BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00025246
         (1033 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]   202   3e-64
ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containi...   202   3e-64
ref|XP_002532584.1| pentatricopeptide repeat-containing protein,...   175   2e-54
ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containi...   163   2e-49
ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   163   2e-49

>emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]
          Length = 1173

 Score =  202 bits (513), Expect(2) = 3e-64
 Identities = 113/198 (57%), Positives = 135/198 (68%), Gaps = 4/198 (2%)
 Frame = -1

Query: 808 PLASENTHELRAQDVVLAFKQWFKSRQRYTRPNFDSIYTILSSTE----DAILIXXXXXX 641
           P+       L+A+DVVL+FKQWFKS Q       D I+ ILS       DA L       
Sbjct: 49  PVVLGGIGSLQAKDVVLSFKQWFKSPQNILL--MDQIFRILSDLPPDDADAAL-----GR 101

Query: 640 XXXXXXXXFVLDVLKSGDDVLSCLKFFDWAGRQRGFVHTRATYYAIFKILSKAKLMSLMT 461
                   FVLDVL  G DVLSCLKFFDWAGRQ GF HTRAT++A FKIL++AKLMSLM 
Sbjct: 102 LRLPLSERFVLDVLAHGSDVLSCLKFFDWAGRQPGFHHTRATFHATFKILARAKLMSLML 161

Query: 460 DFLDSFQTQSGVCKTRFYNTLVMGYAVAGKPDVALKLFAKMRFNGLDLDEYCYHVFLNAL 281
           DFL ++     V + RFY+TLVMGYAVAGKP++AL+LFAKMRF GLDLD + YHV LNAL
Sbjct: 162 DFLQNYTELRYVHRVRFYDTLVMGYAVAGKPEIALQLFAKMRFQGLDLDSFAYHVLLNAL 221

Query: 280 LNQGSFDAFDMVVKQIRI 227
           + +  FDAF +VV+QIR+
Sbjct: 222 VEENCFDAFRVVVEQIRM 239



 Score = 70.9 bits (172), Expect(2) = 3e-64
 Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
 Frame = -3

Query: 230 NNVTHAVLVKGLCKRNELDKAEHYTRELMESG-VGMS-EPVIGTLISGLCKNDKFERVAE 57
           N +TH+++VK  CK+ +LD+A+ +  +L+ESG VG+S   ++G ++  LCK  +F     
Sbjct: 244 NEITHSIIVKNFCKQGQLDEAKAFVEQLVESGRVGLSGGHMVGLIVDALCKRKRFGEAGR 303

Query: 56  LVEEFRGSGKVPMRTAY 6
           LVEEF+GSG V +  AY
Sbjct: 304 LVEEFQGSGMVSVEQAY 320


>ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Vitis vinifera]
          Length = 881

 Score =  202 bits (513), Expect(2) = 3e-64
 Identities = 113/198 (57%), Positives = 135/198 (68%), Gaps = 4/198 (2%)
 Frame = -1

Query: 808 PLASENTHELRAQDVVLAFKQWFKSRQRYTRPNFDSIYTILSSTE----DAILIXXXXXX 641
           P+       L+A+DVVL+FKQWFKS Q       D I+ ILS       DA L       
Sbjct: 49  PVVLGGIGSLQAKDVVLSFKQWFKSPQNILL--MDQIFRILSDLPPDDADAAL-----GR 101

Query: 640 XXXXXXXXFVLDVLKSGDDVLSCLKFFDWAGRQRGFVHTRATYYAIFKILSKAKLMSLMT 461
                   FVLDVL  G DVLSCLKFFDWAGRQ GF HTRAT++A FKIL++AKLMSLM 
Sbjct: 102 LRLPLSERFVLDVLAHGSDVLSCLKFFDWAGRQPGFHHTRATFHATFKILARAKLMSLML 161

Query: 460 DFLDSFQTQSGVCKTRFYNTLVMGYAVAGKPDVALKLFAKMRFNGLDLDEYCYHVFLNAL 281
           DFL ++     V + RFY+TLVMGYAVAGKP++AL+LFAKMRF GLDLD + YHV LNAL
Sbjct: 162 DFLQNYTELRYVHRVRFYDTLVMGYAVAGKPEIALQLFAKMRFQGLDLDSFAYHVLLNAL 221

