BLASTX nr result
ID: Bupleurum21_contig00026375
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00026375
(1931 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 568 e-159
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 549 e-154
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 549 e-153
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 547 e-153
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 546 e-153
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 568 bits (1465), Expect = e-159
Identities = 282/437 (64%), Positives = 340/437 (77%), Gaps = 1/437 (0%)
Frame = +2
Query: 2 EIFSPVVKHTSIRALLSIVAHGDLELEQLDVTTAFLHGNLDEEIYMRQPEGYKVEGKERL 181
EIFSPVV+HTSIR LL+IVAH +LELEQLDV TAFLHG L+EEIYM QP+G++V GKE
Sbjct: 874 EIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENH 933
Query: 182 VCRLRKSLYGLKQSPRQWYKRFDSFMRKHGYKRSKYDCCVYIRKLHGGDYIYLLLYVDDM 361
VC+L+KSLYGLKQSPRQWYKRFDS+M K GY RS YDCCVY +L+ +IYL+LYVDDM
Sbjct: 934 VCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDM 993
Query: 362 LIASKSKVEIDMLKSQLGNEFEMKNMGAAKKILGMEITRERSNRRLFLSQKGYIERVITK 541
LIA+K K +I LK L EFEMK++GAA+KILGMEI R+R R+LFLSQ+ YI++V+ +
Sbjct: 994 LIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLAR 1053
Query: 542 FGMQDAKPVVTPLAPHFRLSNKQSPTTVAEKKNMERVPYASAVGSLMYAMVCTRPDISQA 721
FGM +KP+ TP A + L+ +P + EK+ M RVPYASAVGSLMYAMVCTRPD++ A
Sbjct: 1054 FGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHA 1113
Query: 722 VSVVSRFMANPGKAHWEGVKWILRYLKGTMDKGLCFGGNT-CKVSGFVDADYAGDIDRRR 898
VSVVSRFM PG+ HW+ VK I RYL+GT D GL +GG+T C V+G+ D+DYAGD+D RR
Sbjct: 1114 VSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRR 1173
Query: 899 STTGYVFSIHGSPVSWRSMLQATVALSTTEAEYMAIAEGVKEALWLWGFLCDLGIKQDHV 1078
S TGYVF++ GS VSW++ LQ TV LSTTEAEYMA+ E KE +WL G + DLG+ D
Sbjct: 1174 SMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQA 1233
Query: 1079 DL*CDSQSAIHLAKNQVHHARTKHIDVRYHFVRDVIEDGDISLLKVHTNENPADMLTKVV 1258
+ CDS SAI LAK+QVHH RTKHIDVRYHF+R + I + KV T +NPADM TK V
Sbjct: 1234 TVYCDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPADMFTKPV 1290
Query: 1259 TGSKFQHCLDLLNIIRC 1309
SKFQHCLDLLNI C
Sbjct: 1291 PQSKFQHCLDLLNIRSC 1307
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 549 bits (1415), Expect = e-154
Identities = 270/434 (62%), Positives = 341/434 (78%)
Frame = +2
Query: 2 EIFSPVVKHTSIRALLSIVAHGDLELEQLDVTTAFLHGNLDEEIYMRQPEGYKVEGKERL 181
++FSPVVKH+SIR LSIVA DLELEQLDV TAFLHG L+E+IYM QPEG+ V GKE+
Sbjct: 902 DVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKY 961
Query: 182 VCRLRKSLYGLKQSPRQWYKRFDSFMRKHGYKRSKYDCCVYIRKLHGGDYIYLLLYVDDM 361
VC+L++SLYGLKQSPRQW KRFDSFM H +KRSKYD CVYI+ ++G IYLLLYVDDM
Sbjct: 962 VCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSP-IYLLLYVDDM 1020
Query: 362 LIASKSKVEIDMLKSQLGNEFEMKNMGAAKKILGMEITRERSNRRLFLSQKGYIERVITK 541
LIA+KSK+EI LK L +EF+MK++G+AKKILGMEI+R+R + LFLSQ YI++V+ +
Sbjct: 1021 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQR 1080
Query: 542 FGMQDAKPVVTPLAPHFRLSNKQSPTTVAEKKNMERVPYASAVGSLMYAMVCTRPDISQA 721
