BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00024501
         (842 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517667.1| pentatricopeptide repeat-containing protein,...   441   e-122
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi...   426   e-117
ref|XP_002310520.1| predicted protein [Populus trichocarpa] gi|2...   424   e-117
ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containi...   419   e-115
ref|XP_003602631.1| Pentatricopeptide repeat-containing protein ...   416   e-114

>ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223543299|gb|EEF44831.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 628

 Score =  441 bits (1135), Expect = e-122
 Identities = 207/280 (73%), Positives = 245/280 (87%)
 Frame = +1

Query: 1    DMYSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEV 180
            D+YSKCGFVDC+++VFDGM ERNVVSWNSLITCY+QNGP+ EAL I ++MM  G +PDEV
Sbjct: 194  DIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEV 253

Query: 181  TLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQIFDN 360
            TLASVVSACA L+  K+G +IHA ++K DKLR DL++ NALVDMYAKC +I EAR +FD 
Sbjct: 254  TLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDR 313

Query: 361  MPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEALELY 540
            MPI+NVVSETSMVSGYAK ASV+ AR +FTKMIE+NVVSWNALIAGYTQNG+N EAL L+
Sbjct: 314  MPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLF 373

Query: 541  CLLKRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSGPECNIFVGNSLI 720
             +LKRE++CPTHYTFGNLLNACANL+DL++GRQAH HV+KHG RFQ G E ++FVGN+LI
Sbjct: 374  RMLKREAICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALI 433

Query: 721  DMYMKCGSVEEGIQVFNNMKERDRVSWNALIVGYTQNGHG 840
            DMYMKCGSVEEG ++F NM ERD VSWNA+IVGY QNG+G
Sbjct: 434  DMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNGYG 473



 Score =  156 bits (394), Expect = 6e-36
 Identities = 87/221 (39%), Positives = 129/221 (58%)
 Frame = +1

Query: 172 DEVTLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQI 351
           D    A ++ +C     +++ ++IHA+IIK  +   ++ I N L+D Y KC    +AR+I
Sbjct: 18  DSSPFAKLLDSCLKSKSLRDTRRIHARIIKT-QFAYEVFIQNRLIDAYGKCGCFDDARKI 76

Query: 352 FDNMPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEAL 531
           FD MP KNV S  ++VS   K   +     +F  M E +  SWN+LIAG+ Q+    EAL
Sbjct: 77  FDQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEAL 136

Query: 532 ELYCLLKRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSGPECNIFVGN 711
             +  + R+      YTFG+ L+ACA L DLK+G Q       HGL  +S    ++++G+
Sbjct: 137 NYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQI------HGLMLKSQFLLDVYMGS 190

Query: 712 SLIDMYMKCGSVEEGIQVFNNMKERDRVSWNALIVGYTQNG 834
           +LID+Y KCG V+   +VF+ M ER+ VSWN+LI  Y QNG
Sbjct: 191 ALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNG 231



 Score =  156 bits (394), Expect = 6e-36
 Identities = 111/340 (32%), Positives = 154/340 (45%), Gaps = 62/340 (18%)
 Frame = +1

Query: 1   DMYSKCGFVDCSRKVFDGMPERNVVSWN-------------------------------S 87
           D Y KCG  D +RK+FD MPE+NV SWN                               S
Sbjct: 62  DAYGKCGCFDDARKIFDQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNS 121

Query: 88  LITCYDQNGPATEALNILVKMMNCGVKPDEVTLASVVSACACLSLIKEGKQIHAQIIKCD 267
           LI  + Q+    EALN  VKM   G   +E T  S +SACA L  +K G QIH  ++K  
Sbjct: 122 LIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQ 181

Query: 268 KLRSDLVICNALVDMYAKCSKITEARQIFDNMPIKNVVSETSMVSGYAKIASVRTARSMF 447
            L  D+ + +AL+D+Y+KC  +  A+++                               F
Sbjct: 182 FLL-DVYMGSALIDIYSKCGFVDCAQRV-------------------------------F 209

