BLASTX nr result

ID: Bupleurum21_contig00024909 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00024909
         (366 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003624927.1| Tubulin beta chain [Medicago truncatula] gi|...   162   2e-38
gb|EEC79224.1| hypothetical protein OsI_19960 [Oryza sativa Indi...   160   8e-38
gb|EEE63725.1| hypothetical protein OsJ_18543 [Oryza sativa Japo...   160   8e-38
emb|CBI32808.3| unnamed protein product [Vitis vinifera]              160   1e-37
ref|NP_001239638.1| beta-tubulin [Glycine max] gi|62546343|gb|AA...   160   1e-37

>ref|XP_003624927.1| Tubulin beta chain [Medicago truncatula]
           gi|355499942|gb|AES81145.1| Tubulin beta chain [Medicago
           truncatula]
          Length = 527

 Score =  162 bits (411), Expect = 2e-38
 Identities = 75/84 (89%), Positives = 80/84 (95%)
 Frame = +3

Query: 114 TQQAQKEKMREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGKYVGKSDLQLERVNVYYN 293
           +Q+ +  KMREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG+YVG SDLQLERVNVYYN
Sbjct: 71  SQEKKFNKMREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYN 130

Query: 294 EASCGRYVPRAVLMDLEPGTMDSV 365
           EASCGR+VPRAVLMDLEPGTMDSV
Sbjct: 131 EASCGRFVPRAVLMDLEPGTMDSV 154


>gb|EEC79224.1| hypothetical protein OsI_19960 [Oryza sativa Indica Group]
          Length = 624

 Score =  160 bits (406), Expect = 8e-38
 Identities = 73/79 (92%), Positives = 77/79 (97%)
 Frame = +3

Query: 129 KEKMREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGKYVGKSDLQLERVNVYYNEASCG 308
           +EKMREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTG+Y G SDLQLERVNVYYNEASCG
Sbjct: 178 EEKMREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCG 237

Query: 309 RYVPRAVLMDLEPGTMDSV 365
           R+VPRAVLMDLEPGTMDSV
Sbjct: 238 RFVPRAVLMDLEPGTMDSV 256


>gb|EEE63725.1| hypothetical protein OsJ_18543 [Oryza sativa Japonica Group]
          Length = 624

 Score =  160 bits (406), Expect = 8e-38
 Identities = 73/79 (92%), Positives = 77/79 (97%)
 Frame = +3

Query: 129 KEKMREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGKYVGKSDLQLERVNVYYNEASCG 308
           +EKMREILH+QGGQCGNQIGSKFWEVVCDEHGIDPTG+Y G SDLQLERVNVYYNEASCG
Sbjct: 178 EEKMREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAGTSDLQLERVNVYYNEASCG 237

Query: 309 RYVPRAVLMDLEPGTMDSV 365
           R+VPRAVLMDLEPGTMDSV
Sbjct: 238 RFVPRAVLMDLEPGTMDSV 256


>emb|CBI32808.3| unnamed protein product [Vitis vinifera]
          Length = 276

 Score =  160 bits (405), Expect = 1e-37
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +3

Query: 135 KMREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGKYVGKSDLQLERVNVYYNEASCGRY 314
           KMREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTG+YVG SDLQLERVNVYYNEASCGR+
Sbjct: 21  KMREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGTSDLQLERVNVYYNEASCGRF 80

Query: 315 VPRAVLMDLEPGTMDSV 365
           VPRAVLMDLEPGTMDSV
Sbjct: 81  VPRAVLMDLEPGTMDSV 97


>ref|NP_001239638.1| beta-tubulin [Glycine max] gi|62546343|gb|AAX86048.1| tubulin B4
           [Glycine max]
          Length = 449

 Score =  160 bits (404), Expect = 1e-37
 Identities = 74/76 (97%), Positives = 75/76 (98%)
 Frame = +3

Query: 138 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGKYVGKSDLQLERVNVYYNEASCGRYV 317
           MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGKYVG SDLQLERVNVYYNEASCGR+V
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGKYVGNSDLQLERVNVYYNEASCGRFV 60

Query: 318 PRAVLMDLEPGTMDSV 365
           PRAVLMDLEPGTMDSV
Sbjct: 61  PRAVLMDLEPGTMDSV 76


Top