Query: 280 LNQGSFDAFDMVVKQIRI 227
           + +  FDAF +VV+QIR+
Sbjct: 222 VEENCFDAFRVVVEQIRM 239



 Score = 70.9 bits (172), Expect(2) = 3e-64
 Identities = 33/77 (42%), Positives = 52/77 (67%), Gaps = 2/77 (2%)
 Frame = -3

Query: 230 NNVTHAVLVKGLCKRNELDKAEHYTRELMESG-VGMS-EPVIGTLISGLCKNDKFERVAE 57
           N +TH+++VK  CK+ +LD+A+ +  +L+ESG VG+S   ++G ++  LCK  +F     
Sbjct: 244 NEITHSIIVKNFCKQGQLDEAKAFVEQLVESGRVGLSGGHMVGLIVDALCKRKRFGEAGR 303

Query: 56  LVEEFRGSGKVPMRTAY 6
           LVEEF+GSG V +  AY
Sbjct: 304 LVEEFQGSGMVSVEQAY 320


>ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527693|gb|EEF29801.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 895

 Score =  175 bits (443), Expect(2) = 2e-54
 Identities = 105/216 (48%), Positives = 134/216 (62%), Gaps = 9/216 (4%)
 Frame = -1

Query: 847 LCYTTYRYSSVLA--PLASENTH-ELRAQDVVLAFKQWFKSRQRYTRPNFDSIYTILSST 677
           LCY  Y Y S L+  P+   N H     + VV +FK+WFK++        D ++ ILS+ 
Sbjct: 47  LCY--YHYYSTLSAIPIQQINFHPNYTYKHVVQSFKEWFKTQNNGF---LDRVFEILSNQ 101

Query: 676 EDAILIXXXXXXXXXXXXXXFVLDVLKSGD---DVLSCLKFFDWAGRQRGFVHTRATYYA 506
           ++   +               VLDVL  G+   DVLSCLKFFDWAGRQ GF HTRAT++A
Sbjct: 102 DEVDELALSQLGLRLTESL--VLDVLHYGNSKKDVLSCLKFFDWAGRQSGFYHTRATFHA 159

Query: 505 IFKILSKAKLMSLMTDFLDSFQTQ---SGVCKTRFYNTLVMGYAVAGKPDVALKLFAKMR 335
           IFKILSKAKLM LM DFLD++      +      FY+TL+MGY+VAGKP VAL+LF KMR
Sbjct: 160 IFKILSKAKLMQLMLDFLDNYMKHRFANHKLGYGFYSTLIMGYSVAGKPQVALQLFGKMR 219

Query: 334 FNGLDLDEYCYHVFLNALLNQGSFDAFDMVVKQIRI 227
           F G DLD + YH+ LN+L+ +  FDA D + KQI I
Sbjct: 220 FLGRDLDAFAYHILLNSLVEECCFDAVDDIAKQISI 255



 Score = 64.7 bits (156), Expect(2) = 2e-54
 Identities = 27/76 (35%), Positives = 47/76 (61%)
 Frame = -3

Query: 233 QNNVTHAVLVKGLCKRNELDKAEHYTRELMESGVGMSEPVIGTLISGLCKNDKFERVAEL 54
           ++++TH+++VK  CK+  LD+AE Y R ++  G   +   +G L+   C+  +FE+  +L
Sbjct: 259 ESHITHSIVVKSFCKQRMLDEAEAYLRRMILQGESGNGAAVGILVGAFCQKGQFEKAGQL 318

Query: 53  VEEFRGSGKVPMRTAY 6
           +EEFR    VP+  AY
Sbjct: 319 IEEFRELRVVPLYPAY 334


>ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Cucumis sativus]
          Length = 913

 Score =  163 bits (413), Expect(2) = 2e-49
 Identities = 96/204 (47%), Positives = 119/204 (58%), Gaps = 8/204 (3%)
 Frame = -1

Query: 814 LAPLASENTHELRAQDVVLAFKQWFKSRQRYTRPNFDSIYTILSSTEDAILIXXXXXXXX 635
           +A   S     +  ++V  +FK+WFKS    + P +  I+ IL    D   I        
Sbjct: 65  IASTLSAGADGMITKEVASSFKEWFKSG---SNPLYGKIFQILRGARDDQEIPYRPSAAD 121

