BLASTX nr result

ID: Bupleurum21_contig00025280 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00025280
         (412 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003612653.1| ATP-dependent DNA helicase PIF1 [Medicago tr...   101   5e-20
ref|XP_003609124.1| ATP-dependent DNA helicase PIF1 [Medicago tr...   101   7e-20
ref|XP_003609074.1| ATP-dependent DNA helicase PIF1 [Medicago tr...   101   7e-20
ref|XP_003606913.1| ATP-dependent DNA helicase PIF1 [Medicago tr...   101   7e-20
gb|ADB85380.1| putative retrotransposon protein [Phyllostachys e...    94   1e-17

>ref|XP_003612653.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
            gi|355513988|gb|AES95611.1| ATP-dependent DNA helicase
            PIF1 [Medicago truncatula]
          Length = 1427

 Score =  101 bits (252), Expect = 5e-20
 Identities = 50/131 (38%), Positives = 79/131 (60%)
 Frame = +2

Query: 2    LGSDDDWHTTLKEASQHQTGRQLRHLFVTMLLFCDISDVGTLWNKSWKLMSDDIEYNHRR 181
            L  + +W+  L EASQ  TG QLR LFVT+LL+ +++D+G LW  +WK +SDDI Y  R 
Sbjct: 804  LNDNKEWNDALNEASQWATGTQLRELFVTILLYGEVADIGKLWETNWKTLSDDIVYKKRI 863

Query: 182  RFVEYNYKINENQLQSLTLYDVDMQLRKIGKSLSDFPTLPPLDHALQQKSQNTLLYEEYM 361
             F     ++N+ Q+QS  L ++D  L + G  LSDF  +P  +    + ++N L+ EE  
Sbjct: 864  LFQHSRLELNDEQIQSYCLIEIDKILVRAGSYLSDFDGMPLPNSESFEATENRLIVEELS 923

Query: 362  YDRHFLQQQSQ 394
            Y+   L+++ +
Sbjct: 924  YNVDDLKKEHE 934


>ref|XP_003609124.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
            gi|355510179|gb|AES91321.1| ATP-dependent DNA helicase
            PIF1 [Medicago truncatula]
          Length = 1558

 Score =  101 bits (251), Expect = 7e-20
 Identities = 50/131 (38%), Positives = 79/131 (60%)
 Frame = +2

Query: 2    LGSDDDWHTTLKEASQHQTGRQLRHLFVTMLLFCDISDVGTLWNKSWKLMSDDIEYNHRR 181
            L  + +W+  L EASQ  TG QLR LFVT+LL+ +++D+G LW  +WK +SDDI Y  R 
Sbjct: 804  LNDNREWNDALNEASQWATGTQLRELFVTILLYGEVADIGKLWETNWKTLSDDIVYKKRI 863

Query: 182  RFVEYNYKINENQLQSLTLYDVDMQLRKIGKSLSDFPTLPPLDHALQQKSQNTLLYEEYM 361
             F     ++N+ Q+QS  L ++D  L + G  LSDF  +P  +    + ++N L+ EE  
Sbjct: 864  LFQHSRLELNDEQIQSYCLIEIDKILVRAGSYLSDFDGMPLPNSESFEATENRLIVEELS 923

Query: 362  YDRHFLQQQSQ 394
            Y+   L+++ +
Sbjct: 924  YNVDDLKKEHE 934


>ref|XP_003609074.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
            gi|355510129|gb|AES91271.1| ATP-dependent DNA helicase
            PIF1 [Medicago truncatula]
          Length = 1531

 Score =  101 bits (251), Expect = 7e-20
 Identities = 50/131 (38%), Positives = 79/131 (60%)
 Frame = +2

Query: 2    LGSDDDWHTTLKEASQHQTGRQLRHLFVTMLLFCDISDVGTLWNKSWKLMSDDIEYNHRR 181
            L  + +W+  L EASQ  TG QLR LFVT+LL+ +++D+G LW  +WK +SDDI Y  R 
Sbjct: 777  LNDNREWNDALNEASQWATGTQLRELFVTILLYGEVADIGKLWETNWKTLSDDIVYKKRI 836

Query: 182  RFVEYNYKINENQLQSLTLYDVDMQLRKIGKSLSDFPTLPPLDHALQQKSQNTLLYEEYM 361
             F     ++N+ Q+QS  L ++D  L + G  LSDF  +P  +    + ++N L+ EE  
Sbjct: 837  LFQHSRLELNDEQIQSYCLIEIDKILVRAGSYLSDFDGMPLPNSESFEATENRLIVEELS 896

Query: 362  YDRHFLQQQSQ 394
            Y+   L+++ +
Sbjct: 897  YNVDDLKKEHE 907


>ref|XP_003606913.1| ATP-dependent DNA helicase PIF1 [Medicago truncatula]
            gi|355507968|gb|AES89110.1| ATP-dependent DNA helicase
            PIF1 [Medicago truncatula]
          Length = 1558

 Score =  101 bits (251), Expect = 7e-20
 Identities = 50/131 (38%), Positives = 79/131 (60%)
 Frame = +2

Query: 2    LGSDDDWHTTLKEASQHQTGRQLRHLFVTMLLFCDISDVGTLWNKSWKLMSDDIEYNHRR 181
            L  + +W+  L EASQ  TG QLR LFVT+LL+ +++D+G LW  +WK +SDDI Y  R 
Sbjct: 804  LNDNREWNDALNEASQWATGTQLRELFVTILLYGEVADIGKLWETNWKTLSDDIVYKKRI 863

Query: 182  RFVEYNYKINENQLQSLTLYDVDMQLRKIGKSLSDFPTLPPLDHALQQKSQNTLLYEEYM 361
             F     ++N+ Q+QS  L ++D  L + G  LSDF  +P  +    + ++N L+ EE  
Sbjct: 864  LFQHSRLELNDEQIQSYCLIEIDKILVRAGSYLSDFDGMPLPNSESFEATENRLIVEELS 923

Query: 362  YDRHFLQQQSQ 394
            Y+   L+++ +
Sbjct: 924  YNVDDLKKEHE 934


>gb|ADB85380.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1227

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 52/137 (37%), Positives = 80/137 (58%)
 Frame = +2

Query: 2    LGSDDDWHTTLKEASQHQTGRQLRHLFVTMLLFCDISDVGTLWNKSWKLMSDDIEYNHRR 181
            LG+D +W+ TL+EAS+  +  QLRHLFVTMLLFCDI+D  +L++K W  +++D +Y   R
Sbjct: 606  LGNDVEWYRTLEEASKWASSSQLRHLFVTMLLFCDINDEHSLFDKFWLDLAEDFKYRFCR 665

Query: 182  RFVEYNYKINENQLQSLTLYDVDMQLRKIGKSLSDFPTLPPLDHALQQKSQNTLLYEEYM 361
                  Y +  + L+ L L ++   L++ G  +S F  LP     L     N+++ +E  
Sbjct: 666  ATCNPYYVMPVDDLKDLLLDEISALLKRNGTRISSF-NLPARSGRLSHNYTNSMISDELS 724

Query: 362  YDRHFLQQQSQTLVSML 412
            YD   L  +S+ L SML
Sbjct: 725  YDITELSNESRKLCSML 741


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