BLASTX nr result

ID: Bupleurum21_contig00024548 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00024548
         (620 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265190.1| PREDICTED: AP-1 complex subunit gamma-2 [Vit...   344   8e-93
ref|XP_002521026.1| AP-1 complex subunit gamma-2, putative [Rici...   341   7e-92
ref|XP_002309097.1| predicted protein [Populus trichocarpa] gi|2...   337   8e-91
gb|AEL98819.1| AP-1 complex subunit gamma-1, partial [Silene lat...   335   5e-90
gb|AAD14483.1| Strong similarity to gb|AF061286 gamma-adaptin 1 ...   333   2e-89

>ref|XP_002265190.1| PREDICTED: AP-1 complex subunit gamma-2 [Vitis vinifera]
           gi|296086533|emb|CBI32122.3| unnamed protein product
           [Vitis vinifera]
          Length = 878

 Score =  344 bits (882), Expect = 8e-93
 Identities = 174/206 (84%), Positives = 187/206 (90%)
 Frame = -2

Query: 619 CTDGLVKILKDVVNSPYAPEYDIAGIADPFXXXXXXXXXXXXXXGDADASDCMNDILAQV 440
           CT+ LVK+LKDVVNSPYAPEYDIAGI DPF              GDADASDCMNDILAQV
Sbjct: 219 CTEVLVKVLKDVVNSPYAPEYDIAGITDPFLHIRLLRLLRVLGQGDADASDCMNDILAQV 278

Query: 439 ATKTESNKNAGNAVLYECVDTIMSIEDNSGLRVLAINILGRFLSNRDNNIRYVALNMLMR 260
           ATKTESNKNAGNA+LYECV+TIMSIED SGLRVLAINILGRFLSNRDNNIRYVALNMLM+
Sbjct: 279 ATKTESNKNAGNAILYECVETIMSIEDTSGLRVLAINILGRFLSNRDNNIRYVALNMLMK 338

Query: 259 AITVDSQAVQRHRATILECVKDSDASIRKKALELIYLLVNENNVMSLSKELINYLEVSDP 80
           AITVD+QAVQRHRATILECVKDSDASIRK+ALELIY+LVN++NV  L+KELI+YLEVSDP
Sbjct: 339 AITVDAQAVQRHRATILECVKDSDASIRKRALELIYVLVNDSNVKPLAKELIDYLEVSDP 398

Query: 79  EFKGDLTAKICSLVEKFSPEKIWYID 2
           EFKGDLTAKICS+VEKFSPEKIWYID
Sbjct: 399 EFKGDLTAKICSIVEKFSPEKIWYID 424


>ref|XP_002521026.1| AP-1 complex subunit gamma-2, putative [Ricinus communis]
           gi|223539863|gb|EEF41443.1| AP-1 complex subunit
           gamma-2, putative [Ricinus communis]
          Length = 875

 Score =  341 bits (874), Expect = 7e-92
 Identities = 173/206 (83%), Positives = 184/206 (89%)
 Frame = -2

Query: 619 CTDGLVKILKDVVNSPYAPEYDIAGIADPFXXXXXXXXXXXXXXGDADASDCMNDILAQV 440
           CTDGLV+ L+DVVNSPYAPEYDIAGI DPF              GDADASD MNDILAQV
Sbjct: 219 CTDGLVRTLRDVVNSPYAPEYDIAGITDPFLHIRLLRLLRMLGQGDADASDAMNDILAQV 278

Query: 439 ATKTESNKNAGNAVLYECVDTIMSIEDNSGLRVLAINILGRFLSNRDNNIRYVALNMLMR 260
           ATKTESNKNAGNA+LYECV+TIMSIEDN GLRVLAINILGRFLSNRDNNIRYVALNMLM+
Sbjct: 279 ATKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMK 338

Query: 259 AITVDSQAVQRHRATILECVKDSDASIRKKALELIYLLVNENNVMSLSKELINYLEVSDP 80
           AITVD+QAVQRHRATILECVKDSDASIRK+ALEL+YLLVNE+NV  L+KELI YLEVSD 
Sbjct: 339 AITVDAQAVQRHRATILECVKDSDASIRKRALELVYLLVNESNVKPLTKELIEYLEVSDQ 398

Query: 79  EFKGDLTAKICSLVEKFSPEKIWYID 2
           EFKGDLTAKICS+VEKFSPEKIWYID
Sbjct: 399 EFKGDLTAKICSIVEKFSPEKIWYID 424


>ref|XP_002309097.1| predicted protein [Populus trichocarpa] gi|222855073|gb|EEE92620.1|
           predicted protein [Populus trichocarpa]
          Length = 877

 Score =  337 bits (865), Expect = 8e-91
 Identities = 172/205 (83%), Positives = 184/205 (89%)
 Frame = -2

Query: 616 TDGLVKILKDVVNSPYAPEYDIAGIADPFXXXXXXXXXXXXXXGDADASDCMNDILAQVA 437
           T+GLV+ LKDVVNSPYAPEYDIAGIADPF              GDADASD MNDILAQVA
Sbjct: 220 TEGLVRTLKDVVNSPYAPEYDIAGIADPFLHVRLLKLLRALGQGDADASDAMNDILAQVA 279

