BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00025179
         (472 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containi...   209   2e-52
ref|XP_002332354.1| predicted protein [Populus trichocarpa] gi|2...   201   5e-50
ref|XP_002889127.1| pentatricopeptide repeat-containing protein ...   199   2e-49
ref|NP_177842.1| pentatricopeptide repeat-containing protein [Ar...   197   7e-49
ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containi...   192   3e-47

>ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
           [Vitis vinifera] gi|297738768|emb|CBI28013.3| unnamed
           protein product [Vitis vinifera]
          Length = 479

 Score =  209 bits (531), Expect = 2e-52
 Identities = 104/159 (65%), Positives = 126/159 (79%), Gaps = 3/159 (1%)
 Frame = +3

Query: 3   RVGVGPDCYTLPIVLKAXXXXXXXXXXXXXHAVAIRNGLQGDTFCESGFISLYSKGGVFE 182
           R GV PD YT+PIVLKA             H+VAIR+GL+ + +CESGFIS+YSK G F+
Sbjct: 122 RAGVSPDSYTIPIVLKAVCQAFATGFGRQVHSVAIRHGLELNEYCESGFISVYSKAGEFQ 181

Query: 183 FARKVFDENCERKLGSWNAIIGGLAQGGRAKEAVEMFIKLKKSGFKPD---VVSVTSACG 353
            A KVF++N  RKLGSWNAIIGGL+QGGRAKEAV MF++++K GF+PD   +VSVTSACG
Sbjct: 182 NAHKVFEQNRFRKLGSWNAIIGGLSQGGRAKEAVTMFMEMRKCGFEPDEVTMVSVTSACG 241

Query: 354 SLGNLDLALQLHKCVYQARSMEKSDMLMCNSLIDMYGKC 470
           SLG+LDLALQLHKCVYQA++ E+SD L  NSL+DMYGKC
Sbjct: 242 SLGHLDLALQLHKCVYQAKTSERSDTLTLNSLVDMYGKC 280


>ref|XP_002332354.1| predicted protein [Populus trichocarpa] gi|222832075|gb|EEE70552.1|
           predicted protein [Populus trichocarpa]
          Length = 254

 Score =  201 bits (511), Expect = 5e-50
 Identities = 104/157 (66%), Positives = 119/157 (75%), Gaps = 3/157 (1%)
 Frame = +3

Query: 9   GVGPDCYTLPIVLKAXXXXXXXXXXXXXHAVAIRNGLQGDTFCESGFISLYSKGGVFEFA 188
           G+ PD YTLPIVLKA             H++AIR GL+ + +CESGFISLYSK G F  A
Sbjct: 71  GISPDNYTLPIVLKAACQCFSMELGRQLHSIAIRLGLELNEYCESGFISLYSKSGDFGDA 130

Query: 189 RKVFDENCERKLGSWNAIIGGLAQGGRAKEAVEMFIKLKKSGFKPD---VVSVTSACGSL 359
            KVF+EN ERKLGSWNAIIGGL QGGRAKE +EMFI+++  GFKPD   +VSVTSACG L
Sbjct: 131 YKVFEENLERKLGSWNAIIGGLCQGGRAKEVIEMFIEMRSCGFKPDDVTMVSVTSACGIL 190

Query: 360 GNLDLALQLHKCVYQARSMEKSDMLMCNSLIDMYGKC 470
           G+L LALQLHK V+QA+S  K DMLM NSLIDMYGKC
Sbjct: 191 GDLHLALQLHKYVFQAKSFVKPDMLMLNSLIDMYGKC 227


>ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297334968|gb|EFH65386.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 466

 Score =  199 bits (506), Expect = 2e-49
 Identities = 102/159 (64%), Positives = 119/159 (74%), Gaps = 3/159 (1%)
 Frame = +3

Query: 3   RVGVGPDCYTLPIVLKAXXXXXXXXXXXXXHAVAIRNGLQGDTFCESGFISLYSKGGVFE 182
           R  V PD YTLPIV+KA             H+VA+R G  GD FCESGFI+LY K G  E
Sbjct: 109 RSNVLPDRYTLPIVIKAAVQIHDFPLGKQLHSVAVRLGFVGDEFCESGFITLYCKAGELE 168

