BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00023644
         (1367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...   254   3e-65
emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]   254   4e-65
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t...   237   6e-60
gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsi...   232   2e-58
gb|AAT71979.1| At5g39185 [Arabidopsis thaliana]                       229   1e-57

>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score =  254 bits (650), Expect = 3e-65
 Identities = 118/285 (41%), Positives = 183/285 (64%), Gaps = 3/285 (1%)
 Frame = -1

Query: 1319 SSYDLAANDMPGNLITQTQLKGDNFDEWTRAIKTSLRAKKKIGFIDGSITQPSEASDEYD 1140
            S YDL A D  G +I+   LK +N++EW    KT+LR++KK GF+DG+I QP + S + +
Sbjct: 19   SPYDLTAADNSGAVISHPILKTNNYEEWACGFKTALRSRKKFGFLDGTIPQPLDGSPDLE 78

Query: 1139 DWISVNSMLVSWIMNTIESKLRSTISYRESARDLWIDIQERFNVPNGPRIQQLKAELHTC 960
            DW+++N++LVSW+  TI+S+L + IS+R+ ARDLW  I++RF+V NGP+ Q++KA+L TC
Sbjct: 79   DWLTINALLVSWMKMTIDSELLTNISHRDVARDLWEQIRKRFSVSNGPKNQKMKADLATC 138

Query: 959  KQVQGMSIEDYYAKLKKLWEALAEVDPIPTCECGKCTCNIAAKLEKREENAKVHQFLMGV 780
            KQ +GM++E YY KL K+W+ +    P+  C+CG+C CN+    EK  E+  VHQ+L G+
Sbjct: 139  KQ-EGMTVEGYYGKLNKIWDNINSYRPLRICKCGRCICNLGTDQEKYREDDMVHQYLYGL 197

Query: 779  DDGLYETVRSTLLAADVVGNMNKIYSSLIREERLRMATKTNNERPDVMSFIAQSGAN--- 609
            ++  + T+RS+L +   +  + ++Y+ + +EE +     +N ER DV +F  Q       
Sbjct: 198  NETKFHTIRSSLTSRVPLPGLEEVYNIVRQEEDMVNNRSSNEERTDVTAFAVQMRPRSEV 257

Query: 608  MGRNEPRLESKETTRSCTHCKRTGHEIDTCFQLHGYPEWWPDRSK 474
            +       E  +  + CTHC R GH  + CF L GYPEWW DR +
Sbjct: 258  ISEKFANSEKLQNKKLCTHCNRGGHSPENCFVLIGYPEWWGDRPR 302


>emb|CAN82073.1| hypothetical protein VITISV_036538 [Vitis vinifera]
          Length = 1157

 Score =  254 bits (649), Expect = 4e-65
 Identities = 129/280 (46%), Positives = 174/280 (62%)
 Frame = -1

Query: 1313 YDLAANDMPGNLITQTQLKGDNFDEWTRAIKTSLRAKKKIGFIDGSITQPSEASDEYDDW 1134
            Y L +ND PGN+ITQ QLK             +LRAKKK GF+DGSI QP   S E +DW
Sbjct: 5    YALTSNDNPGNIITQVQLK-------------ALRAKKKYGFVDGSIKQPDNDSPELEDW 51

Query: 1133 ISVNSMLVSWIMNTIESKLRSTISYRESARDLWIDIQERFNVPNGPRIQQLKAELHTCKQ 954
             ++NSMLVSW                    +LW +I+++F++ NGPR+QQLK+ L  CKQ
Sbjct: 52   WTINSMLVSW--------------------ELWEEIKQQFSIGNGPRVQQLKSYLVNCKQ 91

Query: 953  VQGMSIEDYYAKLKKLWEALAEVDPIPTCECGKCTCNIAAKLEKREENAKVHQFLMGVDD 774
             +G  I  YY KLK LW+ L   D IP C C +C C I  +LEK+ E  +VHQFLMG+D+
Sbjct: 92   -EGQGIIVYYGKLKSLWDELNNYDSIPVCTCTRCKCKITTQLEKKREEERVHQFLMGLDE 150

Query: 773  GLYETVRSTLLAADVVGNMNKIYSSLIREERLRMATKTNNERPDVMSFIAQSGANMGRNE 594
              Y TVRS +L+ + + N+N++Y+ ++++ER+R  T+T  ER   MSF  Q G   GRN 
Sbjct: 151  DGYGTVRSNILSIEPLSNLNRVYAMIVQQERVRTMTRTKEERGSPMSFAVQVG---GRN- 206

