predicted protein [Populus trichocarpa] gi|222861800|gb|EEE99342.1|
predicted protein [Populus trichocarpa]
Length = 400
Score = 259 bits (661), Expect = 2e-66
Identities = 126/305 (41%), Positives = 197/305 (64%), Gaps = 1/305 (0%)
Frame = -3
Query: 1191 FSETAKNNSLVCLFKNYGFTDLQISTLLSKQPFLLSMNEDKVIKPRLDLFTSYGFSSADI 1012
F + +S++ L +N+GF+ QIS+L+ K+PFLL N + P+LD F S G S +
Sbjct: 87 FQSPERPDSVLALLRNHGFSRTQISSLVKKRPFLLLSNPTNTLLPKLDFFLSLGMSRPHL 146
Query: 1011 YHILNFDKELLRRSIKNQIIPSCEYLKSVLKDNQLLVATVKRSTWVLKQNFRDNLEPNIE 832
L+ D LL RS++NQI+PS +LK++L+ ++ +V+ KR+TW+ ++ NL PN+E
Sbjct: 147 ARTLSSDPTLLTRSLENQIVPSYNFLKTILRSDEKIVSAFKRTTWIFLEDLSKNLIPNLE 206
Query: 831 ILRNYGVLESRISAFLRLQPRCLLTSKDRFEMVIKEVIEMGFDPLKSHFIGAYIVKSG-L 655
+LR GV +S IS L P ++ + + F ++EV +MGFDP KS F+ A G
Sbjct: 207 LLRKVGVPQSCISLLLTHFPEAMMENHEEFSENVEEVRKMGFDPNKSTFVLAVHALCGKC 266
Query: 654 KKTMWDRKWNYYKKWGWTDDEILSAFKKQPGILAASEEKIERVLDFLIKKMGWNASEVST 475
K++W+R + YK+WGWT D+ILSAF+K P + SE+KI + LDF + KMGW + E+
Sbjct: 267 NKSIWERCFEVYKRWGWTKDDILSAFRKHPHCMMLSEKKIMKGLDFFVNKMGWPSKEIVH 326
Query: 474 CPLVIMHSLEKWTMPRCFVVQFLLSKDALKEDITLKRFIIPMENRFKEKYVDKYCLQYPE 295
CP+++ SLEK +PRC V+Q L SK +K+DI+L ++P+E RF E++V K+ + P+
Sbjct: 327 CPVILFLSLEKRIIPRCKVIQVLWSKGLIKKDISLNTVLLPVEKRFLERFVTKFEEEVPQ 386
Query: 294 ILDLY 280
+L +Y
Sbjct: 387 LLSVY 391
>ref|XP_002520664.1| conserved hypothetical protein [Ricinus communis]
gi|223540049|gb|EEF41626.1| conserved hypothetical
protein [Ricinus communis]
Length = 406
Score = 244 bits (623), Expect = 4e-62
Identities = 122/315 (38%), Positives = 201/315 (63%), Gaps = 2/315 (0%)
Frame = -3
Query: 1203 NQRYFSETAKN-NSLVCLFKNYGFTDLQISTLLSKQPFLLSMNEDKVIKPRLDLFTSYGF 1027
+Q+ E+ K ++++ L ++ GF+ QIS+L+ K+PFLL + + P+L+ F S G
Sbjct: 83 SQKIHLESPKRADAVLALLRDRGFSKTQISSLVKKRPFLLLAHPQNTLLPKLEFFYSIGA 142
Query: 1026 SSADIYHILNFDKELLRRSIKNQIIPSCEYLKSVLKDNQLLVATVKRSTWVLKQNFRDNL 847
S++ + L+ D LL RS++NQIIPS +LKS+L ++ +V+ +KR+TW+ ++ NL
Sbjct: 143 SNSALARALSSDPTLLTRSLENQIIPSYNFLKSILLSDEKIVSALKRTTWIFLEDHSKNL 202
Query: 846 EPNIEILRNYGVLESRISAFLRLQPRCLLTSKDRFEMVIKEVIEMGFDPLKSHFIGAYIV 667
PNIE+LR GVL S IS L P L+ D+F ++KEV EM FDP KS F+ A
Sbjct: 203 IPNIELLREAGVLHSCISLLLTHFPEALMQRHDKFSKIVKEVREMEFDPKKSTFVLAVHA 262
Query: 666 KSGL-KKTMWDRKWNYYKKWGWTDDEILSAFKKQPGILAASEEKIERVLDFLIKKMGWNA 490
SG K++W++ + Y +WGW+ D+I +AFKK P + SE+KI + +DF + KMG+ +
Sbjct: 263 ISGKGNKSIWNKCFEVYMRWGWSKDDIFAAFKKHPHCMMLSEKKIMKAMDFFVNKMGFPS 322
