BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00025014
         (981 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatu...    79   4e-14
ref|XP_002531759.1| conserved hypothetical protein [Ricinus comm...    82   3e-13
ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...    74   1e-12
ref|XP_002532007.1| conserved hypothetical protein [Ricinus comm...    79   1e-12
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    70   8e-10

>ref|XP_003598202.1| 60S ribosomal protein L23 [Medicago truncatula]
           gi|355487250|gb|AES68453.1| 60S ribosomal protein L23
           [Medicago truncatula]
          Length = 547

 Score = 79.3 bits (194), Expect(2) = 4e-14
 Identities = 44/144 (30%), Positives = 71/144 (49%)
 Frame = -3

Query: 466 WVRPQKNCVKINCDASVFENSRSFGIGWIARDDNGEIICATGLSFVGKPEIHWAEAIGVR 287
           W  P    +K N DA++F     FG G   RD  G  + A    + G P    AEA+G+R
Sbjct: 57  WQPPAAGFLKCNVDAAIFSEQNRFGTGMCVRDQRGRFLKAATNWYEGCPPPQEAEAVGLR 116

Query: 286 EALSWIKMEEARRAGIGDIQPRAYTVESDCQVVIRAIKNEEPIYSPFGSTIEECRKIVDA 107
           +A+ W          +G ++     +E DC++V+ +I ++    + FGS I++CR ++  
Sbjct: 117 DAILW----------LGQLELSNVQLELDCKLVVDSIYDKNNNQAEFGSIIDDCRSLLQQ 166

Query: 106 MNNLDIVFVKRSGNRAADWLAHSY 35
             N  I FV+R  N     +AHS+
Sbjct: 167 FTNFKISFVRRQAN----VVAHSF 186



 Score = 25.4 bits (54), Expect(2) = 4e-14
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 599 RNDVVWNNQNPRAAQVVSIAKAYLTQW 519
           RND VW+ Q   +   V +A+  L QW
Sbjct: 10  RNDKVWDGQLQPSNIAVQLARELLFQW 36


>ref|XP_002531759.1| conserved hypothetical protein [Ricinus communis]
           gi|223528595|gb|EEF30615.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 163

 Score = 81.6 bits (200), Expect = 3e-13
 Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 2/143 (1%)
 Frame = -3

Query: 466 WVRPQKNCVKINCDASVFENSRSFGIGWIARDDNGEIICATGLSFVGK--PEIHWAEAIG 293
           W  P    +K+N DA++F N  S G+G + +D  G  +CA  +SF G   PEI  AE + 
Sbjct: 28  WNTPSLGSMKVNMDATIFSNPDSMGVGCVMKDHAGLFVCAMAVSFAGAYIPEI--AEGLA 85

Query: 292 VREALSWIKMEEARRAGIGDIQPRAYTVESDCQVVIRAIKNEEPIYSPFGSTIEECRKIV 113
           ++EALSW +          D Q      E DC  ++ A+  +    S  G  I++C+ + 
Sbjct: 86  IQEALSWAR----------DRQLLNVVFELDCLHIVEALLRKGTDRSSLGLIIKDCKLLS 135

Query: 112 DAMNNLDIVFVKRSGNRAADWLA 44
            +++N    FVKRS N  A  LA
Sbjct: 136 SSISNCSFAFVKRSRNEVAHKLA 158


>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
            At1g65750-like [Vitis vinifera]
          Length = 820

 Score = 73.6 bits (179), Expect(2) = 1e-12
 Identities = 53/174 (30%), Positives = 83/174 (47%)
 Frame = -3

Query: 526  HNGRCLTPVIPVESTGGLERWVRPQKNCVKINCDASVFENSRSFGIGWIARDDNGEIICA 347
            H    L   + V S     +W +P    +KIN D +VF +  +  IG + RD  G  +  
Sbjct: 646  HANETLATAVTVPSYSS--KWQKPDYGWIKINVDGAVFPDKGA--IGAVFRDHQGRFMGG 701