Query: 448 TKMIEKNVVSWNALIAGYTQNGDNVEALELYCLLKRESVCPTHYTFGNLLNACANLSDLK 627
             M+E+NVVSWN+LI  Y QNG + EALE++  +      P   T  ++++ACA+L+  K
Sbjct: 210 DGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAK 269

Query: 628 VGRQAHTHVVKHGLRFQSGPECNIFVGNSLIDMYMKCGSVEEGIQVFNNMK--------- 780
            G + H  VVK     +     ++ + N+L+DMY KCG + E   VF+ M          
Sbjct: 270 QGLEIHACVVK-----RDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETS 324

Query: 781 ----------------------ERDRVSWNALIVGYTQNG 834
                                 ER+ VSWNALI GYTQNG
Sbjct: 325 MVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNG 364



 Score =  107 bits (267), Expect = 3e-21
 Identities = 70/216 (32%), Positives = 105/216 (48%), Gaps = 5/216 (2%)
 Frame = +1

Query: 7   YSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEVTL 186
           Y+K   V  +R +F  M ERNVVSWN+LI  Y QNG   EAL +   +    + P   T 
Sbjct: 329 YAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTF 388

Query: 187 ASVVSACACLSLIKEGKQIHAQIIKCDKL-----RSDLVICNALVDMYAKCSKITEARQI 351
            ++++ACA L+ ++ G+Q HA ++K          SD+ + NAL+DMY KC  + E  +I
Sbjct: 389 GNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRI 448

Query: 352 FDNMPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEAL 531
           F+NM  ++ VS  +M+ GYA                               QNG  +EAL
Sbjct: 449 FENMVERDYVSWNAMIVGYA-------------------------------QNGYGMEAL 477

Query: 532 ELYCLLKRESVCPTHYTFGNLLNACANLSDLKVGRQ 639
            L+  +      P H T    L AC++   ++ GR+
Sbjct: 478 GLFRKMLASGEKPDHVTMIGALCACSHAGLVQEGRK 513



 Score = 78.6 bits (192), Expect = 2e-12
 Identities = 36/80 (45%), Positives = 52/80 (65%)
 Frame = +1

Query: 1   DMYSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEV 180
           DMY KCG V+   ++F+ M ER+ VSWN++I  Y QNG   EAL +  KM+  G KPD V
Sbjct: 434 DMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDHV 493

Query: 181 TLASVVSACACLSLIKEGKQ 240
           T+   + AC+   L++EG++
Sbjct: 494 TMIGALCACSHAGLVQEGRK 513


>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
            [Vitis vinifera]
          Length = 684

 Score =  426 bits (1095), Expect = e-117
 Identities = 203/280 (72%), Positives = 242/280 (86%)
 Frame = +1

Query: 1    DMYSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEV 180
            DMYSKCG V C+ +VF GM ERN+V+WNSLITCY+QNGPA+EAL + V+MM+ G++PDEV
Sbjct: 190  DMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEV 249

Query: 181  TLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQIFDN 360
            TLASVVSACA L  +KEG QIHA+++K +K R DLV+ NALVDMYAKCSK+ EAR++FD 
Sbjct: 250  TLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDR 309

Query: 361  MPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEALELY 540
            M I+NVVSETSMVSGYA+ ASV+ AR MF+KM ++NVVSWNALIAGYTQNG+N EAL L+
Sbjct: 310  MSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLF 369

Query: 541  CLLKRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSGPECNIFVGNSLI 720
             LLKRES+ PTHYTFGNLL+ACANL+DL +GRQAHTHV+K G  FQSG E +IFVGNSLI
Sbjct: 370  RLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLI 429

Query: 721  DMYMKCGSVEEGIQVFNNMKERDRVSWNALIVGYTQNGHG 840
            DMYMKCGS+E+G +VF  MKERD VSWNA+IVGY QNG+G
Sbjct: 430  DMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYG 469



 Score =  156 bits (394), Expect = 6e-36
 Identities = 101/306 (33%), Positives = 152/306 (49%), Gaps = 31/306 (10%)
 Frame = +1

Query: 10  SKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEVTLA 189
           +K GF+D + ++F  MPE +  SWNS+++ + Q+    E+L   VKM       +E +  
Sbjct: 92  TKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFG 151