Query: 593  PRLESKETTRSCTHCKRTGHEIDTCFQLHGYPEWWPDRSK 474
            P  + K+ T  C++CKR GHE+D+CFQ   YPEWW DR +
Sbjct: 207  PGGDGKDKTVICSNCKRKGHEVDSCFQRIAYPEWWGDRPR 246



 Score = 65.5 bits (158), Expect = 3e-08
 Identities = 29/58 (50%), Positives = 41/58 (70%)
 Frame = -2

Query: 214 DHISRMLIGAGEQHGGLYYYYGSIKASAFKASGMDSFDLWHQRMGHPSIKVLEKVPHV 41
           DH SRMLIGAGEQ  GLY+  G     A+K + + S++LW++RMGHPS K+++ +  V
Sbjct: 378 DHNSRMLIGAGEQREGLYFLKGVTPIRAYKTTSIASYELWNRRMGHPSSKIVDLIYEV 435


>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1491

 Score =  237 bits (604), Expect = 6e-60
 Identities = 106/284 (37%), Positives = 181/284 (63%), Gaps = 3/284 (1%)
 Frame = -1

Query: 1319 SSYDLAANDMPGNLITQTQLKGDNFDEWTRAIKTSLRAKKKIGFIDGSITQPSEASDEYD 1140
            S Y LA++D PG +I+   L GDN++EW+  +  +L+AK+K GFI+GSI++P   + +Y+
Sbjct: 25   SPYTLASSDNPGAMISSVMLTGDNYNEWSTEMLNALQAKRKTGFINGSISKPPLDNPDYE 84

Query: 1139 DWISVNSMLVSWIMNTIESKLRSTISYRESARDLWIDIQERFNVPNGPRIQQLKAELHTC 960
            +W +VNSM+V WI  +IE K++ST+++   A  LW ++++RF+V N  R+ Q+KA+L  C
Sbjct: 85   NWQAVNSMIVGWIRASIEPKVKSTVTFISDAHQLWSELKQRFSVGNKVRVHQIKAQLAAC 144

Query: 959  KQVQGMSIEDYYAKLKKLWEALAEVDPIPTCECGKCTCNIAAKLEKREENAKVHQFLMGV 780
            +Q  G  + DYY +L KLWE      PI  C+CG CTC    +  K  E  K+HQF++G+
Sbjct: 145  RQ-DGQPVIDYYGRLCKLWEEFQIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVLGL 203

Query: 779  DDGLYETVRSTLLAADVVGNMNKIYSSLIREERLRMATKTNNERPDVMSFIAQSG---AN 609
            DD  +  + +TL+A D   ++ +IYS ++REE+   + +   ++   + F+ +     A+
Sbjct: 204  DDSRFGGLSATLIAMDPFPSLGEIYSRVVREEQRLASVQIREQQQSAIGFLTRQSEVTAD 263

Query: 608  MGRNEPRLESKETTRSCTHCKRTGHEIDTCFQLHGYPEWWPDRS 477
               +   ++S++ +  C+HC R+GHE   C+Q+ G+P+WW +R+
Sbjct: 264  GRTDSSIIKSRDRSVLCSHCGRSGHEKKDCWQIVGFPDWWTERT 307



 Score = 57.8 bits (138), Expect = 7e-06
 Identities = 27/62 (43%), Positives = 34/62 (54%)
 Frame = -2

Query: 232 TLRV*QDHISRMLIGAGEQHGGLYYYYGSIKASAFKASGMDSFDLWHQRMGHPSIKVLEK 53
           T+ V QD  SR LIG GE+  G+YY   +   +  K        LWHQR+GHPS  VL  
Sbjct: 468 TICVLQDRFSRTLIGTGEERDGVYYLTDAATTTVHKVDVTTDHALWHQRLGHPSFSVLSS 527

Query: 52  VP 47
           +P
Sbjct: 528 LP 529


>gb|AAC67205.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1413

 Score =  232 bits (591), Expect = 2e-58
 Identities = 104/284 (36%), Positives = 179/284 (63%), Gaps = 3/284 (1%)
 Frame = -1

Query: 1319 SSYDLAANDMPGNLITQTQLKGDNFDEWTRAIKTSLRAKKKIGFIDGSITQPSEASDEYD 1140
            S Y LA++D PG +I+   L GDN++EW+  +  +L+AK+K GFI+GSI++P   + +Y+
Sbjct: 25   SPYTLASSDNPGAMISSVMLTGDNYNEWSTKMLNALQAKRKTGFINGSISKPPLDNPDYE 84

