BLASTX nr result
ID: Bupleurum21_contig00023948
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00023948
(648 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003529632.1| PREDICTED: tRNA wybutosine-synthesizing prot... 254 1e-65
emb|CBI23243.3| unnamed protein product [Vitis vinifera] 249 3e-64
ref|XP_002268884.1| PREDICTED: tRNA wybutosine-synthesizing prot... 249 3e-64
ref|XP_004155603.1| PREDICTED: tRNA wybutosine-synthesizing prot... 243 2e-62
ref|XP_004134760.1| PREDICTED: LOW QUALITY PROTEIN: tRNA wybutos... 243 2e-62
>ref|XP_003529632.1| PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4-like [Glycine
max]
Length = 1068
Score = 254 bits (648), Expect = 1e-65
Identities = 131/212 (61%), Positives = 162/212 (76%), Gaps = 4/212 (1%)
Frame = +2
Query: 23 MDFDKRKTATLSSINTPPQDYTDKSPKGTLDLPILPLLNAINSHPSFFTTSSCSGRISIL 202
M+F+KRK ATL+S+++ +DKSPKG+LD I+PLLN +N +PS+FTTSSCSGRISIL
Sbjct: 24 MEFEKRKAATLASLSSTE---SDKSPKGSLDAAIVPLLNTLNQNPSYFTTSSCSGRISIL 80
Query: 203 STPXXXXXXXXXX---RGGNWVLISHDPVEPTSVLDLLYNPTSLISS-DPQELVFRFEPL 370
+ P RGG W+ +SHDP +P SVL LL+ S S P ELVFRFEPL
Sbjct: 81 AQPLSLSDSPNPKKKARGGTWLFVSHDPADPDSVLSLLFPSESTPSPFAPSELVFRFEPL 140
Query: 371 IIAVECRDVISAQSLVSIAISCGFRESGITSVSKRVIVAIRCSIRLEVPLGDSCNLMVSP 550
IIA+ECRD+ SA SLVS+AISCGFRESGIT+ KR I+AIRCSIR+EVPLGD+ N+MV+P
Sbjct: 141 IIALECRDLSSAHSLVSLAISCGFRESGITNAKKRFIIAIRCSIRMEVPLGDTRNVMVTP 200
Query: 551 DYVRFLVGIANEKMEVNRRRTDQFFDALLSNG 646
YVR+LV +AN+KME NR+RT +FF LLSNG
Sbjct: 201 HYVRYLVQVANDKMEANRKRTQRFFQVLLSNG 232
>emb|CBI23243.3| unnamed protein product [Vitis vinifera]
Length = 1013
Score = 249 bits (636), Expect = 3e-64
Identities = 134/210 (63%), Positives = 163/210 (77%), Gaps = 2/210 (0%)
Frame = +2
Query: 23 MDFDKRKTATLSSI-NTPPQDYTDKSPKGTLDLPILPLLNAINSHPSFFTTSSCSGRISI 199
M+F+KRK ATL+S+ +T P DKSPKGT+D I+PLL+AIN H S+FTTSSCSGRISI
Sbjct: 1 MEFEKRKAATLASMGSTEP----DKSPKGTIDRHIVPLLSAINRHNSYFTTSSCSGRISI 56
Query: 200 LSTPXXXXXXXXXX-RGGNWVLISHDPVEPTSVLDLLYNPTSLISSDPQELVFRFEPLII 376
LS P RGG+W+ I+HD +P SVL LL+ PT+ SS +LVFRFEP I+
Sbjct: 57 LSQPSPAATNAHKKARGGSWLFITHDLADPNSVLALLF-PTTGCSSQHDDLVFRFEPFIV 115
Query: 377 AVECRDVISAQSLVSIAISCGFRESGITSVSKRVIVAIRCSIRLEVPLGDSCNLMVSPDY 556
AVEC+DV +AQ LVS A+SCGFRESGITSVSKRV+VA+RCSIRLEVPLG ++VSP+Y
Sbjct: 116 AVECKDVAAAQLLVSTAVSCGFRESGITSVSKRVMVAVRCSIRLEVPLGGGGRVLVSPEY 175
Query: 557 VRFLVGIANEKMEVNRRRTDQFFDALLSNG 646
VR+LVGIAN+KME NRRRT+ F AL S+G
Sbjct: 176 VRYLVGIANDKMETNRRRTEGFLQALQSSG 205
>ref|XP_002268884.1| PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4-like [Vitis
vinifera]
Length = 1018
Score = 249 bits (636), Expect = 3e-64
Identities = 134/210 (63%), Positives = 163/210 (77%), Gaps = 2/210 (0%)
Frame = +2