Query: 190 SVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQIFDNMPI 369
           S +SACA L  +  G Q+HA + K  +  +D+ + +AL+DMY+KC               
Sbjct: 152 SALSACAGLMDLNMGTQVHALVSK-SRYSTDVYMGSALIDMYSKCG-------------- 196

Query: 370 KNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEALELYCLL 549
                            SV  A  +F+ MIE+N+V+WN+LI  Y QNG   EALE++  +
Sbjct: 197 -----------------SVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRM 239

Query: 550 KRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSGPECNIFVGNSLIDMY 729
               + P   T  ++++ACA+L  LK G Q H  VVK   +F+     ++ +GN+L+DMY
Sbjct: 240 MDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTN-KFRD----DLVLGNALVDMY 294

Query: 730 MKCGSVEEGIQVFNNMK-------------------------------ERDRVSWNALIV 816
            KC  V E  +VF+ M                                +R+ VSWNALI 
Sbjct: 295 AKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIA 354

Query: 817 GYTQNG 834
           GYTQNG
Sbjct: 355 GYTQNG 360



 Score =  146 bits (368), Expect = 6e-33
 Identities = 78/222 (35%), Positives = 127/222 (57%)
 Frame = +1

Query: 169 PDEVTLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQ 348
           P+    A ++ +C      +  + +HA+I+   +   ++ I N L+D+Y KC  + +AR+
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMT-QFSMEIFIQNRLIDVYGKCDCLDDARK 71

Query: 349 IFDNMPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEA 528
           +FD MP +N  +  S++S   K   +  A  +F  M E +  SWN++++G+ Q+    E+
Sbjct: 72  LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131

Query: 529 LELYCLLKRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSGPECNIFVG 708
           LE +  + RE      Y+FG+ L+ACA L DL +G Q H  V K      S    ++++G
Sbjct: 132 LEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSK------SRYSTDVYMG 185

Query: 709 NSLIDMYMKCGSVEEGIQVFNNMKERDRVSWNALIVGYTQNG 834
           ++LIDMY KCGSV    +VF+ M ER+ V+WN+LI  Y QNG
Sbjct: 186 SALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNG 227



 Score =  107 bits (268), Expect = 3e-21
 Identities = 78/287 (27%), Positives = 131/287 (45%), Gaps = 10/287 (3%)
 Frame = +1

Query: 7    YSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEVTL 186
            Y++   V  +R +F  M +RNVVSWN+LI  Y QNG   EAL +   +    + P   T 
Sbjct: 325  YARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTF 384

Query: 187  ASVVSACACLSLIKEGKQIHAQIIKC-----DKLRSDLVICNALVDMYAKCSKITEARQI 351
             +++SACA L+ +  G+Q H  ++K          SD+ + N+L+DMY KC  I +  ++
Sbjct: 385  GNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRV 444

Query: 352  FDNMPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEAL 531
            F+ M  ++ VS  +++ GYA                               QNG   EAL
Sbjct: 445  FEKMKERDCVSWNAIIVGYA-------------------------------QNGYGAEAL 473

Query: 532  ELYCLLKRESVC---PTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGL-RFQSGPECNI 699
            +++   ++  VC   P H T   +L AC++   ++ GR     + +HGL   +    C  
Sbjct: 474  QIF---RKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTC-- 528

Query: 700  FVGNSLIDMYMKCGSVEEGIQVFNNMK-ERDRVSWNALIVGYTQNGH 837
                 ++D+  + G + E   +   M    D V W +L+     +G+
Sbjct: 529  -----MVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGN 570



 Score = 92.8 bits (229), Expect = 8e-17
 Identities = 53/164 (32%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
 Frame = +1

Query: 1   DMYSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEV 180
           DMY KCG ++   +VF+ M ER+ VSWN++I  Y QNG   EAL I  KM+ CG KPD V
Sbjct: 430 DMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHV 489

Query: 181 TLASVVSACACLSLIKEGKQIHAQIIKCDKL-RSDLVICNALVDMYAKCSKITEARQIFD 357
           T+  V+ AC+   L++EG+     + +   +   D   C  +VD+  +   + EA+ + +
Sbjct: 490 TMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTC--MVDLLGRAGCLNEAKNLIE 547

