BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00027207
         (313 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004160441.1| PREDICTED: pentatricopeptide repeat-containi...    92   2e-29
ref|XP_004137553.1| PREDICTED: pentatricopeptide repeat-containi...    92   2e-29
ref|XP_002529554.1| pentatricopeptide repeat-containing protein,...    88   6e-29
ref|NP_188429.1| pentatricopeptide repeat-containing protein [Ar...    91   2e-27
ref|XP_003562458.1| PREDICTED: pentatricopeptide repeat-containi...    74   4e-23

>ref|XP_004160441.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Cucumis sativus]
          Length = 681

 Score = 92.4 bits (228), Expect(2) = 2e-29
 Identities = 42/68 (61%), Positives = 54/68 (79%)
 Frame = -1

Query: 208 IEVLHDMMAGKFCCPDAVTFTTIICGLLQLGRTQEAFNILHNVMPENGFVPGAVTYNAVL 29
           ++VL+DM+ GKFC PD VTFTTII GLL +GR +E+ +IL+ VMPE G VPG +TYNA +
Sbjct: 466 LKVLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIVPGVITYNATI 525

Query: 28  RGLCKLDR 5
           RGL KL +
Sbjct: 526 RGLFKLQQ 533



 Score = 62.0 bits (149), Expect(2) = 2e-29
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = -2

Query: 312 LNVLFSMLQTECKPDVVTLNTVIHGFCKMGKIEEALK 202
           LN L  MLQT C+PDV+TLNTVI GFCK+G IEEALK
Sbjct: 431 LNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALK 467


>ref|XP_004137553.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Cucumis sativus]
          Length = 646

 Score = 92.4 bits (228), Expect(2) = 2e-29
 Identities = 42/68 (61%), Positives = 54/68 (79%)
 Frame = -1

Query: 208 IEVLHDMMAGKFCCPDAVTFTTIICGLLQLGRTQEAFNILHNVMPENGFVPGAVTYNAVL 29
           ++VL+DM+ GKFC PD VTFTTII GLL +GR +E+ +IL+ VMPE G VPG +TYNA +
Sbjct: 433 LKVLNDMIGGKFCTPDHVTFTTIIFGLLNVGRIRESLDILYKVMPEKGIVPGVITYNATI 492

Query: 28  RGLCKLDR 5
           RGL KL +
Sbjct: 493 RGLFKLQQ 500



 Score = 62.0 bits (149), Expect(2) = 2e-29
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = -2

Query: 312 LNVLFSMLQTECKPDVVTLNTVIHGFCKMGKIEEALK 202
           LN L  MLQT C+PDV+TLNTVI GFCK+G IEEALK
Sbjct: 398 LNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALK 434


>ref|XP_002529554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530966|gb|EEF32823.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 678

 Score = 87.8 bits (216), Expect(2) = 6e-29
 Identities = 42/66 (63%), Positives = 48/66 (72%)
 Frame = -1

Query: 208 IEVLHDMMAGKFCCPDAVTFTTIICGLLQLGRTQEAFNILHNVMPENGFVPGAVTYNAVL 29
           + +L DM  GKFC PDAVTFTTII GLL  GR+QEA N+L+ VM E G  PG  TYNAV+
Sbjct: 471 LTILTDMTMGKFCAPDAVTFTTIIAGLLNAGRSQEALNLLYKVMHEKGISPGVETYNAVI 530

Query: 28  RGLCKL 11
            GL KL
Sbjct: 531 HGLFKL 536



 Score = 64.7 bits (156), Expect(2) = 6e-29
 Identities = 29/36 (80%), Positives = 34/36 (94%)
 Frame = -2

Query: 312 LNVLFSMLQTECKPDVVTLNTVIHGFCKMGKIEEAL 205
           LNVL SMLQTEC+PDV+TLNTV++GFCKM +IEEAL
Sbjct: 436 LNVLVSMLQTECQPDVITLNTVVNGFCKMHRIEEAL 471


>ref|NP_188429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274006|sp|Q9LSK8.1|PP240_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g18020 gi|11994208|dbj|BAB01330.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332642514|gb|AEE76035.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 688

 Score = 90.5 bits (223), Expect(2) = 2e-27
 Identities = 41/68 (60%), Positives = 51/68 (75%)
 Frame = -1

Query: 208 IEVLHDMMAGKFCCPDAVTFTTIICGLLQLGRTQEAFNILHNVMPENGFVPGAVTYNAVL 29
           ++VL DMM GKFC PDAVT  T++CGLL  GR +EA ++L+ VMPEN   PG V YNAV+
Sbjct: 467 MKVLDDMMTGKFCAPDAVTLNTVMCGLLAQGRAEEALDVLNRVMPENKIKPGVVAYNAVI 526

Query: 28  RGLCKLDR 5
           RGL KL +
Sbjct: 527 RGLFKLHK 534



 Score = 57.0 bits (136), Expect(2) = 2e-27
 Identities = 24/37 (64%), Positives = 32/37 (86%)
 Frame = -2

Query: 312 LNVLFSMLQTECKPDVVTLNTVIHGFCKMGKIEEALK 202
           LNVL SMLQ +C+PD  TLNTVI+G CKMG++++A+K
Sbjct: 432 LNVLVSMLQGDCRPDEYTLNTVINGLCKMGRVDDAMK 468


>ref|XP_003562458.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18020-like [Brachypodium distachyon]
          Length = 737

 Score = 74.3 bits (181), Expect(2) = 4e-23
 Identities = 34/61 (55%), Positives = 42/61 (68%)
 Frame = -1

Query: 202 VLHDMMAGKFCCPDAVTFTTIICGLLQLGRTQEAFNILHNVMPENGFVPGAVTYNAVLRG 23
           +L DM+ GKFC PD VTFTT+I G L +G   EA N+LH +MP     P  VTYN+VL+G
Sbjct: 406 ILDDMINGKFCPPDVVTFTTLISGYLDVGEHAEALNVLHTLMPRRRCSPNIVTYNSVLKG 465

Query: 22  L 20
           L
Sbjct: 466 L 466



 Score = 58.5 bits (140), Expect(2) = 4e-23
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = -2

Query: 312 LNVLFSMLQTECKPDVVTLNTVIHGFCKMGKIEEA 208
           L VL SMLQ EC PDV+T+NTV+HGFCK+G+ +EA
Sbjct: 369 LGVLMSMLQEECAPDVITMNTVVHGFCKVGRAQEA 403