BLASTX nr result

ID: Bupleurum21_contig00025349 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00025349
         (560 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001045195.1| Os01g0916600 [Oryza sativa Japonica Group] g...    68   1e-09
gb|AFP57450.1| RNA-binding glycine-rich protein [Nicotiana goods...    67   1e-09
ref|XP_002522811.1| glycine-rich RNA-binding protein, putative [...    67   1e-09
ref|XP_002318570.1| predicted protein [Populus trichocarpa] gi|2...    67   1e-09
ref|XP_002328668.1| predicted protein [Populus trichocarpa] gi|2...    67   1e-09

>ref|NP_001045195.1| Os01g0916600 [Oryza sativa Japonica Group]
           gi|2624328|emb|CAA05729.1| OsGRP2 [Oryza sativa Japonica
           Group] gi|19386753|dbj|BAB86134.1| OsGRP2 [Oryza sativa
           Japonica Group] gi|20805007|dbj|BAB92683.1| OsGRP2
           [Oryza sativa Japonica Group]
           gi|113534726|dbj|BAF07109.1| Os01g0916600 [Oryza sativa
           Japonica Group] gi|125528847|gb|EAY76961.1| hypothetical
           protein OsI_04919 [Oryza sativa Indica Group]
           gi|125573102|gb|EAZ14617.1| hypothetical protein
           OsJ_04542 [Oryza sativa Japonica Group]
           gi|215765299|dbj|BAG86996.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215768370|dbj|BAH00599.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 150

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 31/47 (65%), Positives = 38/47 (80%)
 Frame = +2

Query: 2   RETNRSRGFGFVSFVDAESASSAQKAMDGQELDGRTLRVNEATERPP 142
           RE+ RSRGFGFVSF + + A SA  AMDG+EL+GR++RVN A ERPP
Sbjct: 72  RESGRSRGFGFVSFANGDDAKSAMDAMDGKELEGRSIRVNFANERPP 118


>gb|AFP57450.1| RNA-binding glycine-rich protein [Nicotiana goodspeedii]
          Length = 144

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 33/48 (68%), Positives = 38/48 (79%)
 Frame = +2

Query: 2   RETNRSRGFGFVSFVDAESASSAQKAMDGQELDGRTLRVNEATERPPR 145
           R++ RSRGFGFV+F D ESA+ A KAMDGQEL GR +RVN A ER PR
Sbjct: 73  RDSGRSRGFGFVNFSDDESANEAIKAMDGQELQGRNIRVNIAQERAPR 120


>ref|XP_002522811.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
           gi|223538049|gb|EEF39662.1| glycine-rich RNA-binding
           protein, putative [Ricinus communis]
          Length = 134

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 33/48 (68%), Positives = 37/48 (77%)
 Frame = +2

Query: 2   RETNRSRGFGFVSFVDAESASSAQKAMDGQELDGRTLRVNEATERPPR 145
           R+T RSRGFGFV F   +SASSA  AMDGQEL GR +RV+ ATER PR
Sbjct: 71  RDTGRSRGFGFVDFSSVDSASSALSAMDGQELHGRNIRVSYATERAPR 118


>ref|XP_002318570.1| predicted protein [Populus trichocarpa] gi|222859243|gb|EEE96790.1|
           predicted protein [Populus trichocarpa]
          Length = 255

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 32/48 (66%), Positives = 39/48 (81%)
 Frame = +2

Query: 2   RETNRSRGFGFVSFVDAESASSAQKAMDGQELDGRTLRVNEATERPPR 145
           RET RSRGFGFV++  +E ASSA +A+DGQ+L GR +RVN ATERP R
Sbjct: 75  RETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYATERPQR 122


>ref|XP_002328668.1| predicted protein [Populus trichocarpa] gi|222838844|gb|EEE77195.1|
           predicted protein [Populus trichocarpa]
          Length = 142

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 32/48 (66%), Positives = 39/48 (81%)
 Frame = +2

Query: 2   RETNRSRGFGFVSFVDAESASSAQKAMDGQELDGRTLRVNEATERPPR 145
           R+T RSRGFGFV++  +E ASSA +AMDGQ+L GR +RVN ATERP R
Sbjct: 75  RDTGRSRGFGFVTYTSSEEASSAIQAMDGQDLHGRRVRVNYATERPQR 122


Top