Query: 358 NMPIK-NVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNA 486
            MP+  + V   S+++      ++   +    K++E  +  WN+
Sbjct: 548 AMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLE--IDPWNS 589


>ref|XP_002310520.1| predicted protein [Populus trichocarpa] gi|222853423|gb|EEE90970.1|
            predicted protein [Populus trichocarpa]
          Length = 710

 Score =  424 bits (1091), Expect = e-117
 Identities = 200/280 (71%), Positives = 237/280 (84%)
 Frame = +1

Query: 1    DMYSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEV 180
            D YSKCG V C+R+VFDGM E+NVVSWN LITCY+QNGPA EAL    +M   G KPDEV
Sbjct: 199  DFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEV 258

Query: 181  TLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQIFDN 360
            TLASVVSACA L+  KEG QIHA+++K DK R+DL++ NALVDMYAKC ++ EAR +FD 
Sbjct: 259  TLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDR 318

Query: 361  MPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEALELY 540
            MP++N VSET+MVSGYAK ASV+ ARSMF  + +K++VSWNALIAGYTQNG+N EAL L+
Sbjct: 319  MPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLF 378

Query: 541  CLLKRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSGPECNIFVGNSLI 720
             +LKRESVCPTHYTFGNLLNA ANL+DL++GRQAH+HVVKHG RFQSG E +IFVGNSLI
Sbjct: 379  RMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLI 438

Query: 721  DMYMKCGSVEEGIQVFNNMKERDRVSWNALIVGYTQNGHG 840
            DMYMKCGSVEEG++VF NM E+D VSWN +I+GY QNG+G
Sbjct: 439  DMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYG 478



 Score =  153 bits (387), Expect = 4e-35
 Identities = 112/340 (32%), Positives = 152/340 (44%), Gaps = 62/340 (18%)
 Frame = +1

Query: 1   DMYSKCGFVDCSRKVFDGMPERNVVS-------------------------------WNS 87
           D+Y KCG++D +RKVFD M ERNV S                               WNS
Sbjct: 67  DVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNS 126

Query: 88  LITCYDQNGPATEALNILVKMMNCGVKPDEVTLASVVSACACLSLIKEGKQIHAQIIKCD 267
           +I  + Q+    EAL+  V+M       ++ +  S +SAC+ L  +K G QIH  I K  
Sbjct: 127 MIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISK-S 185

Query: 268 KLRSDLVICNALVDMYAKCSKITEARQIFDNMPIKNVVSETSMVSGYAKIASVRTARSMF 447
           K   D+ + + L+D Y+KC                                 V  AR +F
Sbjct: 186 KYSLDVFMGSGLIDFYSKCGL-------------------------------VGCARRVF 214

Query: 448 TKMIEKNVVSWNALIAGYTQNGDNVEALELYCLLKRESVCPTHYTFGNLLNACANLSDLK 627
             M EKNVVSWN LI  Y QNG  +EALE +  +      P   T  ++++ACA L+  K
Sbjct: 215 DGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFK 274

Query: 628 VGRQAHTHVVKHGLRFQSGPECNIFVGNSLIDMYMKCGSVEEGIQVFNNM---------- 777
            G Q H  VVK   +F++    ++ +GN+L+DMY KCG V E   VF+ M          
Sbjct: 275 EGVQIHARVVKSD-KFRN----DLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETT 329

Query: 778 ---------------------KERDRVSWNALIVGYTQNG 834
                                K++D VSWNALI GYTQNG
Sbjct: 330 MVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNG 369



 Score =  143 bits (360), Expect = 5e-32
 Identities = 79/221 (35%), Positives = 126/221 (57%)
 Frame = +1

Query: 172 DEVTLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQI 351
           D    A ++  C  L   ++ + +H ++I+      ++ I N L+D+Y KC  +  AR++
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTP-FCEEVFIQNRLIDVYGKCGYLDYARKV 81

Query: 352 FDNMPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEAL 531
           FD M  +NV S  S++S   +   V  +  +F+ M EK+  SWN++IAG+ Q+    EAL
Sbjct: 82  FDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEAL 141