Query: 489 SEVSTCPLVIMHSLEKWTMPRCFVVQFLLSKDALKEDITLKRFIIPMENRFKEKYVDKYC 310
++ CP+V+ SLEK +PRC V++ L++K +KED++L ++P+E F +++V ++
Sbjct: 323 KVIAQCPVVLFFSLEKRIVPRCRVIRVLMNKRLVKEDVSLASVLLPVEQCFLDRFVTRFA 382
Query: 309 LQYPEILDLYARVND 265
+ P +L +Y D
Sbjct: 383 EEIPRLLSVYEGKRD 397
>ref|XP_002520663.1| conserved hypothetical protein [Ricinus communis]
gi|223540048|gb|EEF41625.1| conserved hypothetical
protein [Ricinus communis]
Length = 377
Score = 240 bits (612), Expect = 7e-61
Identities = 124/310 (40%), Positives = 194/310 (62%), Gaps = 2/310 (0%)
Frame = -3
Query: 1203 NQRYFSETAKN-NSLVCLFKNYGFTDLQISTLLSKQPFLLSMNEDKVIKPRLDLFTSYGF 1027
+Q+ E+ K ++++ L K+ GFT QIS+L+ K+P LL + + P+L+ F S G
Sbjct: 58 SQKVHLESPKRADTVLALLKDRGFTKTQISSLVKKRPSLLLAHAHNTLLPKLEFFYSIGV 117
Query: 1026 SSADIYHILNFDKELLRRSIKNQIIPSCEYLKSVLKDNQLLVATVKRSTWVLKQNFRDNL 847
SS+D+ L+ D LL RSI+NQI+PS +LKS+L N+ +V+ +KR+TW+ +++ NL
Sbjct: 118 SSSDLARTLSSDPTLLTRSIENQIVPSYNFLKSILLSNEKIVSALKRTTWIFLEDYSKNL 177
Query: 846 EPNIEILRNYGVLESRISAFLRLQPRCLLTSKDRFEMVIKEVIEMGFDPLKSHFIGAYIV 667
PN+E LR GV S IS L P +L F V+KEV EMGFDP KS F+ A
Sbjct: 178 MPNVERLREIGVTHSCISLLLTNFPEAVLQRHGEFNKVVKEVKEMGFDPKKSIFVMAVHA 237
Query: 666 KSG-LKKTMWDRKWNYYKKWGWTDDEILSAFKKQPGILAASEEKIERVLDFLIKKMGWNA 490
SG K +W++ + YK+W W+ D+I +AFKK P + SE+KI +DF + KMG +
Sbjct: 238 ISGKSNKAIWNKCFEVYKRWDWSKDDIFAAFKKHPHCMMLSEKKIMLAMDFFVNKMGLPS 297
Query: 489 SEVSTCPLVIMHSLEKWTMPRCFVVQFLLSKDALKEDITLKRFIIPMENRFKEKYVDKYC 310
++ CP+++ SLEK +PRC V++ L++K +K+D++L ++P E F +++V KY
Sbjct: 298 KVIAQCPVLLFFSLEKRIVPRCRVIRVLMNKGLVKKDVSLATVLVPTEKCFLDRFVIKYE 357
Query: 309 LQYPEILDLY 280
+ P +L +Y
Sbjct: 358 EEVPLLLRVY 367
>ref|XP_002871294.1| mitochondrial transcription termination factor family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297317131|gb|EFH47553.1| mitochondrial transcription
termination factor family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 404
Score = 229 bits (585), Expect = 1e-57
Identities = 117/298 (39%), Positives = 182/298 (61%), Gaps = 1/298 (0%)
Frame = -3
Query: 1170 NSLVCLFKNYGFTDLQISTLLSKQPFLLSMNEDKVIKPRLDLFTSYGFSSADIYHILNFD 991
N+++ L +++GFT QISTL+ K+P LL N + V+ P+L F S G S + + L D
Sbjct: 101 NTVLNLLRDHGFTTAQISTLVKKRPVLLLANAESVLLPKLLFFLSIGVSKSLLARTLASD 160
Query: 990 KELLRRSIKNQIIPSCEYLKSVLKDNQLLVATVKRSTWVLKQNFRDNLEPNIEILRNYGV 811
+L RS+ NQ+IPS ++LKSVL ++ +VA ++R+TWV ++ NL PNI + GV
