BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00026157
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    99   3e-19
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    97   1e-18
gb|AAC24057.1| Contains similarity to reverse transcriptase-like...    94   9e-18
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              94   9e-18
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    89   4e-16

>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 46/106 (43%), Positives = 72/106 (67%)
 Frame = +1

Query: 4   NLHKSNVFFANAPIPVVDWFQNNYNVPHGKLPVRFLGVPLISSMLSINDCIPLIQKLRKR 183
           ++ KS ++ A     V       ++   GKLPVR+LG+PL+S  L+ +DC+PLI++LRK+
Sbjct: 625 SMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKK 684

Query: 184 IGSWTCKFLSYGGRLVLIRSTIFAIQSFWSAHFILPSSVLNLIDQI 321
           I +WT +FLS+ GRL LI ST+++I +FW A F LP + +  ID++
Sbjct: 685 IEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDKL 730


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 46/106 (43%), Positives = 70/106 (66%)
 Frame = +1

Query: 4    NLHKSNVFFANAPIPVVDWFQNNYNVPHGKLPVRFLGVPLISSMLSINDCIPLIQKLRKR 183
            +L KS V+ A       +   + +    G+LPVR+LG+PLI+  LS  DC+PL++++RKR
Sbjct: 737  SLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKR 796

Query: 184  IGSWTCKFLSYGGRLVLIRSTIFAIQSFWSAHFILPSSVLNLIDQI 321
            IGSWT +FLSY GRL LI S +++I +FW A F LP   +  ++++
Sbjct: 797  IGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKM 842


>gb|AAC24057.1| Contains similarity to reverse transcriptase-like protein
           gb|2244803 from A. thaliana chromosome 4 contig
           gb|Z97336 [Arabidopsis thaliana]
          Length = 404

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 45/106 (42%), Positives = 67/106 (63%)
 Frame = +1

Query: 4   NLHKSNVFFANAPIPVVDWFQNNYNVPHGKLPVRFLGVPLISSMLSINDCIPLIQKLRKR 183
           ++ KS +F A           + Y    G LPVR+LG+PL++  LS  D +PL++K+R+R
Sbjct: 30  SMEKSTLFLAGTSATAHQTITSTYPFSVGTLPVRYLGLPLVNKRLSAADYLPLLEKIRQR 89

Query: 184 IGSWTCKFLSYGGRLVLIRSTIFAIQSFWSAHFILPSSVLNLIDQI 321
           IGSWT +FLS+ GRL LI S +++I +FW A F LP   +  +D+I
Sbjct: 90  IGSWTARFLSFAGRLNLISSVLWSICNFWMAAFRLPRGCIREVDKI 135


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 44/106 (41%), Positives = 68/106 (64%)
 Frame = +1

Query: 4   NLHKSNVFFANAPIPVVDWFQNNYNVPHGKLPVRFLGVPLISSMLSINDCIPLIQKLRKR 183
           ++ KS ++ A     V    QN Y    G+LPVR+LG+PL++  L+  D  PL++ ++K+
Sbjct: 264 SMEKSTIYLAGVTEDVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLLEHIKKK 323

Query: 184 IGSWTCKFLSYGGRLVLIRSTIFAIQSFWSAHFILPSSVLNLIDQI 321
           IG+WT ++LSY GRL LI S +++I +FW A F LP   +  ID+I
Sbjct: 324 IGTWTTRYLSYAGRLNLITSVLWSICNFWLAAFRLPRECIREIDKI 369


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 42/106 (39%), Positives = 65/106 (61%)
 Frame = +1

Query: 4    NLHKSNVFFANAPIPVVDWFQNNYNVPHGKLPVRFLGVPLISSMLSINDCIPLIQKLRKR 183
            +L KS +F A+            +    G LPVR+LG+PL++  +++ DC+PL++K+R R
Sbjct: 992  SLEKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSR 1051

Query: 184  IGSWTCKFLSYGGRLVLIRSTIFAIQSFWSAHFILPSSVLNLIDQI 321
            I SW  +FLSY GRL L+ S I ++  FW + F LP + +  I+QI
Sbjct: 1052 ISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQI 1097