BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00024739
         (493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...    84   2e-24
gb|AAT58873.1| hypothetical protein [Oryza sativa Japonica Group]      83   2e-23
gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago t...    80   1e-22
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S...    72   1e-20
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...    73   2e-20

>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score = 83.6 bits (205), Expect(2) = 2e-24
 Identities = 42/88 (47%), Positives = 61/88 (69%)
 Frame = +3

Query: 117 INEYGIISGQAINYQKSGIFFSANVRRDKQLEIKNILEVHNELKDSKYLGLPSLVGRSKK 296
           ++ Y   S Q IN QKS I+FS NV   K+  + N+L V   +   KYLGLPS++GRSKK
Sbjct: 295 LDTYANASDQLINMQKSEIYFSRNVPVTKKNTLSNMLWVSEGIGIRKYLGLPSMIGRSKK 354

Query: 297 SVFNFIKDRVGHRVQDWNNKLLSKAEKQ 380
           S+FN+IKDR+ +R+   ++K+LS+A K+
Sbjct: 355 SIFNYIKDRIWNRISGLSSKMLSQAGKE 382



 Score = 53.9 bits (128), Expect(2) = 2e-24
 Identities = 20/39 (51%), Positives = 31/39 (79%)
 Frame = +2

Query: 374 KTIMVKNVGQSIPSYAMSCFLIPKSLCLEIERLLNGYWW 490
           K +++K+V Q+IPSY MS FL+P S+  +IE++LN +WW
Sbjct: 381 KEVLIKSVAQAIPSYCMSVFLLPHSIADDIEKMLNSFWW 419


>gb|AAT58873.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 1264

 Score = 82.8 bits (203), Expect(2) = 2e-23
 Identities = 37/88 (42%), Positives = 58/88 (65%)
 Frame = +3

Query: 117  INEYGIISGQAINYQKSGIFFSANVRRDKQLEIKNILEVHNELKDSKYLGLPSLVGRSKK 296
            +N Y + SGQ IN  KS + FS N  +  ++E+++ L ++ E K+ +YLGLP  +G+S++
Sbjct: 1051 LNIYEVASGQVINKDKSSVLFSPNTLQSDRMEVRSALCINQEAKNERYLGLPVSIGKSRR 1110

Query: 297  SVFNFIKDRVGHRVQDWNNKLLSKAEKQ 380
              F +IK +V  R+Q W  KLLSKA K+
Sbjct: 1111 KAFEYIKRKVWLRIQGWQEKLLSKAGKE 1138



 Score = 50.8 bits (120), Expect(2) = 2e-23
 Identities = 21/39 (53%), Positives = 29/39 (74%)
 Frame = +2

Query: 374  KTIMVKNVGQSIPSYAMSCFLIPKSLCLEIERLLNGYWW 490
            K I+VK V Q+IP+YAMSCF + K LC EI  +++ +WW
Sbjct: 1137 KEILVKAVAQAIPTYAMSCFDLTKGLCDEINSMISKWWW 1175


>gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago truncatula]
          Length = 405

 Score = 79.7 bits (195), Expect(2) = 1e-22
 Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
 Frame = +3

Query: 75  LFCYN--FELQSFIYYINEYGIISGQAINYQKSGIFFSANVRRDKQLEIKNILEVHNELK 248
           LFC     E Q  +  +  Y   SGQ IN  KS +FFS N+    Q ++  I+ V + + 
Sbjct: 75  LFCRANVVEAQRLLTILKTYEAASGQEINLSKSEVFFSRNMSGAAQEDLSRIIGVRHVMG 134

Query: 249 DSKYLGLPSLVGRSKKSVFNFIKDRVGHRVQDWNNKLLSKAEKQ 380
             KYLGLPS++ R K SVF+FIKD +  R+  W  + LSKA K+
Sbjct: 135 TGKYLGLPSMIDRDKWSVFSFIKDSIWKRINVWRGRALSKAGKE 178



 Score = 51.6 bits (122), Expect(2) = 1e-22
 Identities = 20/39 (51%), Positives = 31/39 (79%)
 Frame = +2

Query: 374 KTIMVKNVGQSIPSYAMSCFLIPKSLCLEIERLLNGYWW 490
           K +M+K+V QSIPSY MS +L+P S+  +IE+++N +WW
Sbjct: 177 KEVMIKSVLQSIPSYIMSIYLLPSSVIDDIEKMVNAFWW 215


>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
           gi|241926916|gb|EES00061.1| hypothetical protein
           SORBIDRAFT_03g001780 [Sorghum bicolor]
          Length = 631

 Score = 72.4 bits (176), Expect(2) = 1e-20
 Identities = 35/88 (39%), Positives = 54/88 (61%)
 Frame = +3

Query: 117 INEYGIISGQAINYQKSGIFFSANVRRDKQLEIKNILEVHNELKDSKYLGLPSLVGRSKK 296
           ++ Y   SGQ IN +KS + FS N  +  +  +++ L + +E    KYLGLP  +G+S+K
Sbjct: 284 LDVYEKASGQVINKEKSSMMFSPNTGQHDRSLMRSNLSITDEASTEKYLGLPVNIGKSRK 343

Query: 297 SVFNFIKDRVGHRVQDWNNKLLSKAEKQ 380
             F +IK ++  R+Q W  KLLSKA K+
Sbjct: 344 KPFEYIKKKIWSRIQGWQEKLLSKAGKE 371



 Score = 52.4 bits (124), Expect(2) = 1e-20
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +2

Query: 374 KTIMVKNVGQSIPSYAMSCFLIPKSLCLEIERLLNGYWW 490
           K I++K V QSIP+YAMSCF + K LC E+  ++  YWW
Sbjct: 370 KEILIKAVAQSIPTYAMSCFDLTKGLCDELSSIIGRYWW 408


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score = 73.2 bits (178), Expect(2) = 2e-20
 Identities = 40/89 (44%), Positives = 51/89 (57%)
 Frame = +3

Query: 126  YGIISGQAINYQKSGIFFSANVRRDKQLEIKNILEVHNELKDSKYLGLPSLVGRSKKSVF 305
            Y   SGQ IN QKS I F + V    Q ++K ILE+ N+    KYLGLP   GR KK +F
Sbjct: 862  YEYYSGQKINVQKSMITFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMF 921

Query: 306  NFIKDRVGHRVQDWNNKLLSKAEKQ*WLR 392
             +I DRV  R   W+ + LS A K+  L+
Sbjct: 922  EYIIDRVKKRTSTWSARFLSPAGKEIMLK 950



 Score = 50.8 bits (120), Expect(2) = 2e-20
 Identities = 21/40 (52%), Positives = 29/40 (72%)
 Frame = +2

Query: 374  KTIMVKNVGQSIPSYAMSCFLIPKSLCLEIERLLNGYWWK 493
            K IM+K+V  ++P YAMSCF +PK +  EIE LL  +WW+
Sbjct: 945  KEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWE 984