Sbjct: 161 PTILTRSLVNQLIPSYKFLKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMSETGV 220
Query: 810 LESRISAFLRLQPRCLLTSKDRFEMVIKEVIEMGFDPLKSHFIGAYIVKSGL-KKTMWDR 634
E I L P ++ F+ + K+ EMGF+P KS F+ A SG K++WD+
Sbjct: 221 PEKCIKLLLTHFPEAVMQKSHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDK 280
Query: 633 KWNYYKKWGWTDDEILSAFKKQPGILAASEEKIERVLDFLIKKMGWNASEVSTCPLVIMH 454
+ Y++WGW++D+I+ AFKK P + SE KI R ++F + +M ++ CP+V+
Sbjct: 281 CFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEFFVNEMNLAPRSIAECPVVLFF 340
Query: 453 SLEKWTMPRCFVVQFLLSKDALKEDITLKRFIIPMENRFKEKYVDKYCLQYPEILDLY 280
SLEK +PRC V + L+S +KED +L ++P+E F EK V KY + PE++D+Y
Sbjct: 341 SLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMDVY 398
>ref|NP_568185.1| Mitochondrial transcription termination factor family protein
[Arabidopsis thaliana]
gi|13878065|gb|AAK44110.1|AF370295_1 unknown protein
[Arabidopsis thaliana] gi|6562304|emb|CAB62602.1|
putative protein [Arabidopsis thaliana]
gi|10176724|dbj|BAB09954.1| unnamed protein product
[Arabidopsis thaliana] gi|17104655|gb|AAL34216.1| unknown
protein [Arabidopsis thaliana] gi|21592327|gb|AAM64278.1|
unknown [Arabidopsis thaliana]
gi|332003836|gb|AED91219.1| Mitochondrial transcription
termination factor family protein [Arabidopsis thaliana]
Length = 405
Score = 228 bits (580), Expect = 4e-57
Identities = 115/298 (38%), Positives = 181/298 (60%), Gaps = 1/298 (0%)
Frame = -3
Query: 1170 NSLVCLFKNYGFTDLQISTLLSKQPFLLSMNEDKVIKPRLDLFTSYGFSSADIYHILNFD 991
N+++ L +++GFT QIS+L+ K+P LL N + V+ P+L F S G S + + L D
Sbjct: 102 NTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLARTLASD 161
Query: 990 KELLRRSIKNQIIPSCEYLKSVLKDNQLLVATVKRSTWVLKQNFRDNLEPNIEILRNYGV 811
+L RS+ NQ+IPS +LKSVL ++ +VA ++R+TWV ++ NL PNI + GV
Sbjct: 162 PTILTRSLVNQLIPSYNFLKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYMAETGV 221
Query: 810 LESRISAFLRLQPRCLLTSKDRFEMVIKEVIEMGFDPLKSHFIGAYIVKSGL-KKTMWDR 634
E I L P ++ F+ + K+ EMGF+P KS F+ A SG K++WD+
Sbjct: 222 PEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDK 281
Query: 633 KWNYYKKWGWTDDEILSAFKKQPGILAASEEKIERVLDFLIKKMGWNASEVSTCPLVIMH 454
+ Y++WGW++D+I+ AFKK P + SE KI R +++ + +M ++ CP+V+
Sbjct: 282 CFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFF 341
Query: 453 SLEKWTMPRCFVVQFLLSKDALKEDITLKRFIIPMENRFKEKYVDKYCLQYPEILDLY 280
SLEK +PRC V + L+S +KED +L ++P+E F EK V KY + PE+++LY
Sbjct: 342 SLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLY 399