Query: 1139 DWISVNSMLVSWIMNTIESKLRSTISYRESARDLWIDIQERFNVPNGPRIQQLKAELHTC 960
            +W +VNSM+V WI  +IE K++ST+++   A  LW ++++RF+V N   + Q+K +L  C
Sbjct: 85   NWQAVNSMIVGWIRASIEPKVKSTVTFICDAHQLWSELKQRFSVGNKVHVHQIKTQLAAC 144

Query: 959  KQVQGMSIEDYYAKLKKLWEALAEVDPIPTCECGKCTCNIAAKLEKREENAKVHQFLMGV 780
            +Q  G  + DYY +L KLWE      PI  C+CG CTC    +  K  E  K+HQF++G+
Sbjct: 145  RQ-DGQPVIDYYGRLCKLWEEFQIYKPITVCKCGLCTCGATLEPSKEREEEKIHQFVLGL 203

Query: 779  DDGLYETVRSTLLAADVVGNMNKIYSSLIREERLRMATKTNNERPDVMSFIAQSG---AN 609
            DD  +  + +TL+A D   ++ +IYS ++REE+   + +   ++   + F+ +     A+
Sbjct: 204  DDSRFGGLSATLIAMDPFPSLGEIYSRVVREEQRLASVQIREQQQSAIGFLTRQSEVTAD 263

Query: 608  MGRNEPRLESKETTRSCTHCKRTGHEIDTCFQLHGYPEWWPDRS 477
               +   ++S++ +  C+HC R+GHE   C+Q+ G+P+WW +R+
Sbjct: 264  GRTDSSIIKSRDRSVLCSHCGRSGHEKKDCWQIVGFPDWWTERT 307



 Score = 57.4 bits (137), Expect = 9e-06
 Identities = 27/62 (43%), Positives = 34/62 (54%)
 Frame = -2

Query: 232 TLRV*QDHISRMLIGAGEQHGGLYYYYGSIKASAFKASGMDSFDLWHQRMGHPSIKVLEK 53
           T+ V QD  SR LIG GE+  G+YY   +   +  K        LWHQR+GHPS  VL  
Sbjct: 468 TICVLQDRFSRTLIGTGEERDGVYYLTDAATTTVHKVDITTDHALWHQRLGHPSFSVLSS 527

Query: 52  VP 47
           +P
Sbjct: 528 LP 529


>gb|AAT71979.1| At5g39185 [Arabidopsis thaliana]
          Length = 348

 Score =  229 bits (584), Expect = 1e-57
 Identities = 114/289 (39%), Positives = 180/289 (62%), Gaps = 1/289 (0%)
 Frame = -1

Query: 1355 TIAMTGTSSKRS-SSYDLAANDMPGNLITQTQLKGDNFDEWTRAIKTSLRAKKKIGFIDG 1179
            T + T T  +R+ S YDL + D PG LI++  L+G N+DEW   ++ +L+A+KK GF DG
Sbjct: 9    TSSSTTTQPRRTISPYDLTSGDNPGTLISKPLLRGPNYDEWATNLRLALKARKKFGFADG 68

Query: 1178 SITQPSEASDEYDDWISVNSMLVSWIMNTIESKLRSTISYRESARDLWIDIQERFNVPNG 999
            +I QP E + ++DDWI+ N+++VSW+  TI   L +++S+ + + D+W  IQ+RF V NG
Sbjct: 69   TIPQPDETNPDFDDWIANNALVVSWMKLTIHESLATSMSHLDDSHDMWTHIQKRFGVKNG 128

Query: 998  PRIQQLKAELHTCKQVQGMSIEDYYAKLKKLWEALAEVDPIPTCECGKCTCNIAAKLEKR 819
             RIQ+LK EL TC+Q +G  IE YY KL +LW +LA+     T E          ++ K 
Sbjct: 129  QRIQRLKTELATCRQ-KGTPIETYYGKLSQLWRSLADYQQAKTME----------EVRKE 177

Query: 818  EENAKVHQFLMGVDDGLYETVRSTLLAADVVGNMNKIYSSLIREERLRMATKTNNERPDV 639
             E  K+HQFLMG+D+ +Y  V+S LL+   + ++ + Y++L ++E  +  ++ ++ER D 
Sbjct: 178  REEDKLHQFLMGLDESMYGAVKSALLSRVPLPSLEEAYNTLTQDEESKSLSRLHDERNDG 237

Query: 638  MSFIAQSGANMGRNEPRLESKETTRSCTHCKRTGHEIDTCFQLHGYPEW 492
            +SF  Q+     R     ++K++   C+HC R GH  + CF+L GYP W
Sbjct: 238  VSFAVQT---TPRTRSLTKNKDSAIVCSHCGRLGHLAENCFKLVGYPPW 283