BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00026446
         (412 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico...   197   6e-49
ref|XP_002321582.1| rna-dependent RNA polymerase [Populus tricho...   194   6e-48
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...   192   3e-47
ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis ...   191   4e-47
ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis tha...   188   4e-46

>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
          Length = 1120

 Score =  197 bits (502), Expect = 6e-49
 Identities = 91/131 (69%), Positives = 112/131 (85%)
 Frame = +3

Query: 3    ILESMGNNDAKMILVKMLLHGYKPNAEPYLSMMLRSHYENQVSDLRSRCRIHVPKGRILI 182
            +LES+G  D K IL++ML  GY PN EPYLSMML+SH+ENQ+SDLRSRCRI + KGR+L+
Sbjct: 668  VLESIGGGDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGRVLV 727

Query: 183  GCLDESGILNYGQVYIRLTTTKRVLESGEQSFFHKVDESTSVLTGKVVVTKNPCLHPGDI 362
            GCLDE+GILNYGQVY R+T TK  L+S +QSFF KVDE+T+V+ G VVVTKNPCLHPGD+
Sbjct: 728  GCLDETGILNYGQVYARITMTKAELQSAQQSFFQKVDETTAVVRGNVVVTKNPCLHPGDV 787

Query: 363  RVLEAIYDESL 395
            RVLEA+Y+ +L
Sbjct: 788  RVLEAVYEVAL 798


>ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1110

 Score =  194 bits (493), Expect = 6e-48
 Identities = 93/136 (68%), Positives = 114/136 (83%)
 Frame = +3

Query: 3    ILESMGNNDAKMILVKMLLHGYKPNAEPYLSMMLRSHYENQVSDLRSRCRIHVPKGRILI 182
            +LE++   D+K ILV+MLL GY+PN EPYLSMML++++EN + +LRSRCRI VPKGRILI
Sbjct: 660  VLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELRSRCRIFVPKGRILI 719

Query: 183  GCLDESGILNYGQVYIRLTTTKRVLESGEQSFFHKVDESTSVLTGKVVVTKNPCLHPGDI 362
            GCLDESGIL+YGQVY+R+T TK  L+  +QSFF KVDESTS + G+V VTKNPCLHPGDI
Sbjct: 720  GCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTIIGEVAVTKNPCLHPGDI 779

Query: 363  RVLEAIYDESLVDIGL 410
            RVLEA+YD  L + GL
Sbjct: 780  RVLEAVYDVELEEKGL 795


>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
            gi|297733815|emb|CBI15062.3| unnamed protein product
            [Vitis vinifera]
          Length = 1127

 Score =  192 bits (487), Expect = 3e-47
 Identities = 91/136 (66%), Positives = 113/136 (83%)
 Frame = +3

Query: 3    ILESMGNNDAKMILVKMLLHGYKPNAEPYLSMMLRSHYENQVSDLRSRCRIHVPKGRILI 182
            +LESMG  D K IL KMLL GY+PN EPYLSMML+++ E+Q+SD+R+RCRI VPK R+LI
Sbjct: 665  VLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRIFVPKARVLI 724

Query: 183  GCLDESGILNYGQVYIRLTTTKRVLESGEQSFFHKVDESTSVLTGKVVVTKNPCLHPGDI 362
            GCLDE+GILNYGQVY+R+T TK   +   QSFF KVD++TSV+ GKV+VTKNPCLHPGDI
Sbjct: 725  GCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVIGKVIVTKNPCLHPGDI 784

Query: 363  RVLEAIYDESLVDIGL 410
            RVL+A+Y+  L + GL
Sbjct: 785  RVLDAVYEVELEEKGL 800


>ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
            gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase
            2 [Arabidopsis lyrata subsp. lyrata]
          Length = 1134

 Score =  191 bits (486), Expect = 4e-47
 Identities = 89/135 (65%), Positives = 114/135 (84%)
 Frame = +3

Query: 3    ILESMGNNDAKMILVKMLLHGYKPNAEPYLSMMLRSHYENQVSDLRSRCRIHVPKGRILI 182
            +L+ +   ++K +LVKMLL GY P++EPYLSMMLR H+E+Q+S+L+SRCRI VPKGRILI
Sbjct: 674  VLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILI 733

Query: 183  GCLDESGILNYGQVYIRLTTTKRVLESGEQSFFHKVDESTSVLTGKVVVTKNPCLHPGDI 362
            GC+DE GIL YGQV++R+T TK  L+S EQS+FHK+DE TSV+ GKVVVTKNPCLHPGDI
Sbjct: 734  GCMDEMGILEYGQVFVRVTLTKAELKSREQSYFHKIDEETSVVIGKVVVTKNPCLHPGDI 793

Query: 363  RVLEAIYDESLVDIG 407
            RVL+AIY+ +  + G
Sbjct: 794  RVLDAIYEVNFEEKG 808


>ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
            gi|75318859|sp|O82504.1|RDR2_ARATH RecName:
            Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2;
            AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 1;
            AltName: Full=RNA-directed RNA polymerase 2
            gi|3600048|gb|AAC35535.1| similar to hypothetical
            proteins in Schizosaccharomyces pombe (GB:Z98533) and C.
            elegans (GB:Z48334 and Z78419) [Arabidopsis thaliana]
            gi|4850292|emb|CAB43048.1| putative RNA-directed RNA
            polymerase [Arabidopsis thaliana]
            gi|7267812|emb|CAB81214.1| putative RNA-directed RNA
            polymerase [Arabidopsis thaliana]
            gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase
            2 [Arabidopsis thaliana]
          Length = 1133

 Score =  188 bits (477), Expect = 4e-46
 Identities = 87/128 (67%), Positives = 110/128 (85%)
 Frame = +3

Query: 3    ILESMGNNDAKMILVKMLLHGYKPNAEPYLSMMLRSHYENQVSDLRSRCRIHVPKGRILI 182
            +L+ +   ++K +LVKMLL GY P++EPYLSMMLR H+E+Q+S+L+SRCRI VPKGRILI
Sbjct: 673  VLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPKGRILI 732

Query: 183  GCLDESGILNYGQVYIRLTTTKRVLESGEQSFFHKVDESTSVLTGKVVVTKNPCLHPGDI 362
            GC+DE GIL YGQVY+R+T TK  L+S +QS+F K+DE TSV+ GKVVVTKNPCLHPGDI
Sbjct: 733  GCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCLHPGDI 792

Query: 363  RVLEAIYD 386
            RVL+AIY+
Sbjct: 793  RVLDAIYE 800