F MQ+AK V TP+APHF+LS Q P+T AE + M RVPY+SAVGSLMYAMVC+RPD+S A
Sbjct: 1081 FNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYA 1140
Query: 722 VSVVSRFMANPGKAHWEGVKWILRYLKGTMDKGLCFGGNTCKVSGFVDADYAGDIDRRRS 901
+S+VSR+M+NPGK HW ++WI RYL+GT L FG + G+VD+DYA D+DRRRS
Sbjct: 1141 MSLVSRYMSNPGKEHWRALQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRRRS 1200
Query: 902 TTGYVFSIHGSPVSWRSMLQATVALSTTEAEYMAIAEGVKEALWLWGFLCDLGIKQDHVD 1081
TGYVF+I VSWR+ LQ+ VALSTTEAEYMAI E KE +WL G +L + +
Sbjct: 1201 LTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCIS 1260
Query: 1082 L*CDSQSAIHLAKNQVHHARTKHIDVRYHFVRDVIEDGDISLLKVHTNENPADMLTKVVT 1261
L CDSQSAI+L K+Q+ H RTKHID++YHFVRDVIE+G + + K+ T++NPADM+TK +
Sbjct: 1261 LHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIP 1320
Query: 1262 GSKFQHCLDLLNII 1303
+KF+ C L+ +I
Sbjct: 1321 VAKFELCSSLVGLI 1334
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 549 bits (1414), Expect = e-153
Identities = 270/434 (62%), Positives = 340/434 (78%)
Frame = +2
Query: 2 EIFSPVVKHTSIRALLSIVAHGDLELEQLDVTTAFLHGNLDEEIYMRQPEGYKVEGKERL 181
++FSPVVKH+SIR LSIVA DLELEQLDV TAFLHG L+E+IYM QPEG+ V GKE+
Sbjct: 900 DVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKY 959
Query: 182 VCRLRKSLYGLKQSPRQWYKRFDSFMRKHGYKRSKYDCCVYIRKLHGGDYIYLLLYVDDM 361
VC+L++SLYGLKQSPRQW KRFDSFM H +KRSKYD CVYI+ ++G IYLLLYVDDM
Sbjct: 960 VCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSP-IYLLLYVDDM 1018
Query: 362 LIASKSKVEIDMLKSQLGNEFEMKNMGAAKKILGMEITRERSNRRLFLSQKGYIERVITK 541
LIA+KSK+EI LK L +EF+MK++G+AKKILGMEI+R+R + LFLSQ YI++V+ +
Sbjct: 1019 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILGMEISRDRKSGLLFLSQHNYIKKVLQR 1078
Query: 542 FGMQDAKPVVTPLAPHFRLSNKQSPTTVAEKKNMERVPYASAVGSLMYAMVCTRPDISQA 721
F MQ+AK V TP+APHF+LS Q P+ AE + M RVPY+SAVGSLMYAMVC+RPD+S A
Sbjct: 1079 FNMQNAKAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYA 1138
Query: 722 VSVVSRFMANPGKAHWEGVKWILRYLKGTMDKGLCFGGNTCKVSGFVDADYAGDIDRRRS 901
+S+VSR+M+NPGK HW V+WI RYL+GT L FG + G+VD+DYA D+DRRRS
Sbjct: 1139 MSLVSRYMSNPGKEHWRAVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRRRS 1198
Query: 902 TTGYVFSIHGSPVSWRSMLQATVALSTTEAEYMAIAEGVKEALWLWGFLCDLGIKQDHVD 1081
TGYVF+I VSWR+ LQ+ VALSTTEAEYMAI E KE +WL G +L + +
Sbjct: 1199 LTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCIS 1258
Query: 1082 L*CDSQSAIHLAKNQVHHARTKHIDVRYHFVRDVIEDGDISLLKVHTNENPADMLTKVVT 1261
L CDSQSAI+L K+Q+ H RTKHID++YHFVRDVIE+G + + K+ T++NPADM+TK +
Sbjct: 1259 LHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIP 1318
Query: 1262 GSKFQHCLDLLNII 1303
+KF+ C L+ +I
Sbjct: 1319 VAKFELCSSLVGLI 1332
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 547 bits (1410), Expect = e-153
Identities = 273/431 (63%), Positives = 338/431 (78%)
Frame = +2
Query: 2 EIFSPVVKHTSIRALLSIVAHGDLELEQLDVTTAFLHGNLDEEIYMRQPEGYKVEGKERL 181
++FSPVVKH+SIR LLSIVA D ELEQ+DV TAFLHG L+E+IYM QP+G+ V GKE L
Sbjct: 1106 DVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENL 1165
Query: 182 VCRLRKSLYGLKQSPRQWYKRFDSFMRKHGYKRSKYDCCVYIRKLHGGDYIYLLLYVDDM 361
