BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00024729
         (845 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indi...   159   3e-59
ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group] g...   159   3e-59
ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containi...   156   4e-59
ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat...   154   2e-57
ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily...   167   2e-57

>gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  159 bits (401), Expect(2) = 3e-59
 Identities = 72/146 (49%), Positives = 106/146 (72%)
 Frame = +2

Query: 17  ERDFVAWNAMISGFAVNGLSKEALQVFNDMLQLSVPPTEITFIHILSVCAHAGLIHEGWK 196
           ++D V WNAMI+G+A++G S++AL++F+ +    + PT+ITFI +L+ C+H+GL+ EG +
Sbjct: 326 DKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQ 385

Query: 197 IFHLMIDEYGIEPKIEHYGCMVNLLGRAGQLNEAFELVRAMNIHPDHIIWRTLIGGCELH 376
            F  M +EY I PKIEHYGCMV+LLGRAG + EAF LV++M I PD ++W +L+  C LH
Sbjct: 386 FFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLH 445

Query: 377 GNSGLGEEIVDLHINWNLASSGACVL 454
            N  LG++I D  +   LA+SG  +L
Sbjct: 446 KNMALGQQIADYLVAGGLANSGMYIL 471



 Score = 96.7 bits (239), Expect(2) = 3e-59
 Identities = 45/75 (60%), Positives = 57/75 (76%)
 Frame = +1

Query: 454 SNMYAVAGNWNGVARVRTKMKDTGIQKEPGCSSIEVNNTVHEFLAGDTSHPRRKEIYMML 633
           SN+YA  GNW  VARVR+ MK +GIQKEPGCS+IEV   V+EF+AGD SHPR  EIY ML
Sbjct: 473 SNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAML 532

Query: 634 EEINRCLEDYGNSTQ 678
           E++N  +++ G+  Q
Sbjct: 533 EKMNGIVKEQGHVPQ 547



 Score = 66.2 bits (160), Expect = 9e-09
 Identities = 34/122 (27%), Positives = 61/122 (50%)
 Frame = +2

Query: 20  RDFVAWNAMISGFAVNGLSKEALQVFNDMLQLSVPPTEITFIHILSVCAHAGLIHEGWKI 199
           +DF+ WNAMI G+  +G   EAL++F  ML+  V P E+  I  LS  A  G    G  +
Sbjct: 225 KDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWL 284

Query: 200 FHLMIDEYGIEPKIEHYGCMVNLLGRAGQLNEAFELVRAMNIHPDHIIWRTLIGGCELHG 379
              + +   ++        ++++  + G L +A  +  ++    D ++W  +I G  +HG
Sbjct: 285 HSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG-DKDIVVWNAMINGYAMHG 343

Query: 380 NS 385
           +S
Sbjct: 344 DS 345


>ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
           gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR)
           repeat-containing protein-like [Oryza sativa Japonica
           Group] gi|24414055|dbj|BAC22304.1| pentatricopeptide
           (PPR) repeat-containing protein-like [Oryza sativa
           Japonica Group] gi|113610284|dbj|BAF20662.1|
           Os07g0113500 [Oryza sativa Japonica Group]
           gi|125598898|gb|EAZ38474.1| hypothetical protein
           OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  159 bits (401), Expect(2) = 3e-59
 Identities = 72/146 (49%), Positives = 106/146 (72%)
 Frame = +2

Query: 17  ERDFVAWNAMISGFAVNGLSKEALQVFNDMLQLSVPPTEITFIHILSVCAHAGLIHEGWK 196
           ++D V WNAMI+G+A++G S++AL++F+ +    + PT+ITFI +L+ C+H+GL+ EG +
Sbjct: 325 DKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQ 384

Query: 197 IFHLMIDEYGIEPKIEHYGCMVNLLGRAGQLNEAFELVRAMNIHPDHIIWRTLIGGCELH 376
            F  M +EY I PKIEHYGCMV+LLGRAG + EAF LV++M I PD ++W +L+  C LH
Sbjct: 385 FFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLH 444

Query: 377 GNSGLGEEIVDLHINWNLASSGACVL 454
            N  LG++I D  +   LA+SG  +L
Sbjct: 445 KNMALGQQIADYLVAGGLANSGMYIL 470



 Score = 96.7 bits (239), Expect(2) = 3e-59
 Identities = 45/75 (60%), Positives = 57/75 (76%)
 Frame = +1