Query: 346  TGLSFVGKPEIHWAEAIGVREALSWIKMEEARRAGIGDIQPRAYTVESDCQVVIRAIKNE 167
                F  +      EA+GVRE LSWI   E  R+ I         VE+DC  V++AI+++
Sbjct: 702  FAKPFPHQTLPKVVEALGVREVLSWI--HERSRSRI--------VVETDCLRVVQAIQHK 751

Query: 166  EPIYSPFGSTIEECRKIVDAMNNLDIVFVKRSGNRAADWLAHSYPGCIFRGGHV 5
                + FG  I +C  ++  + ++ +V+ +RS N AA  LA+    C F   H+
Sbjct: 752  SCPNTSFGFIIVDCLDVLQHLVDVQVVYARRSANSAAHCLANG--ACSFTSLHI 803



 Score = 26.2 bits (56), Expect(2) = 1e-12
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 599 RNDVVWNNQNPRAAQVVSIAKAYLTQW 519
           RNDVVWN +   + QVV+     L  W
Sbjct: 618 RNDVVWNGRIWHSQQVVNGCFTMLESW 644


>ref|XP_002532007.1| conserved hypothetical protein [Ricinus communis]
           gi|223528338|gb|EEF30380.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 273

 Score = 79.3 bits (194), Expect = 1e-12
 Identities = 55/167 (32%), Positives = 77/167 (46%), Gaps = 1/167 (0%)
 Frame = -3

Query: 541 QRLILHNGRCLTPVIPVESTGGLERWVRPQKNCVKINCDASVFENSRSFGIGWIARDDNG 362
           QR I      +   +P   + G+  W  P +  +K N D  VF  +   G G+I ++D+G
Sbjct: 106 QRCIAQKRNDVHQNVPAHQSSGI--WTCPVEGWLKCNIDVVVFVANNRLGFGFIFQNDSG 163

Query: 361 EIICATGLSFVGKPEIHWAEAIGVREALSWIKMEEARRAGIGDIQPRAYTV-ESDCQVVI 185
               AT     G  +   AEA+ +RE L W+K  +             Y V ESDC  ++
Sbjct: 164 TFRAATNGLISGPLDPQVAEALSLREDLCWVKGLDLN-----------YVVSESDCLTLV 212

Query: 184 RAIKNEEPIYSPFGSTIEECRKIVDAMNNLDIVFVKRSGNRAADWLA 44
            A+       S FG  I +CR  +  MN+  IVFVKR GNR A  LA
Sbjct: 213 NAVNKVGVNSSLFGLLIGDCRSFLKEMNHAHIVFVKRFGNRVAHLLA 259


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 70.1 bits (170), Expect = 8e-10
 Identities = 44/146 (30%), Positives = 65/146 (44%)
 Frame = -3

Query: 481  GGLERWVRPQKNCVKINCDASVFENSRSFGIGWIARDDNGEIICATGLSFVGKPEIHWAE 302
            G L RW  P    +K+NCD +     R FG G I RD+ G +I A G +F        AE
Sbjct: 1485 GSLRRWQAPSSGQLKVNCDGAANFKDRCFGGGTIIRDEFGSLIVAGGKNFQHPVSSLVAE 1544

Query: 301  AIGVREALSWIKMEEARRAGIGDIQPRAYTVESDCQVVIRAIKNEEPIYSPFGSTIEECR 122
             + ++  L  +     R             VESDC   I  + ++E   +P G  +E+ +
Sbjct: 1545 LLAIKVGLDLVVERRLRN----------IMVESDCLEAIHLLNSKERCLAPEGGLVEDIQ 1594

Query: 121  KIVDAMNNLDIVFVKRSGNRAADWLA 44
              +  +N   I  V+R GN AA  +A
Sbjct: 1595 NTMALVNISSIYHVRREGNTAAHAIA 1620