BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00026180
         (618 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531249.1| hypothetical protein RCOM_0494170 [Ricinus c...   113   2e-23
ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatu...   104   1e-20
ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...    96   4e-18
gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]          87   2e-15
gb|ABD28710.1| Polynucleotidyl transferase, Ribonuclease H fold ...    85   1e-14

>ref|XP_002531249.1| hypothetical protein RCOM_0494170 [Ricinus communis]
           gi|223529168|gb|EEF31146.1| hypothetical protein
           RCOM_0494170 [Ricinus communis]
          Length = 329

 Score =  113 bits (283), Expect = 2e-23
 Identities = 62/152 (40%), Positives = 84/152 (55%)
 Frame = -3

Query: 511 PPDTGWYKVNVDAAIIEGSSSFKVGMVLRNDKGEFVTGMNKCFQGAVSVMEAEANGVYEA 332
           PP  G+ K NVD A+   S     GMV+R+  G FV G +    G  +V  AEA G+ EA
Sbjct: 170 PPQPGFVKCNVDGAVFTASGRSGFGMVIRDSAGSFVMGADGSSPGLFNVKLAEAIGLREA 229

Query: 331 LCWIDKLGTKNAVVECDSLSVVDAVLKNTAFFSEIGNTLDCCRSILRQRKDLKVQYVRRQ 152
           + W+  LG  N + E D+  VVDAVL   A   E G  +  CR +L+   +  VQ++R+Q
Sbjct: 230 VQWVLSLGRSNVIFEYDAKVVVDAVLSGAADLFEFGAVIADCRLLLQHGCNYSVQFIRKQ 289

Query: 151 ANSVAHSLAKLPCLLGTVNSFNFPPPCVVELI 56
           AN VAHSLA+   L    N F+ PP C+  L+
Sbjct: 290 ANLVAHSLARASHLQDGFNMFSVPPDCIRNLV 321


>ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatula]
           gi|355487250|gb|AES68453.1| 60S ribosomal protein L23
           [Medicago truncatula]
          Length = 547

 Score =  104 bits (260), Expect = 1e-20
 Identities = 54/138 (39%), Positives = 80/138 (57%)
 Frame = -3

Query: 532 QD*YYAQPPDTGWYKVNVDAAIIEGSSSFKVGMVLRNDKGEFVTGMNKCFQGAVSVMEAE 353
           QD    QPP  G+ K NVDAAI    + F  GM +R+ +G F+      ++G     EAE
Sbjct: 52  QDTIAWQPPAAGFLKCNVDAAIFSEQNRFGTGMCVRDQRGRFLKAATNWYEGCPPPQEAE 111

Query: 352 ANGVYEALCWIDKLGTKNAVVECDSLSVVDAVLKNTAFFSEIGNTLDCCRSILRQRKDLK 173
           A G+ +A+ W+ +L   N  +E D   VVD++       +E G+ +D CRS+L+Q  + K
Sbjct: 112 AVGLRDAILWLGQLELSNVQLELDCKLVVDSIYDKNNNQAEFGSIIDDCRSLLQQFTNFK 171

Query: 172 VQYVRRQANSVAHSLAKL 119
           + +VRRQAN VAHS A++
Sbjct: 172 ISFVRRQANVVAHSFARV 189


>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
            At1g65750-like [Vitis vinifera]
          Length = 820

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 1/157 (0%)
 Frame = -3

Query: 514  QPPDTGWYKVNVDAAIIEGSSSFKVGMVLRNDKGEFVTGMNKCFQGAVSVMEAEANGVYE 335
            Q PD GW K+NVD A+     +  +G V R+ +G F+ G  K F         EA GV E
Sbjct: 665  QKPDYGWIKINVDGAVFPDKGA--IGAVFRDHQGRFMGGFAKPFPHQTLPKVVEALGVRE 722

Query: 334  ALCWIDKLGTKNAVVECDSLSVVDAVLKNTAFFSEIGNTLDCCRSILRQRKDLKVQYVRR 155
             L WI +      VVE D L VV A+   +   +  G  +  C  +L+   D++V Y RR
Sbjct: 723  VLSWIHERSRSRIVVETDCLRVVQAIQHKSCPNTSFGFIIVDCLDVLQHLVDVQVVYARR 782

Query: 154  QANSVAHSLAKLPCLLGTVNSFNF-PPPCVVELIMYD 47
             ANS AH LA   C   +++ + + PP C++  + YD
Sbjct: 783  SANSAAHCLANGACSFTSLHIWGYTPPQCILSCLHYD 819


>gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]
          Length = 593

 Score = 87.4 bits (215), Expect = 2e-15
 Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
 Frame = -3

Query: 508 PDTGWYKVNVDAAIIEGSSSFKVGMVLRNDKGEFVTGMNKCFQGAVSVMEAEANGVYEAL 329
           P  G+YK+NVDA +       +VG+V+R+D G FV    + F   V     E   VY  L
Sbjct: 439 PTAGFYKINVDAGL-RAERGGQVGIVVRDDTGAFVMATTRSFPNLVHPTLLEGQAVYTGL 497

Query: 328 CWIDKLGTKNAVVECDSLSVVDAVLKNTAFFSEIGNTLDCCRSILRQRKDLKVQYVRRQA 149
            + + LG +   +E D L VV  + K     S++ N +D C+ +L   + +++ +VRR+A
Sbjct: 498 EFANALGLERVELESDCLPVVMQLSKGYTDRSDLSNIIDDCKMLLSNFQQVRIAHVRREA 557

Query: 148 NSVAHSLAKLPCLLG-TVNSFNFPPPCVVELIMYDA 44
           N  AH +AK+       +  F++PP C+  +I  +A
Sbjct: 558 NQAAHEMAKMTIPPDRELLVFSWPPDCICSIIEKEA 593


>gb|ABD28710.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 393

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 4/155 (2%)
 Frame = -3

Query: 508 PDTGWYKVNVDAAIIEGSSSFKVGMVLRNDKGEFVTGMNKCFQGAVSVMEAEANGVYEAL 329
           P +G  K NVDA+    S+   +GM +R+ +G  V      F     V   EA G+Y A 
Sbjct: 237 PKSGRLKCNVDASFSTSSNKVGIGMCIRDSEGNHVRSKTMWFSPLCPVNIGEALGLYHAT 296

Query: 328 CWIDKLGTKNAVVECDSLSVVDAVLK----NTAFFSEIGNTLDCCRSILRQRKDLKVQYV 161
            WI++L   N   E DS ++ D   K    NT F S + NT+  C   L    +  V++ 
Sbjct: 297 RWINELQLTNVDFEVDSKTIADYFNKARGDNTEFGSIMENTIQFCNIFL---TNSHVEFT 353

Query: 160 RRQANSVAHSLAKLPCLLGTVNSFNFPPPCVVELI 56
           RRQAN VAH LAK   L  + + F+  P C+ +LI
Sbjct: 354 RRQANEVAHELAKAATLGPSFHIFDESPTCISDLI 388