Query: 454 SNMYAVAGNWNGVARVRTKMKDTGIQKEPGCSSIEVNNTVHEFLAGDTSHPRRKEIYMML 633
           SN+YA  GNW  VARVR+ MK +GIQKEPGCS+IEV   V+EF+AGD SHPR  EIY ML
Sbjct: 472 SNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAML 531

Query: 634 EEINRCLEDYGNSTQ 678
           E++N  +++ G+  Q
Sbjct: 532 EKMNGIVKEQGHVPQ 546



 Score = 66.2 bits (160), Expect = 9e-09
 Identities = 34/122 (27%), Positives = 61/122 (50%)
 Frame = +2

Query: 20  RDFVAWNAMISGFAVNGLSKEALQVFNDMLQLSVPPTEITFIHILSVCAHAGLIHEGWKI 199
           +DF+ WNAMI G+  +G   EAL++F  ML+  V P E+  I  LS  A  G    G  +
Sbjct: 224 KDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWL 283

Query: 200 FHLMIDEYGIEPKIEHYGCMVNLLGRAGQLNEAFELVRAMNIHPDHIIWRTLIGGCELHG 379
              + +   ++        ++++  + G L +A  +  ++    D ++W  +I G  +HG
Sbjct: 284 HSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG-DKDIVVWNAMINGYAMHG 342

Query: 380 NS 385
           +S
Sbjct: 343 DS 344


>ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
            chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  156 bits (395), Expect(2) = 4e-59
 Identities = 72/146 (49%), Positives = 106/146 (72%)
 Frame = +2

Query: 17   ERDFVAWNAMISGFAVNGLSKEALQVFNDMLQLSVPPTEITFIHILSVCAHAGLIHEGWK 196
            ++D V WNAMI+G+A++G S++AL++F    +  + PT+ITFI +L+ C+H+G++ EG +
Sbjct: 583  DKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGRE 642

Query: 197  IFHLMIDEYGIEPKIEHYGCMVNLLGRAGQLNEAFELVRAMNIHPDHIIWRTLIGGCELH 376
             F  M  EYGI+PKIEHYGCMV+LLGRAG + EAF LV++M I PD ++W +L+  C LH
Sbjct: 643  FFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLH 702

Query: 377  GNSGLGEEIVDLHINWNLASSGACVL 454
             N  LG++I D  +   LA+SG  +L
Sbjct: 703  KNMSLGQQIADYLVAKGLANSGMYIL 728



 Score = 98.6 bits (244), Expect(2) = 4e-59
 Identities = 44/75 (58%), Positives = 60/75 (80%)
 Frame = +1

Query: 454 SNMYAVAGNWNGVARVRTKMKDTGIQKEPGCSSIEVNNTVHEFLAGDTSHPRRKEIYMML 633
           SN+YA  GNW  VARVR+ MK +GIQKEPGCSSIE++  V+EF+AGD SHPR  EIY+ML
Sbjct: 730 SNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVML 789

Query: 634 EEINRCLEDYGNSTQ 678
           +++N  ++++G+  Q
Sbjct: 790 DKMNGLVKEHGHVPQ 804



 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 35/122 (28%), Positives = 64/122 (52%)
 Frame = +2

Query: 20  RDFVAWNAMISGFAVNGLSKEALQVFNDMLQLSVPPTEITFIHILSVCAHAGLIHEGWKI 199
           +DFV WNAMI G+  +G   EAL++F  ML   V P E+T + +LS  A  G +  G  +
Sbjct: 482 KDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWL 541

Query: 200 FHLMIDEYGIEPKIEHYGCMVNLLGRAGQLNEAFELVRAMNIHPDHIIWRTLIGGCELHG 379
              + +   ++  +     ++++  + G L +A ++   +    D ++W  +I G  +HG
Sbjct: 542 HSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIG-DKDIVVWNAMINGYAMHG 600

Query: 380 NS 385
           +S
Sbjct: 601 DS 602


>ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  154 bits (390), Expect(2) = 2e-57
 Identities = 68/146 (46%), Positives = 104/146 (71%)
 Frame = +2

Query: 17  ERDFVAWNAMISGFAVNGLSKEALQVFNDMLQLSVPPTEITFIHILSVCAHAGLIHEGWK 196
           +RD + +N MISG ++NG S++A+++F  M+   + PT +TF+ +L+ C+H GL+  G+K
Sbjct: 341 DRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFK 400

Query: 197 IFHLMIDEYGIEPKIEHYGCMVNLLGRAGQLNEAFELVRAMNIHPDHIIWRTLIGGCELH 376
           IFH M  +YG+EP+IEHYGCMV+LLGR G+L EA++L+R M + PDHI+  TL+  C++H
Sbjct: 401 IFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMH 460

