BLASTX nr result

ID: Bupleurum21_contig00023922 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00023922
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004162499.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CU...   214   8e-54
ref|XP_004136459.1| PREDICTED: DDB1- and CUL4-associated factor ...   214   8e-54
ref|XP_003527808.1| PREDICTED: DDB1- and CUL4-associated factor ...   210   8e-53
ref|XP_003523712.1| PREDICTED: DDB1- and CUL4-associated factor ...   209   1e-52
ref|XP_002280997.2| PREDICTED: DDB1- and CUL4-associated factor ...   209   2e-52

>ref|XP_004162499.1| PREDICTED: LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor
            homolog 1-like [Cucumis sativus]
          Length = 1900

 Score =  214 bits (544), Expect = 8e-54
 Identities = 113/167 (67%), Positives = 124/167 (74%), Gaps = 4/167 (2%)
 Frame = +3

Query: 3    VIINSEVWDLRKLRLLRSVPSLDQTVVTFNGSGDVIYATLRRNLDDVTSALHTRRIKHPL 182
            VIINSEVWDLRK RLLRSVPSLDQT +TFN SGDVIYA LRRNL+DV SA+HTRR+KHPL
Sbjct: 1669 VIINSEVWDLRKFRLLRSVPSLDQTAITFNASGDVIYAILRRNLEDVMSAVHTRRVKHPL 1728

Query: 183  YSAFRTVDAVNYSDITTIPVDRCVLDFATEPTDSIVGLVTMDDPDEMCSSARVFEIGRRR 362
            ++AFRT+DAVNYSDI TIP+DRCVLDF TE TDS VGL+TMDD DEM SSARV+EIGRRR
Sbjct: 1729 FAAFRTIDAVNYSDIATIPLDRCVLDFTTEKTDSFVGLITMDDQDEMFSSARVYEIGRRR 1788

Query: 363  PM--XXXXXXXXXXXXXXXXXXXXXXXXPLLG--IVGDGVSDMDDMS 491
            P                           P+LG  I GDG SD DDMS
Sbjct: 1789 PTDDDSDPDDAESEEDEDEDDDDDDSLDPILGPDIDGDGESDSDDMS 1835


>ref|XP_004136459.1| PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Cucumis
            sativus]
          Length = 1915

 Score =  214 bits (544), Expect = 8e-54
 Identities = 113/167 (67%), Positives = 124/167 (74%), Gaps = 4/167 (2%)
 Frame = +3

Query: 3    VIINSEVWDLRKLRLLRSVPSLDQTVVTFNGSGDVIYATLRRNLDDVTSALHTRRIKHPL 182
            VIINSEVWDLRK RLLRSVPSLDQT +TFN SGDVIYA LRRNL+DV SA+HTRR+KHPL
Sbjct: 1684 VIINSEVWDLRKFRLLRSVPSLDQTAITFNASGDVIYAILRRNLEDVMSAVHTRRVKHPL 1743

Query: 183  YSAFRTVDAVNYSDITTIPVDRCVLDFATEPTDSIVGLVTMDDPDEMCSSARVFEIGRRR 362
            ++AFRT+DAVNYSDI TIP+DRCVLDF TE TDS VGL+TMDD DEM SSARV+EIGRRR
Sbjct: 1744 FAAFRTIDAVNYSDIATIPLDRCVLDFTTEKTDSFVGLITMDDQDEMFSSARVYEIGRRR 1803

Query: 363  PM--XXXXXXXXXXXXXXXXXXXXXXXXPLLG--IVGDGVSDMDDMS 491
            P                           P+LG  I GDG SD DDMS
Sbjct: 1804 PTDDDSDPDDAESEEDEDEDDDDDDSLDPILGPDIDGDGESDSDDMS 1850


>ref|XP_003527808.1| PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Glycine
            max]
          Length = 1868

 Score =  210 bits (535), Expect = 8e-53
 Identities = 110/167 (65%), Positives = 123/167 (73%), Gaps = 4/167 (2%)
 Frame = +3