Query: 532 ELYCLLKRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSGPECNIFVGN 711
           + +  + R+      Y+FG+ L+AC+ L DLK+G Q       HGL  +S    ++F+G+
Sbjct: 142 DWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQI------HGLISKSKYSLDVFMGS 195

Query: 712 SLIDMYMKCGSVEEGIQVFNNMKERDRVSWNALIVGYTQNG 834
            LID Y KCG V    +VF+ M+E++ VSWN LI  Y QNG
Sbjct: 196 GLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNG 236



 Score =  112 bits (281), Expect = 8e-23
 Identities = 89/309 (28%), Positives = 142/309 (45%), Gaps = 38/309 (12%)
 Frame = +1

Query: 1    DMYSKCGFVDCSRKVFDGMPERN-------------------------------VVSWNS 87
            DMY+KCG V+ +R VFD MP RN                               +VSWN+
Sbjct: 301  DMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNA 360

Query: 88   LITCYDQNGPATEALNILVKMMNCGVKPDEVTLASVVSACACLSLIKEGKQIHAQIIKCD 267
            LI  Y QNG   EAL +   +    V P   T  ++++A A L+ ++ G+Q H+ ++K  
Sbjct: 361  LIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHG 420

Query: 268  -KLRS----DLVICNALVDMYAKCSKITEARQIFDNMPIKNVVSETSMVSGYAKIASVRT 432
             + +S    D+ + N+L+DMY KC  + E  ++F+NM  K+ VS  +M+ GYA       
Sbjct: 421  FRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYA------- 473

Query: 433  ARSMFTKMIEKNVVSWNALIAGYTQNGDNVEALELYCLLKRESVCPTHYTFGNLLNACAN 612
                                    QNG  +EALEL+  +      P H T    L AC++
Sbjct: 474  ------------------------QNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSH 509

Query: 613  LSDLKVGRQAHTHVVK-HGLRFQSGPECNIFVGNSLIDMYMKCGSVEEGIQVFNNM-KER 786
               ++ GR+    + K HGL     P  + +    ++D+  + G +EE   +  +M K+ 
Sbjct: 510  AGLVEEGRRYFFSMTKEHGLL----PVKDHY--TCMVDLLGRAGCLEEAKDLIESMPKQP 563

Query: 787  DRVSWNALI 813
            D V W++L+
Sbjct: 564  DAVVWSSLL 572



 Score = 89.4 bits (220), Expect = 9e-16
 Identities = 57/192 (29%), Positives = 101/192 (52%), Gaps = 4/192 (2%)
 Frame = +1

Query: 1    DMYSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEV 180
            DMY KCG V+   +VF+ M E++ VSWN++I  Y QNG   EAL +  KM+  G KPD V
Sbjct: 439  DMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHV 498

Query: 181  TLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQIFDN 360
            T+   + AC+   L++EG++    + K   L         +VD+  +   + EA+ + ++
Sbjct: 499  TMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIES 558

Query: 361  MPIK-NVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVS---WNALIAGYTQNGDNVEA 528
            MP + + V  +S++S      ++   + +  K+ E +  S   +  L   Y++ G   +A
Sbjct: 559  MPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDA 618

Query: 529  LELYCLLKRESV 564
            + +  L++R  V
Sbjct: 619  VSVRKLMRRRGV 630


>ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like
            [Glycine max]
          Length = 705

 Score =  419 bits (1078), Expect = e-115
 Identities = 200/280 (71%), Positives = 237/280 (84%)
 Frame = +1

Query: 1    DMYSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEV 180
            DMYSKCG V C+++ FDGM  RN+VSWNSLITCY+QNGPA +AL + V MM+ GV+PDE+
Sbjct: 194  DMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEI 253

Query: 181  TLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQIFDN 360
            TLASVVSACA  S I+EG QIHA+++K DK R+DLV+ NALVDMYAKC ++ EAR +FD 
Sbjct: 254  TLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDR 313

Query: 361  MPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEALELY 540
            MP++NVVSETSMV GYA+ ASV+ AR MF+ M+EKNVVSWNALIAGYTQNG+N EA+ L+
Sbjct: 314  MPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLF 373