Query: 377 GNSGLGEEIVDLHINWNLASSGACVL 454
            N  LGE++  +  +   A SG  VL
Sbjct: 461 KNLELGEQVAKVLEDRGQADSGTYVL 486



 Score = 94.7 bits (234), Expect(2) = 2e-57
 Identities = 42/67 (62%), Positives = 52/67 (77%)
 Frame = +1

Query: 454 SNMYAVAGNWNGVARVRTKMKDTGIQKEPGCSSIEVNNTVHEFLAGDTSHPRRKEIYMML 633
           S++YA +G W   A+VR KMK+ G+QKEPGCSSIEVNN +HEFL GD  HPR++ IY  L
Sbjct: 488 SHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKL 547

Query: 634 EEINRCL 654
           EE+NR L
Sbjct: 548 EELNRLL 554



 Score = 63.5 bits (153), Expect = 6e-08
 Identities = 41/137 (29%), Positives = 65/137 (47%)
 Frame = +2

Query: 20  RDFVAWNAMISGFAVNGLSKEALQVFNDMLQLSVPPTEITFIHILSVCAHAGLIHEGWKI 199
           +D V W AMI GF  N     AL+ F  M   +V P E T + +LS C+  G +  G + 
Sbjct: 241 KDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG-RW 299

Query: 200 FHLMIDEYGIEPKIEHYGCMVNLLGRAGQLNEAFELVRAMNIHPDHIIWRTLIGGCELHG 379
            H  + ++ IE  +     ++N+  R G ++EA  +   M    D I + T+I G  ++G
Sbjct: 300 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMK-DRDVITYNTMISGLSMNG 358

Query: 380 NSGLGEEIVDLHINWNL 430
            S    E+  + I   L
Sbjct: 359 KSRQAIELFRVMIGRRL 375


>ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
           gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
           gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis
           thaliana] gi|7270720|emb|CAB80403.1| putative protein
           [Arabidopsis thaliana] gi|332661386|gb|AEE86786.1|
           Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  167 bits (422), Expect(2) = 2e-57
 Identities = 77/146 (52%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
 Frame = +2

Query: 20  RDFVAWNAMISGFAVNGLSKEALQVFNDMLQLS-VPPTEITFIHILSVCAHAGLIHEGWK 196
           +D VAWNAMI+G+A++G S++AL++FN+M  ++ + PT+ITFI  L  CAHAGL++EG +
Sbjct: 323 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 382

Query: 197 IFHLMIDEYGIEPKIEHYGCMVNLLGRAGQLNEAFELVRAMNIHPDHIIWRTLIGGCELH 376
           IF  M  EYGI+PKIEHYGC+V+LLGRAGQL  A+E ++ MN+  D ++W +++G C+LH
Sbjct: 383 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 442

Query: 377 GNSGLGEEIVDLHINWNLASSGACVL 454
           G+  LG+EI +  I  N+ +SG  VL
Sbjct: 443 GDFVLGKEIAEYLIGLNIKNSGIYVL 468



 Score = 82.4 bits (202), Expect(2) = 2e-57
 Identities = 38/71 (53%), Positives = 51/71 (71%)
 Frame = +1

Query: 454 SNMYAVAGNWNGVARVRTKMKDTGIQKEPGCSSIEVNNTVHEFLAGDTSHPRRKEIYMML 633
           SN+YA  G++ GVA+VR  MK+ GI KEPG S+IE+ N VHEF AGD  H + KEIY ML
Sbjct: 470 SNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTML 529

Query: 634 EEINRCLEDYG 666
            +I+  ++ +G
Sbjct: 530 RKISERIKSHG 540



 Score = 68.6 bits (166), Expect = 2e-09
 Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
 Frame = +2

Query: 17  ERDFVAWNAMISGFAVNGLSKEALQVFNDMLQLSVP-PTEITFIHILSVCAHAGLIHEGW 193
           ERD V+WN MI G+A +G   +AL +F  +L    P P EIT +  LS C+  G +  G 
Sbjct: 220 ERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETG- 278

Query: 194 KIFHLMIDEYGIEPKIEHYGCMVNLLGRAGQLNEAFELVRAMNIHPDHIIWRTLIGGCEL 373
           +  H+ +    I   ++    ++++  + G L EA  LV       D + W  +I G  +
Sbjct: 279 RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAV-LVFNDTPRKDIVAWNAMIAGYAM 337

Query: 374 HGNS 385
           HG S
Sbjct: 338 HGYS 341