BLASTX nr result

ID: Bupleurum21_contig00024933 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00024933
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACR09748.1| DIV3B protein [Heptacodium miconioides]                142   4e-32
ref|XP_002314123.1| predicted protein [Populus trichocarpa] gi|2...   136   2e-30
ref|XP_002534707.1| DNA binding protein, putative [Ricinus commu...   136   2e-30
emb|CBI16001.3| unnamed protein product [Vitis vinifera]              134   1e-29
ref|XP_002280403.1| PREDICTED: uncharacterized protein LOC100244...   132   2e-29

>gb|ACR09748.1| DIV3B protein [Heptacodium miconioides]
          Length = 318

 Score =  142 bits (357), Expect = 4e-32
 Identities = 72/116 (62%), Positives = 86/116 (74%), Gaps = 17/116 (14%)
 Frame = -1

Query: 351 LGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITTASLVN 172
           LGLKKYGKGDWRNISRN+VT+RTPTQVASHAQKY+IRQLSGGKDKRRSSIHDITT +L++
Sbjct: 153 LGLKKYGKGDWRNISRNYVTTRTPTQVASHAQKYYIRQLSGGKDKRRSSIHDITTVNLID 212

Query: 171 TKSTSPEDIK-----------------TQAPNIIGMEEVLHNWNLQNQGAIMAFDM 55
           +KS SP++ K                  Q  N+ GM + L++W   NQGA MAFD+
Sbjct: 213 SKSPSPDNNKQPSLGHSTAVLQQQPQLQQNSNMSGMVKALYDWGGPNQGATMAFDL 268


>ref|XP_002314123.1| predicted protein [Populus trichocarpa] gi|222850531|gb|EEE88078.1|
           predicted protein [Populus trichocarpa]
          Length = 308

 Score =  136 bits (343), Expect = 2e-30
 Identities = 69/107 (64%), Positives = 78/107 (72%), Gaps = 9/107 (8%)
 Frame = -1

Query: 351 LGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITTASLVN 172
           +GLKKYGKGDWRNISRNFV SRTPTQVASHAQKYFIRQLSGGKDKRR+SIHDITT +L  
Sbjct: 148 MGLKKYGKGDWRNISRNFVISRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLNE 207

Query: 171 TKSTSPEDIKT---------QAPNIIGMEEVLHNWNLQNQGAIMAFD 58
           T++ SP++ +T         Q PN   M      WN  N GA MAF+
Sbjct: 208 TRTPSPDNKRTSPDQSGAISQQPNSAAMPRTHFQWNQPNSGATMAFN 254


>ref|XP_002534707.1| DNA binding protein, putative [Ricinus communis]
           gi|223524722|gb|EEF27676.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 307

 Score =  136 bits (342), Expect = 2e-30
 Identities = 68/108 (62%), Positives = 82/108 (75%), Gaps = 10/108 (9%)
 Frame = -1

Query: 351 LGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITTASLVN 172
           +GL+KYGKGDWRNISRNFVT+RTPTQVASHAQKYFIRQ +GGKDKRRSSIHDITT +L +
Sbjct: 149 MGLQKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQSTGGKDKRRSSIHDITTVNLPD 208

Query: 171 TKSTSPEDIK----------TQAPNIIGMEEVLHNWNLQNQGAIMAFD 58
           TKS SPE  K           Q+P ++G+ + L +W  QN+GA   F+
Sbjct: 209 TKSPSPESKKPSSPDHCITTMQSPKMVGVAKGLLDWKPQNEGAAAVFN 256


>emb|CBI16001.3| unnamed protein product [Vitis vinifera]
          Length = 215

 Score =  134 bits (336), Expect = 1e-29
 Identities = 65/98 (66%), Positives = 78/98 (79%)
 Frame = -1

Query: 351 LGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITTASLVN 172
           LGLKKYGKGDWRNISRNFV +RTPTQVASHAQKYFIRQLSGGKDKRR+SIHDITT +L +
Sbjct: 69  LGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTD 128

Query: 171 TKSTSPEDIKTQAPNIIGMEEVLHNWNLQNQGAIMAFD 58
           T++ SPE+ +  +P     ++    W+  N GA MAF+
Sbjct: 129 TRTPSPENKRPPSP-----DQTTFQWSQPNSGAPMAFN 161


>ref|XP_002280403.1| PREDICTED: uncharacterized protein LOC100244960 [Vitis vinifera]
           gi|147844863|emb|CAN81229.1| hypothetical protein
           VITISV_033664 [Vitis vinifera]
          Length = 307

 Score =  132 bits (333), Expect = 2e-29
 Identities = 67/108 (62%), Positives = 78/108 (72%), Gaps = 10/108 (9%)
 Frame = -1

Query: 351 LGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITTASLVN 172
           LGLKKYGKGDWRNISRNFV +RTPTQVASHAQKYFIRQLSGGKDKRR+SIHDITT +L +
Sbjct: 146 LGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTD 205

Query: 171 TKSTSPEDIK----------TQAPNIIGMEEVLHNWNLQNQGAIMAFD 58
           T++ SPE+ +           + PN   M      W+  N GA MAF+
Sbjct: 206 TRTPSPENKRPPSPDQSIGVPKQPNSAPMNRTTFQWSQPNSGAPMAFN 253


Top