BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00026215
         (559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containi...   299   2e-79
ref|XP_002315764.1| predicted protein [Populus trichocarpa] gi|2...   291   5e-77
ref|XP_003610734.1| Pentatricopeptide repeat-containing protein ...   286   2e-75
ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containi...   281   4e-74
ref|XP_002868248.1| pentatricopeptide repeat-containing protein ...   274   6e-72

>ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera] gi|297737070|emb|CBI26271.3| unnamed
           protein product [Vitis vinifera]
          Length = 727

 Score =  299 bits (766), Expect = 2e-79
 Identities = 135/186 (72%), Positives = 166/186 (89%)
 Frame = +1

Query: 1   DMYAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGV 180
           +MYAKCGSLE AR +F  M +KNVI+WT MISA AMHGDA +AL+ F QM+  N+EPNG+
Sbjct: 398 EMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGI 457

Query: 181 TFVGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIES 360
           TFVGVLYACSHAGLVEEG+ +F SM+++++ITPKH HYGCMVDL+GRANL+++AL+L+E+
Sbjct: 458 TFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEA 517

Query: 361 MPFAPNVIIWGSLMSACKIHGEFELGEFAAKQLLKLDPDHDGAHVFLSNIYAKEKRWHHV 540
           MP APNVIIWGSLM+AC++HGE ELGEFAAK+LL+LDPDHDGAHVFLSNIYAK +RW  V
Sbjct: 518 MPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDV 577

Query: 541 GEVRQL 558
           G+VR+L
Sbjct: 578 GQVRKL 583



 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 44/142 (30%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
 Frame = +1

Query: 7   YAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGVTF 186
           Y+K G +ENAR VF  M +K+++ W+ MIS  A       AL +F +M+S  ++P+ VT 
Sbjct: 299 YSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTM 358

Query: 187 VGVLYACSHAGLVEEGQ--NLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIES 360
           + V+ AC+H G +++ +  +LF          P +     ++++Y +   +++A ++ + 
Sbjct: 359 LSVITACAHLGALDQAKWIHLFVDKNGFGGALPIN---NALIEMYAKCGSLERARRIFDK 415

Query: 361 MPFAPNVIIWGSLMSACKIHGE 426
           MP   NVI W  ++SA  +HG+
Sbjct: 416 MP-RKNVISWTCMISAFAMHGD 436



 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 47/156 (30%), Positives = 78/156 (50%)
 Frame = +1

Query: 4   MYAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGVT 183
           MYA CG +  AR +F  M  ++V+TW+ MI      G  N+AL +F++MK+ NVEP+ + 
Sbjct: 166 MYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMM 225

Query: 184 FVGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIESM 363
              VL AC  AG +  G+ +   +M+   +   H     +V +Y     +  AL L E M
Sbjct: 226 LSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQ-SALVTMYASCGSMDLALNLFEKM 284

Query: 364 PFAPNVIIWGSLMSACKIHGEFELGEFAAKQLLKLD 471
               N++   ++++     G+ E       Q++K D
Sbjct: 285 T-PKNLVASTAMVTGYSKLGQIENARSVFNQMVKKD 319


>ref|XP_002315764.1| predicted protein [Populus trichocarpa] gi|222864804|gb|EEF01935.1|
           predicted protein [Populus trichocarpa]
          Length = 452

 Score =  291 bits (745), Expect = 5e-77
 Identities = 135/186 (72%), Positives = 164/186 (88%)
 Frame = +1

Query: 1   DMYAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGV 180
           DMYAKCG+L  AR VF  MQ +NVI+WT+MI+A A+HGDA+NALK F QMK  N++PNGV
Sbjct: 123 DMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGV 182

Query: 181 TFVGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIES 360
           TFVGVLYACSHAGLVEEG+  FASM ++++ITPKHEHYGCMVDL+GRANL++ AL+L+E+
Sbjct: 183 TFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVET 242

Query: 361 MPFAPNVIIWGSLMSACKIHGEFELGEFAAKQLLKLDPDHDGAHVFLSNIYAKEKRWHHV 540
           MP APNV+IWGSLM+AC+IHGE ELGEFAAKQ+L+L+PDHDGA V LSNIYAK++RW  V
Sbjct: 243 MPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDV 302

