BLASTX nr result
ID: Bupleurum21_contig00023487
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00023487
(1718 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera] 728 0.0
ref|XP_004134713.1| PREDICTED: general transcription factor IIH ... 699 0.0
ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus commun... 697 0.0
ref|NP_001190745.1| transcription initiation factor TFIIH subuni... 687 0.0
ref|XP_002305144.1| predicted protein [Populus trichocarpa] gi|2... 686 0.0
>emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
Length = 451
Score = 728 bits (1878), Expect = 0.0
Identities = 360/444 (81%), Positives = 401/444 (90%)
Frame = -2
Query: 1495 MPQVRIIAKTFMDMVASLPATKLDNLYHNAFICEAILRSLPPLAKKYVLQMLYIVDVPVT 1316
MPQV+IIAK FMDMVASLPA KLD LYHN FICEAILRSLPPLAKKY+LQMLYI DVPVT
Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDALYHNTFICEAILRSLPPLAKKYILQMLYI-DVPVT 59
Query: 1315 AKLMEEWVPDEGMSKHRVAIDKLVQLRLFTEIVDRKKETSYRLNSTFQKNLQNHIIHGGV 1136
AK MEEWV +G SKHRVAID+L+QLR+FTE DRKKETSYRLN TFQ NLQ H+I+GGV
Sbjct: 60 AKAMEEWVLADGFSKHRVAIDRLIQLRVFTETSDRKKETSYRLNPTFQTNLQKHLIYGGV 119
Query: 1135 LPREPMPSNITVRLPSSADLDAYASEQWESFLLHLISSTDAEATRNISSSMMKIFQRGLL 956
LPREPMPSNITVRLPS DL+AYA QWE FLL LISST E N SSS+MK+FQRGLL
Sbjct: 120 LPREPMPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSLMKVFQRGLL 179
Query: 955 SQRDREAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSG 776
+QR++EAP LTESGFQFLLMDTNAQLWY++REYI++ EERGVD +DLISFLLELSFHV+G
Sbjct: 180 TQREKEAPRLTESGFQFLLMDTNAQLWYIMREYISNSEERGVDPADLISFLLELSFHVTG 239
Query: 775 EAYNMNTLSDAQRSIVKDLADLGLVKLQQGRKESWFIPTKLAINLSISLSDASSRKQGYV 596
EAYN+NTL++ QR+ +KDL DLGLVKLQQGRKESWFIPTKLA NLS+SLSD SSRKQG+V
Sbjct: 240 EAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLSMSLSDTSSRKQGFV 299
Query: 595 VVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITADQIICF 416
VVETNFRLYAY++SKLHCEILRLF+R+EYQLPNLIVGAITKE+LY AF+NGITA+QII F
Sbjct: 300 VVETNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITAEQIISF 359
Query: 415 IQQNAHPRVADRVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSKDVFEAACDFARE 236
+QQNAHPRVA+R P+VPENVTDQIRLWE+DLNRVE PSHLYDEFPS+DVFEAACDFARE
Sbjct: 360 LQQNAHPRVAERTPAVPENVTDQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFARE 419
Query: 235 CGGLLWEDSAKMRLIVKAETYDHM 164
GGLLWEDS KMRL+VKAE + HM
Sbjct: 420 YGGLLWEDSKKMRLVVKAEIHLHM 443
>ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
sativus]
Length = 451
Score = 699 bits (1805), Expect = 0.0
Identities = 344/444 (77%), Positives = 399/444 (89%)
Frame = -2
Query: 1495 MPQVRIIAKTFMDMVASLPATKLDNLYHNAFICEAILRSLPPLAKKYVLQMLYIVDVPVT 1316
MPQV+IIAK FMDMVASLPA KLD LY NAFICEAILRSLPPLAKK+VLQMLYI D PV+
Sbjct: 1 MPQVKIIAKNFMDMVASLPAMKLDQLYENAFICEAILRSLPPLAKKFVLQMLYI-DGPVS 59
Query: 1315 AKLMEEWVPDEGMSKHRVAIDKLVQLRLFTEIVDRKKETSYRLNSTFQKNLQNHIIHGGV 1136
AK MEEWV +G+SK++VA+D+L+QLR+F E DRK+ET+YRLN TFQ NLQ +IHG V
Sbjct: 60 AKSMEEWVLPDGVSKYKVAVDRLIQLRVFIETADRKRETTYRLNPTFQANLQKLLIHGEV 119
Query: 1135 LPREPMPSNITVRLPSSADLDAYASEQWESFLLHLISSTDAEATRNISSSMMKIFQRGLL 956
L REPMPSNITVRLPS DL+AYA +QWE FLL LI+S AE NISSS+MK+FQ+GLL
Sbjct: 120 LAREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLL 179
Query: 955 SQRDREAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSG 776
SQRD+EAP LTESGFQFLLM+TNAQLWY+IREYI++ EERGVD +DLISFLLELSFHV+G
Sbjct: 180 SQRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTG 239