Query: 541  CLLKRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSGPECNIFVGNSLI 720
             LLKRES+ PTHYTFGNLLNACANL+DLK+GRQAHT ++KHG  FQSG E +IFVGNSLI
Sbjct: 374  LLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLI 433

Query: 721  DMYMKCGSVEEGIQVFNNMKERDRVSWNALIVGYTQNGHG 840
            DMYMKCG VE+G  VF  M ERD VSWNA+IVGY QNG+G
Sbjct: 434  DMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYG 473



 Score =  145 bits (365), Expect = 1e-32
 Identities = 105/340 (30%), Positives = 154/340 (45%), Gaps = 62/340 (18%)
 Frame = +1

Query: 1   DMYSKCGFVDCSRKVFDGMPERNVVS-------------------------------WNS 87
           D Y KCG+ + +RKVFD MP+RN  S                               WN+
Sbjct: 62  DAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNA 121

Query: 88  LITCYDQNGPATEALNILVKMMNCGVKPDEVTLASVVSACACLSLIKEGKQIHAQIIKCD 267
           +++ + Q+    EAL   V M +     +E +  S +SACA L+ +  G QIHA I K  
Sbjct: 122 MVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSR 181

Query: 268 KLRSDLVICNALVDMYAKCSKITEARQIFDNMPIKNVVSETSMVSGYAKIASVRTARSMF 447
            L  D+ + +ALVDMY+KC  +                                 A+  F
Sbjct: 182 YLL-DVYMGSALVDMYSKCGVVA-------------------------------CAQRAF 209

Query: 448 TKMIEKNVVSWNALIAGYTQNGDNVEALELYCLLKRESVCPTHYTFGNLLNACANLSDLK 627
             M  +N+VSWN+LI  Y QNG   +ALE++ ++    V P   T  ++++ACA+ S ++
Sbjct: 210 DGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIR 269

Query: 628 VGRQAHTHVVKHGLRFQSGPECNIFVGNSLIDMYMKCGSVEEGIQV-------------- 765
            G Q H  VVK   ++++    ++ +GN+L+DMY KC  V E   V              
Sbjct: 270 EGLQIHARVVKRD-KYRN----DLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETS 324

Query: 766 -----------------FNNMKERDRVSWNALIVGYTQNG 834
                            F+NM E++ VSWNALI GYTQNG
Sbjct: 325 MVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNG 364



 Score =  142 bits (358), Expect = 9e-32
 Identities = 79/221 (35%), Positives = 124/221 (56%)
 Frame = +1

Query: 172 DEVTLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQI 351
           D    A ++ +C       + ++IHA+IIK  +  S++ I N LVD Y KC    +AR++
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKT-QFSSEIFIQNRLVDAYGKCGYFEDARKV 76

Query: 352 FDNMPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEAL 531
           FD MP +N  S  +++S   K   +  A ++F  M E +  SWNA+++G+ Q+    EAL
Sbjct: 77  FDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEAL 136

Query: 532 ELYCLLKRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSGPECNIFVGN 711
             +  +  E      Y+FG+ L+ACA L+DL +G Q H  + K      S    ++++G+
Sbjct: 137 RFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISK------SRYLLDVYMGS 190

Query: 712 SLIDMYMKCGSVEEGIQVFNNMKERDRVSWNALIVGYTQNG 834
           +L+DMY KCG V    + F+ M  R+ VSWN+LI  Y QNG
Sbjct: 191 ALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNG 231



 Score =  115 bits (287), Expect = 2e-23
 Identities = 79/285 (27%), Positives = 135/285 (47%), Gaps = 8/285 (2%)
 Frame = +1

Query: 7    YSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEVTL 186
            Y++   V  +R +F  M E+NVVSWN+LI  Y QNG   EA+ + + +    + P   T 
Sbjct: 329  YARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTF 388

Query: 187  ASVVSACACLSLIKEGKQIHAQIIKC-----DKLRSDLVICNALVDMYAKCSKITEARQI 351
             ++++ACA L+ +K G+Q H QI+K          SD+ + N+L+DMY KC  + +   +
Sbjct: 389  GNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLV 448