Query: 541 GEVRQL 558
           GE+R L
Sbjct: 303 GELRNL 308



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 39/140 (27%), Positives = 78/140 (55%)
 Frame = +1

Query: 7   YAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGVTF 186
           Y++ G +E+AR +F  M++K+++ W+ MIS  A       AL +F +M+   ++P+ VT 
Sbjct: 24  YSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTI 83

Query: 187 VGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIESMP 366
           + V+ AC+  G+++  + +    +D+  +         ++D+Y +   +  A  + E M 
Sbjct: 84  LSVISACARLGVLDRAKWIH-MYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQ 142

Query: 367 FAPNVIIWGSLMSACKIHGE 426
            + NVI W S+++A  IHG+
Sbjct: 143 -SRNVISWTSMINAFAIHGD 161


>ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512069|gb|AES93692.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  286 bits (731), Expect = 2e-75
 Identities = 130/185 (70%), Positives = 166/185 (89%)
 Frame = +1

Query: 1   DMYAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGV 180
           DMYAKCG+L  AREVF +M +KNVI+W++MI+A AMHG+A++A+K+F++MK  N+EPNGV
Sbjct: 397 DMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGV 456

Query: 181 TFVGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIES 360
           TF+GVLYAC HAGLVEEG+ LF+SM++++ I+P  EHYGCMVDLY RAN ++KA++LIE+
Sbjct: 457 TFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIET 516

Query: 361 MPFAPNVIIWGSLMSACKIHGEFELGEFAAKQLLKLDPDHDGAHVFLSNIYAKEKRWHHV 540
           MPFAPNVIIWGSLMSAC++HGE ELGEFAAK+LL+L+PDHDGA V LSNIYAKEKRW+ V
Sbjct: 517 MPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDV 576

Query: 541 GEVRQ 555
           G +R+
Sbjct: 577 GLIRK 581



 Score = 84.0 bits (206), Expect = 2e-14
 Identities = 47/170 (27%), Positives = 91/170 (53%)
 Frame = +1

Query: 7   YAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGVTF 186
           YAK G +++AR +F  M +++++ W+ MIS  A       ALK+F +M      P+ +T 
Sbjct: 298 YAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITM 357

Query: 187 VGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIESMP 366
           + V+ ACSH G + +  N   + +D+            ++D+Y +   + KA ++ E+MP
Sbjct: 358 LSVISACSHVGALAQA-NWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMP 416

Query: 367 FAPNVIIWGSLMSACKIHGEFELGEFAAKQLLKLDPDHDGAHVFLSNIYA 516
              NVI W S+++A  +HG  +      +++ +++ + +G   F+  +YA
Sbjct: 417 -RKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGV-TFIGVLYA 464



 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 36/156 (23%), Positives = 79/156 (50%)
 Frame = +1

Query: 4   MYAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGVT 183
           MYA C  + +AR +F  M   + + W  +I     +G  ++AL++F+ M+S++++P+ V 
Sbjct: 165 MYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVI 224

Query: 184 FVGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIESM 363
              VL AC HAG +  G+ +   + D  +    H     ++++Y     +  A ++ + +
Sbjct: 225 LCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQ-TALINMYANCGAMDLARKIYDGL 283

Query: 364 PFAPNVIIWGSLMSACKIHGEFELGEFAAKQLLKLD 471
             + ++I+  +++S     G  +   F   Q+++ D
Sbjct: 284 S-SKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERD 318


>ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  281 bits (720), Expect = 4e-74
 Identities = 131/186 (70%), Positives = 162/186 (87%)
 Frame = +1

Query: 1   DMYAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGV 180
           DMYAKCG+L  AREVF +M +KNVI+W++MI+A AMHGDA++A+ +F +MK  N+EPNGV
Sbjct: 392 DMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGV 451

Query: 181 TFVGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIES 360
           TF+GVLYACSHAGLVEEGQ  F+SM++++ I+P+ EHYGCMVDLY RAN ++KA++LIE+
Sbjct: 452 TFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIET 511

Query: 361 MPFAPNVIIWGSLMSACKIHGEFELGEFAAKQLLKLDPDHDGAHVFLSNIYAKEKRWHHV 540
           MPF PNVIIWGSLMSAC+ HGE ELGEFAA +LL+L+PDHDGA V LSNIYAKEKRW  V
Sbjct: 512 MPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDV 571

