BLASTX nr result
ID: Bupleurum21_contig00024564
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00024564
(574 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22748.3| unnamed protein product [Vitis vinifera] 173 3e-50
ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containi... 173 3e-50
ref|NP_191564.1| pentatricopeptide repeat-containing protein [Ar... 172 1e-47
emb|CAC36392.1| hypothetical protein [Capsella rubella] 167 1e-47
ref|XP_002321918.1| predicted protein [Populus trichocarpa] gi|2... 165 2e-47
>emb|CBI22748.3| unnamed protein product [Vitis vinifera]
Length = 518
Score = 173 bits (439), Expect(2) = 3e-50
Identities = 81/108 (75%), Positives = 96/108 (88%)
Frame = +2
Query: 2 TTLIDGLSRAGNLEACKYFFNEMKRYGCMPDVVCYTVMITGVIVAGDLDSAEELYREMIN 181
TTLIDGLSRAGNL+ACKYFF+EM + GCMPDVVCYTVMITG IVAG+L+ A+ L+ EM
Sbjct: 372 TTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTV 431
Query: 182 NGQIPNVFTYNSIIRGLCMAGRFKDAFHMLEEMETRGCSPNFLVYNTL 325
GQ+PNVFTYNS+IRGLCMA +F++A ML+EME+RGC+PNFLVYNTL
Sbjct: 432 KGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTL 479
Score = 50.8 bits (120), Expect(2) = 3e-50
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 331 LRNAGKLSEAHKVIRIMVEKGKYSHLISKFNHRR 432
LRNAGKL EAH+VIR MV+KG+Y HL+SKF R
Sbjct: 483 LRNAGKLKEAHEVIRHMVDKGQYVHLLSKFKGYR 516
Score = 64.3 bits (155), Expect = 1e-08
Identities = 33/88 (37%), Positives = 50/88 (56%)
Frame = +2
Query: 62 NEMKRYGCMPDVVCYTVMITGVIVAGDLDSAEELYREMINNGQIPNVFTYNSIIRGLCMA 241
N MK G P V+ +T +I G+ AG+LD+ + + EMI G +P+V Y +I G +A
Sbjct: 357 NHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVA 416
Query: 242 GRFKDAFHMLEEMETRGCSPNFLVYNTL 325
G + A + EEM +G PN YN++
Sbjct: 417 GELEMAQGLFEEMTVKGQLPNVFTYNSM 444
>ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g55630-like [Vitis vinifera]
Length = 514
Score = 173 bits (439), Expect(2) = 3e-50
Identities = 81/108 (75%), Positives = 96/108 (88%)
Frame = +2
Query: 2 TTLIDGLSRAGNLEACKYFFNEMKRYGCMPDVVCYTVMITGVIVAGDLDSAEELYREMIN 181
TTLIDGLSRAGNL+ACKYFF+EM + GCMPDVVCYTVMITG IVAG+L+ A+ L+ EM
Sbjct: 368 TTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTV 427
Query: 182 NGQIPNVFTYNSIIRGLCMAGRFKDAFHMLEEMETRGCSPNFLVYNTL 325
GQ+PNVFTYNS+IRGLCMA +F++A ML+EME+RGC+PNFLVYNTL
Sbjct: 428 KGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTL 475
Score = 50.8 bits (120), Expect(2) = 3e-50
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = +1
Query: 331 LRNAGKLSEAHKVIRIMVEKGKYSHLISKFNHRR 432
LRNAGKL EAH+VIR MV+KG+Y HL+SKF R
Sbjct: 479 LRNAGKLKEAHEVIRHMVDKGQYVHLLSKFKGYR 512
Score = 64.3 bits (155), Expect = 1e-08
Identities = 33/88 (37%), Positives = 50/88 (56%)
Frame = +2
Query: 62 NEMKRYGCMPDVVCYTVMITGVIVAGDLDSAEELYREMINNGQIPNVFTYNSIIRGLCMA 241
N MK G P V+ +T +I G+ AG+LD+ + + EMI G +P+V Y +I G +A
Sbjct: 353 NHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVA 412
Query: 242 GRFKDAFHMLEEMETRGCSPNFLVYNTL 325
G + A + EEM +G PN YN++
Sbjct: 413 GELEMAQGLFEEMTVKGQLPNVFTYNSM 440
>ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g60050 gi|7076758|emb|CAB75920.1| putative protein
[Arabidopsis thaliana] gi|332646485|gb|AEE80006.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 473
Score = 172 bits (436), Expect(2) = 1e-47
Identities = 78/108 (72%), Positives = 96/108 (88%)
Frame = +2
Query: 2 TTLIDGLSRAGNLEACKYFFNEMKRYGCMPDVVCYTVMITGVIVAGDLDSAEELYREMIN 181
TTLIDGLSRAGNLEACKYF +EM + GC PDVVCYTVMITG +V+G+LD A+E++REM
Sbjct: 328 TTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTV 387
Query: 182 NGQIPNVFTYNSIIRGLCMAGRFKDAFHMLEEMETRGCSPNFLVYNTL 325
GQ+PNVFTYNS+IRGLCMAG F++A +L+EME+RGC+PNF+VY+TL
Sbjct: 388 KGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTL 435
Score = 43.1 bits (100), Expect(2) = 1e-47
Identities = 21/29 (72%), Positives = 23/29 (79%)
Frame = +1
Query: 331 LRNAGKLSEAHKVIRIMVEKGKYSHLISK 417
LR AGKLSEA KVIR MV+KG Y HL+ K
Sbjct: 439 LRKAGKLSEARKVIREMVKKGHYVHLVPK 467
Score = 60.5 bits (145), Expect = 2e-07
Identities = 31/88 (35%), Positives = 46/88 (52%)
Frame = +2
Query: 62 NEMKRYGCMPDVVCYTVMITGVIVAGDLDSAEELYREMINNGQIPNVFTYNSIIRGLCMA 241
N MK G P V+ YT +I G+ AG+L++ + EM+ G P+V Y +I G ++
Sbjct: 313 NHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVS 372
Query: 242 GRFKDAFHMLEEMETRGCSPNFLVYNTL 325
G A M EM +G PN YN++
Sbjct: 373 GELDKAKEMFREMTVKGQLPNVFTYNSM 400
>emb|CAC36392.1| hypothetical protein [Capsella rubella]
Length = 150
Score = 167 bits (423), Expect(2) = 1e-47
Identities = 74/108 (68%), Positives = 93/108 (86%)
Frame = +2
Query: 2 TTLIDGLSRAGNLEACKYFFNEMKRYGCMPDVVCYTVMITGVIVAGDLDSAEELYREMIN 181
TTL+DGLSRAG LEAC+YF +EM + GC PDVVCYTVMITG I G+L+ AEE+++EM
Sbjct: 4 TTLVDGLSRAGKLEACQYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTE 63
Query: 182 NGQIPNVFTYNSIIRGLCMAGRFKDAFHMLEEMETRGCSPNFLVYNTL 325
GQ+PNVFTYNS+IRG CMAG+FK+A +L+EME+RGC+PNF+VY+TL
Sbjct: 64 KGQLPNVFTYNSLIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTL 111
Score = 48.1 bits (113), Expect(2) = 1e-47
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = +1
Query: 331 LRNAGKLSEAHKVIRIMVEKGKYSHLISKFNHRR 432
LRNAGKL EAH+V++ MVEKG Y+HL+SK R
Sbjct: 115 LRNAGKLLEAHEVVKDMVEKGHYAHLLSKLKKYR 148
>ref|XP_002321918.1| predicted protein [Populus trichocarpa] gi|222868914|gb|EEF06045.1|
predicted protein [Populus trichocarpa]
Length = 159
Score = 165 bits (418), Expect(2) = 2e-47
Identities = 75/108 (69%), Positives = 94/108 (87%)
Frame = +2
Query: 2 TTLIDGLSRAGNLEACKYFFNEMKRYGCMPDVVCYTVMITGVIVAGDLDSAEELYREMIN 181
TTLIDGL RAGNL C+YFF+EM + GC+PDVVCYTVMITG I+ G+L+ A+E++ +MI
Sbjct: 14 TTLIDGLGRAGNLLGCQYFFDEMIKAGCIPDVVCYTVMITGYIMNGELEKAQEMFEDMIV 73
Query: 182 NGQIPNVFTYNSIIRGLCMAGRFKDAFHMLEEMETRGCSPNFLVYNTL 325
NGQ+PNVFTYNS+IRGLCMAG+F++A ML+EME+RGC+PNF VY TL
Sbjct: 74 NGQLPNVFTYNSMIRGLCMAGKFEEACSMLKEMESRGCNPNFHVYRTL 121
Score = 49.7 bits (117), Expect(2) = 2e-47
Identities = 22/32 (68%), Positives = 29/32 (90%)
Frame = +1
Query: 322 LRCLRNAGKLSEAHKVIRIMVEKGKYSHLISK 417
+R LRNAGKLSEAH+VI+ M+EK +YSHL++K
Sbjct: 122 VRNLRNAGKLSEAHEVIKQMIEKSQYSHLVTK 153