Query: 436 TKTESNKNAGNAVLYECVDTIMSIEDNSGLRVLAINILGRFLSNRDNNIRYVALNMLMRA 257
           TKTESNKNAGNA+LYECV+TIMSIEDN GLRVLAINILGRFLSNRDNNIRYVALNMLM+A
Sbjct: 280 TKTESNKNAGNAILYECVETIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMKA 339

Query: 256 ITVDSQAVQRHRATILECVKDSDASIRKKALELIYLLVNENNVMSLSKELINYLEVSDPE 77
           ITVD+QAVQRHRATILECVKDSDASIRK+ALEL+Y+LVNE NV  L+KELI+YLEVSD E
Sbjct: 340 ITVDAQAVQRHRATILECVKDSDASIRKRALELVYVLVNETNVKPLTKELIDYLEVSDEE 399

Query: 76  FKGDLTAKICSLVEKFSPEKIWYID 2
           FKGDLTAKICS+VEKFSPEKIWYID
Sbjct: 400 FKGDLTAKICSIVEKFSPEKIWYID 424


>gb|AEL98819.1| AP-1 complex subunit gamma-1, partial [Silene latifolia]
          Length = 878

 Score =  335 bits (858), Expect = 5e-90
 Identities = 168/206 (81%), Positives = 181/206 (87%)
 Frame = -2

Query: 619 CTDGLVKILKDVVNSPYAPEYDIAGIADPFXXXXXXXXXXXXXXGDADASDCMNDILAQV 440
           CTD +V++LKD+VNS YAPEYD+AGI DPF              GDADASDCMNDILAQV
Sbjct: 219 CTDAVVRVLKDLVNSSYAPEYDVAGITDPFLHIRLLRFLRVLGHGDADASDCMNDILAQV 278

Query: 439 ATKTESNKNAGNAVLYECVDTIMSIEDNSGLRVLAINILGRFLSNRDNNIRYVALNMLMR 260
           ATKTESNKNAGNA+LYECVDTIMSIEDNSGLRVLAINILGRFLSN+DNNIRYVALNMLMR
Sbjct: 279 ATKTESNKNAGNAILYECVDTIMSIEDNSGLRVLAINILGRFLSNKDNNIRYVALNMLMR 338

Query: 259 AITVDSQAVQRHRATILECVKDSDASIRKKALELIYLLVNENNVMSLSKELINYLEVSDP 80
           AI VDSQAVQRHR TILECVKDSDASIRK+ALEL+YLLVNE+NV  L+KELI YLE SD 
Sbjct: 339 AINVDSQAVQRHRTTILECVKDSDASIRKRALELVYLLVNESNVKPLTKELIEYLEASDH 398

Query: 79  EFKGDLTAKICSLVEKFSPEKIWYID 2
           EFKGDL+ KICS+VEKFSPEKIWYID
Sbjct: 399 EFKGDLSTKICSIVEKFSPEKIWYID 424


>gb|AAD14483.1| Strong similarity to gb|AF061286 gamma-adaptin 1 from Arabidopsis
           thaliana. EST gb|H37393 comes from this gene
           [Arabidopsis thaliana]
          Length = 867

 Score =  333 bits (853), Expect = 2e-89
 Identities = 165/206 (80%), Positives = 183/206 (88%)
 Frame = -2

Query: 619 CTDGLVKILKDVVNSPYAPEYDIAGIADPFXXXXXXXXXXXXXXGDADASDCMNDILAQV 440
           CT+GLVK L+D+ NSPY+PEYD+AGI DPF              GDADASDCMNDILAQV
Sbjct: 219 CTEGLVKTLRDIANSPYSPEYDVAGITDPFLHIRLLKLLRVLGQGDADASDCMNDILAQV 278

Query: 439 ATKTESNKNAGNAVLYECVDTIMSIEDNSGLRVLAINILGRFLSNRDNNIRYVALNMLMR 260
           A+KTESNKNAGNA+LYECV TIMSIE+N GLRVLAINILG+FLSNRDNNIRYVALNMLMR
Sbjct: 279 ASKTESNKNAGNAILYECVQTIMSIEENGGLRVLAINILGKFLSNRDNNIRYVALNMLMR 338

Query: 259 AITVDSQAVQRHRATILECVKDSDASIRKKALELIYLLVNENNVMSLSKELINYLEVSDP 80
           ++TVDSQAVQRHRATILECVKDSDASI+K+ALELIYLLVNENNV  L+KELI YLEVS+ 
Sbjct: 339 SLTVDSQAVQRHRATILECVKDSDASIQKRALELIYLLVNENNVKPLAKELIEYLEVSEQ 398

Query: 79  EFKGDLTAKICSLVEKFSPEKIWYID 2
           +FKGDLTAKICS+VEKF+PEKIWYID
Sbjct: 399 DFKGDLTAKICSIVEKFAPEKIWYID 424


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