Query: 352  FDNMPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEAL 531
            F+ M  ++VVS  +M+ GYA                               QNG    AL
Sbjct: 449  FERMVERDVVSWNAMIVGYA-------------------------------QNGYGTNAL 477

Query: 532  ELYCLLKRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSG--PECNIFV 705
            E++  +      P H T   +L+AC++   ++ GR+       H +R + G  P  + F 
Sbjct: 478  EIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYF-----HSMRTELGLAPMKDHF- 531

Query: 706  GNSLIDMYMKCGSVEEGIQVFNNM-KERDRVSWNALIVGYTQNGH 837
               ++D+  + G ++E   +   M  + D V W +L+     +G+
Sbjct: 532  -TCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGN 575



 Score = 89.7 bits (221), Expect = 7e-16
 Identities = 52/135 (38%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
 Frame = +1

Query: 1   DMYSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEV 180
           DMY KCG V+    VF+ M ER+VVSWN++I  Y QNG  T AL I  KM+  G KPD V
Sbjct: 434 DMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHV 493

Query: 181 TLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVIC------NALVDMYAKCSKITEA 342
           T+  V+SAC+   L++EG++          +R++L +         +VD+  +   + EA
Sbjct: 494 TMIGVLSACSHAGLVEEGRRYF------HSMRTELGLAPMKDHFTCMVDLLGRAGCLDEA 547

Query: 343 RQIFDNMPIK--NVV 381
             +   MP++  NVV
Sbjct: 548 NDLIQTMPMQPDNVV 562


>ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355491679|gb|AES72882.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  416 bits (1070), Expect = e-114
 Identities = 196/280 (70%), Positives = 238/280 (85%)
 Frame = +1

Query: 1    DMYSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEV 180
            DMYSKC  V  +++ FD M  RN+VSWNSLITCY+QNGPA +AL + V+MMNCG++PDE+
Sbjct: 194  DMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEI 253

Query: 181  TLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQIFDN 360
            TLASV SACA LS I+EG QIHA+++K DK R+DLV+ NALVDMYAKC ++ EAR +FD 
Sbjct: 254  TLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDR 313

Query: 361  MPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEALELY 540
            MP+++VVSETSMVSGYAK +SV+ AR MF+ M+E+NVVSWNALIAGYTQNG+N EA+ L+
Sbjct: 314  MPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLF 373

Query: 541  CLLKRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSGPECNIFVGNSLI 720
             LLKRES+ PTHYTFGNLLNACANL+DLK+GRQAHTH++KHG  F+SG + +IFVGNSLI
Sbjct: 374  LLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLI 433

Query: 721  DMYMKCGSVEEGIQVFNNMKERDRVSWNALIVGYTQNGHG 840
            DMYMKCG VE+G  VF  M ERD VSWNA+IVGY QNG+G
Sbjct: 434  DMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYG 473



 Score =  147 bits (370), Expect = 4e-33
 Identities = 105/340 (30%), Positives = 155/340 (45%), Gaps = 62/340 (18%)
 Frame = +1

Query: 1   DMYSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNI-------------- 138
           D+Y KCGF++ +RKVFD M +RN  SWN+++    + G   EALN+              
Sbjct: 62  DVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNA 121

Query: 139 -----------------LVKMMNCGVKPDEVTLASVVSACACLSLIKEGKQIHAQIIKCD 267
                            +V M +     +E +  S +SACA L  +  G QIH  I K  
Sbjct: 122 MVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAK-S 180

Query: 268 KLRSDLVICNALVDMYAKCSKITEARQIFDNMPIKNVVSETSMVSGYAKIASVRTARSMF 447
           +   D+ + +ALVDMY+KC  +                                +A+  F
Sbjct: 181 RYSLDVYMGSALVDMYSKCRVVA-------------------------------SAQRAF 209

Query: 448 TKMIEKNVVSWNALIAGYTQNGDNVEALELYCLLKRESVCPTHYTFGNLLNACANLSDLK 627
             M  +N+VSWN+LI  Y QNG   +ALE++  +    + P   T  ++ +ACA+LS ++
Sbjct: 210 DDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIR 269