Query: 23 MDFDKRKTATLSSI-NTPPQDYTDKSPKGTLDLPILPLLNAINSHPSFFTTSSCSGRISI 199
M+F+KRK ATL+S+ +T P DKSPKGT+D I+PLL+AIN H S+FTTSSCSGRISI
Sbjct: 1 MEFEKRKAATLASMGSTEP----DKSPKGTIDRHIVPLLSAINRHNSYFTTSSCSGRISI 56
Query: 200 LSTPXXXXXXXXXX-RGGNWVLISHDPVEPTSVLDLLYNPTSLISSDPQELVFRFEPLII 376
LS P RGG+W+ I+HD +P SVL LL+ PT+ SS +LVFRFEP I+
Sbjct: 57 LSQPSPAATNAHKKARGGSWLFITHDLADPNSVLALLF-PTTGCSSQHDDLVFRFEPFIV 115
Query: 377 AVECRDVISAQSLVSIAISCGFRESGITSVSKRVIVAIRCSIRLEVPLGDSCNLMVSPDY 556
AVEC+DV +AQ LVS A+SCGFRESGITSVSKRV+VA+RCSIRLEVPLG ++VSP+Y
Sbjct: 116 AVECKDVAAAQLLVSTAVSCGFRESGITSVSKRVMVAVRCSIRLEVPLGGGGRVLVSPEY 175
Query: 557 VRFLVGIANEKMEVNRRRTDQFFDALLSNG 646
VR+LVGIAN+KME NRRRT+ F AL S+G
Sbjct: 176 VRYLVGIANDKMETNRRRTEGFLQALQSSG 205
>ref|XP_004155603.1| PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4-like [Cucumis
sativus]
Length = 1035
Score = 243 bits (620), Expect = 2e-62
Identities = 126/212 (59%), Positives = 160/212 (75%), Gaps = 5/212 (2%)
Frame = +2
Query: 23 MDFDKRKTATLSSINTPPQDYTDKSPKGTLDLPILPLLNAINSHPSFFTTSSCSGRISIL 202
M+F+KRK AT++S+ + TDKSPKG+LD PI+PL+N +NSHPS+FTTSSCSGRISIL
Sbjct: 1 MEFEKRKAATMASLGSTE---TDKSPKGSLDTPIIPLINTLNSHPSYFTTSSCSGRISIL 57
Query: 203 STPXXXXXXXXXXR-----GGNWVLISHDPVEPTSVLDLLYNPTSLISSDPQELVFRFEP 367
+ P GG+W+ +SH+ EP SV+DLL+ S + + ELVFRFEP
Sbjct: 58 AQPISTTSAAAPKPKKKALGGSWLFVSHEFAEPNSVIDLLFRSPST-NRELSELVFRFEP 116
Query: 368 LIIAVECRDVISAQSLVSIAISCGFRESGITSVSKRVIVAIRCSIRLEVPLGDSCNLMVS 547
LIIAVEC+D+ SAQ+LVS AISCGFRESGITS SKRVI+AIRCSIR+EVPLG S +MV+
Sbjct: 117 LIIAVECKDLGSAQALVSTAISCGFRESGITSASKRVIIAIRCSIRMEVPLGTSEKIMVT 176
Query: 548 PDYVRFLVGIANEKMEVNRRRTDQFFDALLSN 643
P+YV++LV +ANEKM N++RTD F L S+
Sbjct: 177 PEYVQYLVNVANEKMVANKKRTDGFLKGLQSS 208
>ref|XP_004134760.1| PREDICTED: LOW QUALITY PROTEIN: tRNA wybutosine-synthesizing
protein 2/3/4-like [Cucumis sativus]
Length = 1034
Score = 243 bits (620), Expect = 2e-62
Identities = 126/212 (59%), Positives = 160/212 (75%), Gaps = 5/212 (2%)
Frame = +2
Query: 23 MDFDKRKTATLSSINTPPQDYTDKSPKGTLDLPILPLLNAINSHPSFFTTSSCSGRISIL 202
M+F+KRK AT++S+ + TDKSPKG+LD PI+PL+N +NSHPS+FTTSSCSGRISIL
Sbjct: 1 MEFEKRKAATMASLGSTE---TDKSPKGSLDTPIIPLINTLNSHPSYFTTSSCSGRISIL 57
Query: 203 STPXXXXXXXXXXR-----GGNWVLISHDPVEPTSVLDLLYNPTSLISSDPQELVFRFEP 367
+ P GG+W+ +SH+ EP SV+DLL+ S + + ELVFRFEP
Sbjct: 58 AQPISTTSAAAPKPKKKALGGSWLFVSHEFAEPNSVIDLLFRSPST-NRELSELVFRFEP 116
Query: 368 LIIAVECRDVISAQSLVSIAISCGFRESGITSVSKRVIVAIRCSIRLEVPLGDSCNLMVS 547
LIIAVEC+D+ SAQ+LVS AISCGFRESGITS SKRVI+AIRCSIR+EVPLG S +MV+
Sbjct: 117 LIIAVECKDLGSAQALVSTAISCGFRESGITSASKRVIIAIRCSIRMEVPLGTSEKIMVT 176
Query: 548 PDYVRFLVGIANEKMEVNRRRTDQFFDALLSN 643
P+YV++LV +ANEKM N++RTD F L S+
Sbjct: 177 PEYVQYLVNVANEKMVANKKRTDGFLKGLQSS 208