Query: 634 XXXXXXF-------VLDVLKSGD-DVLSCLKFFDWAGRQRGFVHTRATYYAIFKILSKAK 479
                         VLDVL+ G  DVLSCLKFFDWAGRQ  F HTRAT+ AI KILSKAK
Sbjct: 122 LALSRLGLRLNESFVLDVLRFGSKDVLSCLKFFDWAGRQERFFHTRATFNAILKILSKAK 181

Query: 478 LMSLMTDFLDSFQTQSGVCKTRFYNTLVMGYAVAGKPDVALKLFAKMRFNGLDLDEYCYH 299
           L+SLM DFL++           FYN LVMGYA AGKP  AL LF KMRF GLDLD + YH
Sbjct: 182 LVSLMFDFLENCVQHKLYHMPCFYNILVMGYAAAGKPIFALHLFGKMRFQGLDLDPFSYH 241

Query: 298 VFLNALLNQGSFDAFDMVVKQIRI 227
           V LN+L+ +  FDA ++++KQI +
Sbjct: 242 VLLNSLVEENCFDAVNVIIKQITL 265



 Score = 60.1 bits (144), Expect(2) = 2e-49
 Identities = 27/75 (36%), Positives = 46/75 (61%)
 Frame = -3

Query: 230 NNVTHAVLVKGLCKRNELDKAEHYTRELMESGVGMSEPVIGTLISGLCKNDKFERVAELV 51
           N +TH +++K  CK+N+LD+AE +  +L++SG  ++  ++  L+   C++  FER  +LV
Sbjct: 270 NEITHYLMLKSFCKQNQLDEAETFLHDLVDSGKKLNGRMLDLLVGAFCQSGNFERAWKLV 329

Query: 50  EEFRGSGKVPMRTAY 6
           E FR    V M   Y
Sbjct: 330 EWFRDLQIVSMEHVY 344


>ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71210-like, partial [Cucumis sativus]
          Length = 889

 Score =  163 bits (413), Expect(2) = 2e-49
 Identities = 96/204 (47%), Positives = 119/204 (58%), Gaps = 8/204 (3%)
 Frame = -1

Query: 814 LAPLASENTHELRAQDVVLAFKQWFKSRQRYTRPNFDSIYTILSSTEDAILIXXXXXXXX 635
           +A   S     +  ++V  +FK+WFKS    + P +  I+ IL    D   I        
Sbjct: 41  IASTLSAGADGMITKEVASSFKEWFKSG---SNPLYGKIFQILRGARDDQEIPYRPSAAD 97

Query: 634 XXXXXXF-------VLDVLKSGD-DVLSCLKFFDWAGRQRGFVHTRATYYAIFKILSKAK 479
                         VLDVL+ G  DVLSCLKFFDWAGRQ  F HTRAT+ AI KILSKAK
Sbjct: 98  LALSRLGLRLNESFVLDVLRFGSKDVLSCLKFFDWAGRQERFFHTRATFNAILKILSKAK 157

Query: 478 LMSLMTDFLDSFQTQSGVCKTRFYNTLVMGYAVAGKPDVALKLFAKMRFNGLDLDEYCYH 299
           L+SLM DFL++           FYN LVMGYA AGKP  AL LF KMRF GLDLD + YH
Sbjct: 158 LVSLMFDFLENCVQHKLYHMPCFYNILVMGYAAAGKPIFALHLFGKMRFQGLDLDPFSYH 217

Query: 298 VFLNALLNQGSFDAFDMVVKQIRI 227
           V LN+L+ +  FDA ++++KQI +
Sbjct: 218 VLLNSLVEENCFDAVNVIIKQITL 241



 Score = 60.1 bits (144), Expect(2) = 2e-49
 Identities = 27/75 (36%), Positives = 46/75 (61%)
 Frame = -3

Query: 230 NNVTHAVLVKGLCKRNELDKAEHYTRELMESGVGMSEPVIGTLISGLCKNDKFERVAELV 51
           N +TH +++K  CK+N+LD+AE +  +L++SG  ++  ++  L+   C++  FER  +LV
Sbjct: 246 NEITHYLMLKSFCKQNQLDEAETFLHDLVDSGKKLNGRMLDLLVGAFCQSGNFERAWKLV 305

Query: 50  EEFRGSGKVPMRTAY 6
           E FR    V M   Y
Sbjct: 306 EWFRDLQIVSMEHVY 320