Query: 183 FARKVFDENCERKLGSWNAIIGGLAQGGRAKEAVEMFIKLKKSGFKPD---VVSVTSACG 353
            AR VFDEN ERKLGSWNAIIGGL   GRA EAVEMF+++++SGF+PD   +VSVTSACG
Sbjct: 169 NARNVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFMEMRRSGFEPDDFTMVSVTSACG 228

Query: 354 SLGNLDLALQLHKCVYQARSMEKSDMLMCNSLIDMYGKC 470
            LG+L+LA QLHKCV QA++ EKSD++M NSLIDMYGKC
Sbjct: 229 GLGDLNLAFQLHKCVLQAKTEEKSDVMMMNSLIDMYGKC 267



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
 Frame = +3

Query: 3   RVGVGPDCYTLPIVLKAXXXXXXXXXXXXXHAVAIRNGLQ--GDTFCESGFISLYSKGGV 176
           R G  PD +T+  V  A             H   ++   +   D    +  I +Y K G 
Sbjct: 210 RSGFEPDDFTMVSVTSACGGLGDLNLAFQLHKCVLQAKTEEKSDVMMMNSLIDMYGKCGR 269

Query: 177 FEFARKVFDENCERKLGSWNAIIGGLAQGGRAKEAVEMFIKLKKSGFKPD---VVSVTSA 347
            +FA +VF+E  +R + SW+++I G A  G   EA+E F ++++ G +P+    V V SA
Sbjct: 270 MDFAIQVFEEMPQRNVVSWSSMITGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSA 329

Query: 348 C 350
           C
Sbjct: 330 C 330


>ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g77170 gi|332197823|gb|AEE35944.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 467

 Score =  197 bits (501), Expect = 7e-49
 Identities = 101/159 (63%), Positives = 118/159 (74%), Gaps = 3/159 (1%)
 Frame = +3

Query: 3   RVGVGPDCYTLPIVLKAXXXXXXXXXXXXXHAVAIRNGLQGDTFCESGFISLYSKGGVFE 182
           R  V PD Y+LPIV+KA             H+VA+R G  GD FCESGFI+LY K G FE
Sbjct: 110 RSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCKAGEFE 169

Query: 183 FARKVFDENCERKLGSWNAIIGGLAQGGRAKEAVEMFIKLKKSGFKPD---VVSVTSACG 353
            ARKVFDEN ERKLGSWNAIIGGL   GRA EAVEMF+ +K+SG +PD   +VSVT++CG
Sbjct: 170 NARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCG 229

Query: 354 SLGNLDLALQLHKCVYQARSMEKSDMLMCNSLIDMYGKC 470
            LG+L LA QLHKCV QA++ EKSD++M NSLIDMYGKC
Sbjct: 230 GLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKC 268


>ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77170-like [Cucumis sativus]
          Length = 609

 Score =  192 bits (487), Expect = 3e-47
 Identities = 100/159 (62%), Positives = 118/159 (74%), Gaps = 3/159 (1%)
 Frame = +3

Query: 3   RVGVGPDCYTLPIVLKAXXXXXXXXXXXXXHAVAIRNGLQGDTFCESGFISLYSKGGVFE 182
           R G+ PDCYTLPIV KA             H+VAIR G + D + ESG ISLYSK G  E
Sbjct: 252 RAGILPDCYTLPIVFKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLE 311

Query: 183 FARKVFDENCERKLGSWNAIIGGLAQGGRAKEAVEMFIKLKKSGFKPD---VVSVTSACG 353
            A KVF++N  RKLGSWNAII GL+QGGRAKEAV MFIKL++SG +PD   +VSVTSACG
Sbjct: 312 CACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACG 371

Query: 354 SLGNLDLALQLHKCVYQARSMEKSDMLMCNSLIDMYGKC 470
           SLGNL+L+LQ+HK V+Q +   KS++LM NSLIDMYGKC
Sbjct: 372 SLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKC 410