Query: 541 GEVRQL 558
           G VR+L
Sbjct: 572 GLVRKL 577



 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 40/140 (28%), Positives = 79/140 (56%)
 Frame = +1

Query: 7   YAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGVTF 186
           YAK G +++AR +F  M +K+++ W+ MIS  A       AL++F +M+   + P+ +T 
Sbjct: 293 YAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITM 352

Query: 187 VGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIESMP 366
           + V+ AC++ G + + + +  +  D+            ++D+Y +   + KA ++ E+MP
Sbjct: 353 LSVISACANVGALVQAKWIH-TYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMP 411

Query: 367 FAPNVIIWGSLMSACKIHGE 426
              NVI W S+++A  +HG+
Sbjct: 412 -RKNVISWSSMINAFAMHGD 430



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 37/138 (26%), Positives = 70/138 (50%)
 Frame = +1

Query: 4   MYAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGVT 183
           MYA CG + +AR +F  M  ++V+TW  MI   + +   ++ LK++++MK++  EP+ + 
Sbjct: 160 MYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAII 219

Query: 184 FVGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIESM 363
              VL AC+HAG +  G+ +   + D       H     +V++Y     +  A ++ + +
Sbjct: 220 LCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTS-LVNMYANCGAMHLAREVYDQL 278

Query: 364 PFAPNVIIWGSLMSACKI 417
           P    V+    L    K+
Sbjct: 279 PSKHMVVSTAMLSGYAKL 296


>ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297314084|gb|EFH44507.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 725

 Score =  274 bits (701), Expect = 6e-72
 Identities = 124/184 (67%), Positives = 159/184 (86%)
 Frame = +1

Query: 1   DMYAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGV 180
           +MYAKCG L+ AR+VF  M  +NV++W++MI+A AMHG+A+++L +F QMK  NVEPN V
Sbjct: 390 NMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEV 449

Query: 181 TFVGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIES 360
           TFVGVLY CSH+GLVEEG+ +FASM D+Y+ITPK EHYGCMVDL+GRANL+++AL++IES
Sbjct: 450 TFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIES 509

Query: 361 MPFAPNVIIWGSLMSACKIHGEFELGEFAAKQLLKLDPDHDGAHVFLSNIYAKEKRWHHV 540
           MP APNV+IWGSLMSAC++HGE ELGE AAK++LKL+PDHDGA V +SNIYA+E RW +V
Sbjct: 510 MPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREYRWDYV 569

Query: 541 GEVR 552
             +R
Sbjct: 570 RIIR 573



 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 45/161 (27%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
 Frame = +1

Query: 7   YAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGVTF 186
           Y+K G L++AR +F   + K+++ WTTMISA A       AL++F++M  + ++P+ VT 
Sbjct: 291 YSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTM 350

Query: 187 VGVLYACSHAGLVEEGQ--NLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIES 360
           + V+ AC + G +++ +  + +  +     + P       ++++Y +   +  A  + E 
Sbjct: 351 LSVISACVNLGTLDKAKWVHRYTHLNGLESVLPID---NALINMYAKCGGLDAARDVFEK 407

Query: 361 MPFAPNVIIWGSLMSACKIHGEF--ELGEFAAKQLLKLDPD 477
           MP   NV+ W S+++A  +HGE    L  FA  +   ++P+
Sbjct: 408 MP-TRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPN 447



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 35/121 (28%), Positives = 61/121 (50%)
 Frame = +1

Query: 1   DMYAKCGSLENAREVFVHMQQKNVITWTTMISALAMHGDANNALKIFQQMKSANVEPNGV 180
           DMYA CG +  AR VF  M Q++V+TW TMI      G  + A K+F++MK +NV P+ +
Sbjct: 157 DMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEM 216

Query: 181 TFVGVLYACSHAGLVEEGQNLFASMMDQYHITPKHEHYGCMVDLYGRANLIQKALQLIES 360
               ++ AC   G +   + ++  +++   +         +V +Y  A  +  A++    
Sbjct: 217 ILCNIVSACGRTGNMRYNRAIYDFLIEN-DVRMDTHLLTALVTMYAGAGCMDMAMEFFRK 275

Query: 361 M 363
           M
Sbjct: 276 M 276