BLASTX nr result

ID: Bupleurum21_contig00023605 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00023605
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243...    66   3e-09
emb|CBI31232.3| unnamed protein product [Vitis vinifera]               66   3e-09
emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]    65   4e-09
ref|XP_002337003.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-c...    59   3e-07

>ref|XP_002270719.2| PREDICTED: uncharacterized protein LOC100243264 [Vitis vinifera]
          Length = 495

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 35/53 (66%), Positives = 43/53 (81%)
 Frame = +2

Query: 2   EKSGPPHLPNFVSTVEIGGKSFKGQIAKTKKIAEMNAAKAAYICLTDQERQSS 160
           EKSG  H+P F+STVEI G++F GQ AKTKK+AEMNAAKAAY  L  +ER+S+
Sbjct: 260 EKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHL--KERRSN 310


>emb|CBI31232.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 35/53 (66%), Positives = 43/53 (81%)
 Frame = +2

Query: 2   EKSGPPHLPNFVSTVEIGGKSFKGQIAKTKKIAEMNAAKAAYICLTDQERQSS 160
           EKSG  H+P F+STVEI G++F GQ AKTKK+AEMNAAKAAY  L  +ER+S+
Sbjct: 259 EKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHL--KERRSN 309


>emb|CAN79168.1| hypothetical protein VITISV_028064 [Vitis vinifera]
          Length = 292

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 32/49 (65%), Positives = 40/49 (81%)
 Frame = +2

Query: 2   EKSGPPHLPNFVSTVEIGGKSFKGQIAKTKKIAEMNAAKAAYICLTDQE 148
           EKSG  H+P F+STVEI G++F GQ AKTKK+AEMNAAKAAY  L +++
Sbjct: 244 EKSGVSHMPTFLSTVEIEGETFVGQKAKTKKLAEMNAAKAAYTHLKERK 292


>ref|XP_002337003.1| predicted protein [Populus trichocarpa] gi|222837556|gb|EEE75921.1|
           predicted protein [Populus trichocarpa]
          Length = 330

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 34/57 (59%), Positives = 39/57 (68%)
 Frame = +2

Query: 2   EKSGPPHLPNFVSTVEIGGKSFKGQIAKTKKIAEMNAAKAAYICLTDQERQSSSVTG 172
           +KSG  H+P FVS VEI G+ F GQ AKTKK AEM+AAK AY  L  Q+R SS   G
Sbjct: 104 DKSGEAHVPTFVSKVEIEGEIFTGQGAKTKKQAEMSAAKIAYTAL--QQRYSSQSPG 158


>ref|XP_002878479.1| double-stranded RNA-binding domain (dsrbd)-containing protein 4
           [Arabidopsis lyrata subsp. lyrata]
           gi|297324317|gb|EFH54738.1| double-stranded RNA-binding
           domain (dsrbd)-containing protein 4 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 343

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 37/98 (37%), Positives = 52/98 (53%), Gaps = 20/98 (20%)
 Frame = +2

Query: 8   SGPPHLPNFVSTVEIGGKSFKGQIAKTKKIAEMNAAKAAYICLTD--------------- 142
           SGP H P F+STVE  GK F G  AKTKK+AEM+AAK A++ + +               
Sbjct: 96  SGPSHSPTFISTVEFAGKVFTGDEAKTKKLAEMSAAKIAFMSIKNGNSNQTSSPSLSCER 155

Query: 143 QERQSSSVTGT-----SEVSPVILQPTVIERVKVVATD 241
           QE  SS+V  +     S+ S V++ P    ++  V+ D
Sbjct: 156 QEAASSNVKSSLQEIHSQPSKVVMTPDAPSKLMKVSED 193


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