Query: 628 VGRQAHTHVVKHGLRFQSGPECNIFVGNSLIDMYMKCGSVEEGIQV-------------- 765
            G Q H  V+KH  ++++    ++ +GN+L+DMY KC  V E   V              
Sbjct: 270 EGLQIHARVMKHD-KYRN----DLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETS 324

Query: 766 -----------------FNNMKERDRVSWNALIVGYTQNG 834
                            F+NM ER+ VSWNALI GYTQNG
Sbjct: 325 MVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNG 364



 Score =  142 bits (358), Expect = 9e-32
 Identities = 77/221 (34%), Positives = 124/221 (56%)
 Frame = +1

Query: 172 DEVTLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQI 351
           D    A ++  C     + E + +HA+IIK  +  S++ I N LVD+Y KC  + +AR++
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKT-QFSSEIFIQNRLVDVYGKCGFLEDARKV 76

Query: 352 FDNMPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEAL 531
           FD+M  +N  S  +++    K  ++  A ++F  M E++  SWNA+++G+ Q     EAL
Sbjct: 77  FDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEAL 136

Query: 532 ELYCLLKRESVCPTHYTFGNLLNACANLSDLKVGRQAHTHVVKHGLRFQSGPECNIFVGN 711
                +  E      Y+FG+ L+ACA L DL +G Q       HGL  +S    ++++G+
Sbjct: 137 RFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQI------HGLIAKSRYSLDVYMGS 190

Query: 712 SLIDMYMKCGSVEEGIQVFNNMKERDRVSWNALIVGYTQNG 834
           +L+DMY KC  V    + F++M  R+ VSWN+LI  Y QNG
Sbjct: 191 ALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNG 231



 Score =  115 bits (288), Expect = 1e-23
 Identities = 81/284 (28%), Positives = 135/284 (47%), Gaps = 7/284 (2%)
 Frame = +1

Query: 7    YSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEVTL 186
            Y+K   V  +R +F  M ERNVVSWN+LI  Y QNG   EA+ + + +    + P   T 
Sbjct: 329  YAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTF 388

Query: 187  ASVVSACACLSLIKEGKQIHAQIIKC-----DKLRSDLVICNALVDMYAKCSKITEARQI 351
             ++++ACA L+ +K G+Q H  I+K          SD+ + N+L+DMY KC  + + R +
Sbjct: 389  GNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLV 448

Query: 352  FDNMPIKNVVSETSMVSGYAKIASVRTARSMFTKMIEKNVVSWNALIAGYTQNGDNVEAL 531
            F+ M  ++ VS  +M+ GYA                               QNG   EAL
Sbjct: 449  FERMLERDNVSWNAMIVGYA-------------------------------QNGYGTEAL 477

Query: 532  ELYCLLKRESVCPTHYTFGNLLNACANLSDLKVGR-QAHTHVVKHGLRFQSGPECNIFVG 708
            E++  +      P H T   +L+AC++   ++ GR    +  ++HGL     P  + +  
Sbjct: 478  EIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGL----VPVKDHY-- 531

Query: 709  NSLIDMYMKCGSVEEGIQVFNNM-KERDRVSWNALIVGYTQNGH 837
              ++D+  + G ++E   +   M  E D V W +L+     +G+
Sbjct: 532  TCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGN 575



 Score = 86.3 bits (212), Expect = 8e-15
 Identities = 47/124 (37%), Positives = 69/124 (55%)
 Frame = +1

Query: 1   DMYSKCGFVDCSRKVFDGMPERNVVSWNSLITCYDQNGPATEALNILVKMMNCGVKPDEV 180
           DMY KCG V+  R VF+ M ER+ VSWN++I  Y QNG  TEAL I  +M+  G +PD V
Sbjct: 434 DMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHV 493

Query: 181 TLASVVSACACLSLIKEGKQIHAQIIKCDKLRSDLVICNALVDMYAKCSKITEARQIFDN 360
           T+  V+SAC+   L++EG+     +     L         +VD+  +   + EA  +   
Sbjct: 494 TMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQT 553

Query: 361 MPIK 372
           MP++
Sbjct: 554 MPME 557