VCRL+KSLYGLKQSPRQWYKRFDSFM ++RS YD CVY+ K+ G IYLLLYVDDM
Sbjct: 1166 VCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDM 1224
Query: 362 LIASKSKVEIDMLKSQLGNEFEMKNMGAAKKILGMEITRERSNRRLFLSQKGYIERVITK 541
LIA+K K EI LK+QL +EFEMK++GAAKKILGMEITR+R + +L+LSQKGYIE+V+ +
Sbjct: 1225 LIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKLYLSQKGYIEKVLRR 1284
Query: 542 FGMQDAKPVVTPLAPHFRLSNKQSPTTVAEKKNMERVPYASAVGSLMYAMVCTRPDISQA 721
F M DAKPV TPLA HFRLS+ P + + + M RVPY+SAVGSLMYAMVC+RPD+S A
Sbjct: 1285 FNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHA 1344
Query: 722 VSVVSRFMANPGKAHWEGVKWILRYLKGTMDKGLCFGGNTCKVSGFVDADYAGDIDRRRS 901
+SVVSR+MANPGK HW+ V+WI RYL+GT L FG + + G+VD+D+AGD+DR RS
Sbjct: 1345 LSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRDGLVGYVDSDFAGDLDRGRS 1404
Query: 902 TTGYVFSIHGSPVSWRSMLQATVALSTTEAEYMAIAEGVKEALWLWGFLCDLGIKQDHVD 1081
GYVF+I G VSW++ LQATVALSTTEAEYMAI+E KEA+WL G L ++
Sbjct: 1405 LAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCIN 1464
Query: 1082 L*CDSQSAIHLAKNQVHHARTKHIDVRYHFVRDVIEDGDISLLKVHTNENPADMLTKVVT 1261
+ CDSQSAI L K+Q+ H RTKHIDVRYHF+R +I +GD+ + K+ ++NPADM+TK V
Sbjct: 1465 IFCDSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVP 1524
Query: 1262 GSKFQHCLDLL 1294
+KF+ C L+
Sbjct: 1525 ATKFELCSSLV 1535
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 546 bits (1408), Expect = e-153
Identities = 270/434 (62%), Positives = 340/434 (78%)
Frame = +2
Query: 2 EIFSPVVKHTSIRALLSIVAHGDLELEQLDVTTAFLHGNLDEEIYMRQPEGYKVEGKERL 181
++FSPVVKH+SIR LSIVA DLELEQLDV TAFLHG L+E+IYM QPEG+ V GKE+
Sbjct: 900 DVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKY 959
Query: 182 VCRLRKSLYGLKQSPRQWYKRFDSFMRKHGYKRSKYDCCVYIRKLHGGDYIYLLLYVDDM 361
VC+L++SLYGLKQSPRQW KRFDSFM H +KRSKYD CVYI+ ++G IYLLLYVDDM
Sbjct: 960 VCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYDSCVYIKHVNGSP-IYLLLYVDDM 1018
Query: 362 LIASKSKVEIDMLKSQLGNEFEMKNMGAAKKILGMEITRERSNRRLFLSQKGYIERVITK 541
LIA+KSK+EI LK L +EF+MK++G+AKKIL MEI+R+R + LFLSQ YI++V+ +
Sbjct: 1019 LIAAKSKIEITKLKKLLSSEFDMKDLGSAKKILVMEISRDRKSGLLFLSQHNYIKKVLQR 1078
Query: 542 FGMQDAKPVVTPLAPHFRLSNKQSPTTVAEKKNMERVPYASAVGSLMYAMVCTRPDISQA 721
F MQ+AK V TP+APHF+LS Q P+T AE + M RVPY+SAVGSLMYAMVC+RPD+S A
Sbjct: 1079 FNMQNAKAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYA 1138
Query: 722 VSVVSRFMANPGKAHWEGVKWILRYLKGTMDKGLCFGGNTCKVSGFVDADYAGDIDRRRS 901
+S+VSR+M+NPGK HW V+WI RYL+GT L FG + G+VD+DYA D+DRRRS
Sbjct: 1139 MSLVSRYMSNPGKEHWRVVQWIFRYLRGTTYSCLKFGRTDKGLIGYVDSDYAADLDRRRS 1198
Query: 902 TTGYVFSIHGSPVSWRSMLQATVALSTTEAEYMAIAEGVKEALWLWGFLCDLGIKQDHVD 1081
TGYVF+I VSWR+ LQ+ VALSTTEAEYMAI E KE +WL G +L + +
Sbjct: 1199 LTGYVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCIS 1258
Query: 1082 L*CDSQSAIHLAKNQVHHARTKHIDVRYHFVRDVIEDGDISLLKVHTNENPADMLTKVVT 1261
L CDSQSAI+L K+Q+ H RTKHID++YHFVRDVIE+G + + K+ T++NPADM+TK +
Sbjct: 1259 LHCDSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIP 1318
Query: 1262 GSKFQHCLDLLNII 1303
+KF+ C L+ +I
Sbjct: 1319 VAKFELCSSLVGLI 1332