Query: 3    VIINSEVWDLRKLRLLRSVPSLDQTVVTFNGSGDVIYATLRRNLDDVTSALHTRRIKHPL 182
            VIINSEVWDLRK RLLRSVPSLDQT +TFN  GDV+YA LRRNL+DV SA+HTRR+KHPL
Sbjct: 1636 VIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPL 1695

Query: 183  YSAFRTVDAVNYSDITTIPVDRCVLDFATEPTDSIVGLVTMDDPDEMCSSARVFEIGRRR 362
            ++AFRTVDA+NYSDI TIPVDRCVLDFA EPTDS VGL+TMDD DEM +SAR++EIGRRR
Sbjct: 1696 FAAFRTVDAINYSDIATIPVDRCVLDFAAEPTDSFVGLITMDDQDEMYASARIYEIGRRR 1755

Query: 363  PM--XXXXXXXXXXXXXXXXXXXXXXXXPLL--GIVGDGVSDMDDMS 491
            P                           PLL  G+ GD  SD DDMS
Sbjct: 1756 PTDDDSDPDDAESEEEDEDDDDDDPDVDPLLGPGLGGDSCSDADDMS 1802


>ref|XP_003523712.1| PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Glycine
            max]
          Length = 1857

 Score =  209 bits (533), Expect = 1e-52
 Identities = 110/167 (65%), Positives = 123/167 (73%), Gaps = 4/167 (2%)
 Frame = +3

Query: 3    VIINSEVWDLRKLRLLRSVPSLDQTVVTFNGSGDVIYATLRRNLDDVTSALHTRRIKHPL 182
            VIINSEVWDLRK RLLRSVPSLDQT +TFN  GDV+YA LRRNL+DV SA+HTRR+KHPL
Sbjct: 1625 VIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPL 1684

Query: 183  YSAFRTVDAVNYSDITTIPVDRCVLDFATEPTDSIVGLVTMDDPDEMCSSARVFEIGRRR 362
            ++AFRTVDA+NYSDI TIPVDRCVLDFA EPTDS VGL+TMDD DEM +SAR++EIGRRR
Sbjct: 1685 FAAFRTVDAINYSDIATIPVDRCVLDFAAEPTDSFVGLITMDDQDEMYASARIYEIGRRR 1744

Query: 363  PM--XXXXXXXXXXXXXXXXXXXXXXXXPLL--GIVGDGVSDMDDMS 491
            P                           PLL  G+ GD  SD DDMS
Sbjct: 1745 PTDDDSDPDDAESEEEDEDDDDDDPDVDPLLSPGLGGDSGSDADDMS 1791


>ref|XP_002280997.2| PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Vitis
            vinifera]
          Length = 2024

 Score =  209 bits (531), Expect = 2e-52
 Identities = 112/166 (67%), Positives = 124/166 (74%), Gaps = 3/166 (1%)
 Frame = +3

Query: 3    VIINSEVWDLRKLRLLRSVPSLDQTVVTFNGSGDVIYATLRRNLDDVTSALHTRRIKHPL 182
            VIINSEVWDLRK RLLR+VPSLDQTV+TFN  GDVIYA LRRNL+D+ SA+H+RR KHPL
Sbjct: 1790 VIINSEVWDLRKFRLLRTVPSLDQTVITFNSRGDVIYAILRRNLEDIMSAVHSRRAKHPL 1849

Query: 183  YSAFRTVDAVNYSDITTIPVDRCVLDFATEPTDSIVGLVTMDDPDEMCSSARVFEIGRRR 362
            +SAFRTVDAVNYSDI TI VDRCVLDFATEPTDS VGLV+MDD DEM SSAR++EIGRRR
Sbjct: 1850 FSAFRTVDAVNYSDIATITVDRCVLDFATEPTDSFVGLVSMDDHDEMFSSARMYEIGRRR 1909

Query: 363  PM-XXXXXXXXXXXXXXXXXXXXXXXXPLLG--IVGDGVSDMDDMS 491
            P                          PLLG  + GDG SD DD+S
Sbjct: 1910 PTDDDSDPDDAESEEDDEDEDEDADEDPLLGPALDGDGESDGDDLS 1955


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