Query: 775 EAYNMNTLSDAQRSIVKDLADLGLVKLQQGRKESWFIPTKLAINLSISLSDASSRKQGYV 596
EAY+++TLSD QR +KDLADLGLVKLQQGRKESWFIPTKLA NLS+SL+D+SSRK G+V
Sbjct: 240 EAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFV 299
Query: 595 VVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITADQIICF 416
VVETNFR+YAY+TSKLHCEILRLF+RIEYQLPNLIVGAITKE+LY AF+NGITA+QI+ F
Sbjct: 300 VVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTF 359
Query: 415 IQQNAHPRVADRVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSKDVFEAACDFARE 236
+QQNAHPRVA+R+PSVPENVTDQIRLWESDLNRV++TP+H YDEFPS++VFEAACD+ARE
Sbjct: 360 LQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYARE 419
Query: 235 CGGLLWEDSAKMRLIVKAETYDHM 164
GLLWEDS +RL+VKA+ + HM
Sbjct: 420 WNGLLWEDSKNLRLVVKADIHTHM 443
>ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative
[Ricinus communis]
Length = 451
Score = 697 bits (1798), Expect = 0.0
Identities = 341/444 (76%), Positives = 398/444 (89%)
Frame = -2
Query: 1495 MPQVRIIAKTFMDMVASLPATKLDNLYHNAFICEAILRSLPPLAKKYVLQMLYIVDVPVT 1316
MPQVRIIAK FMDMVASLPA KLD LY N FIC+AILRSLPPLAKKYV+Q+LYI D PV
Sbjct: 1 MPQVRIIAKNFMDMVASLPAMKLDKLYTNPFICQAILRSLPPLAKKYVVQILYI-DGPVA 59
Query: 1315 AKLMEEWVPDEGMSKHRVAIDKLVQLRLFTEIVDRKKETSYRLNSTFQKNLQNHIIHGGV 1136
K +EEW+ +G SKHRVAID+L QLR+FTEIVDRKKE SY+LN TFQ NLQ H+I GGV
Sbjct: 60 DKTLEEWLLPDGSSKHRVAIDRLTQLRIFTEIVDRKKEISYKLNPTFQTNLQKHLIDGGV 119
Query: 1135 LPREPMPSNITVRLPSSADLDAYASEQWESFLLHLISSTDAEATRNISSSMMKIFQRGLL 956
LP EP+ SNI VRLP+ +LD YA QWE FLLHLI+S AE + N SSSMMKIFQRGLL
Sbjct: 120 LPGEPLASNIAVRLPTLEELDTYALGQWECFLLHLINSGHAERSTNFSSSMMKIFQRGLL 179
Query: 955 SQRDREAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSG 776
+QRD+EAP LTESGFQFLLMDTNAQLWY+IREYI++ EERG+D++DLISFLLELSFH++G
Sbjct: 180 TQRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERGLDSADLISFLLELSFHITG 239
Query: 775 EAYNMNTLSDAQRSIVKDLADLGLVKLQQGRKESWFIPTKLAINLSISLSDASSRKQGYV 596
EAYNM L++ QR+++KDLADLGLVKLQQGRKESWFIPTKLA NLS+SL+D+SSRKQG+V
Sbjct: 240 EAYNMIMLTEFQRNMIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSSRKQGFV 299
Query: 595 VVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITADQIICF 416
VVETNFR+YAY+TSKLHCEI+RLF+R+EYQLPNL+VGA+TKE+LY AF+NGITA+QII F
Sbjct: 300 VVETNFRMYAYSTSKLHCEIMRLFSRVEYQLPNLVVGAMTKESLYSAFENGITAEQIISF 359
Query: 415 IQQNAHPRVADRVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSKDVFEAACDFARE 236
+QQNAHPRVA+R+PSVPENVTDQIRLWESD+NRVEMTP+HLYDEFPS+DVFEAAC+FAR+
Sbjct: 360 LQQNAHPRVAERIPSVPENVTDQIRLWESDMNRVEMTPAHLYDEFPSRDVFEAACNFARD 419
Query: 235 CGGLLWEDSAKMRLIVKAETYDHM 164
GLLWEDS +MR++VKAE + +M
Sbjct: 420 WNGLLWEDSKRMRMVVKAEIHLNM 443
>ref|NP_001190745.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana] gi|332658440|gb|AEE83840.1| transcription
initiation factor TFIIH subunit H4 [Arabidopsis thaliana]
Length = 482
Score = 687 bits (1772), Expect = 0.0
Identities = 340/468 (72%), Positives = 394/468 (84%)
Frame = -2
Query: 1495 MPQVRIIAKTFMDMVASLPATKLDNLYHNAFICEAILRSLPPLAKKYVLQMLYIVDVPVT 1316
MPQV+IIAK FMDMVASLPA KLD LY+N FICEAILRSLPPLAKKYVLQMLYI DVPV
Sbjct: 1 MPQVKIIAKNFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYI-DVPVP 59
Query: 1315 AKLMEEWVPDEGMSKHRVAIDKLVQLRLFTEIVDRKKETSYRLNSTFQKNLQNHIIHGGV 1136
A +MEEWV +G SKHRVAID+L+QLR+F+EI DRK+ TSY LN TFQ NLQ HII GGV
Sbjct: 60 ATMMEEWVLADGTSKHRVAIDRLIQLRIFSEISDRKRGTSYSLNPTFQNNLQKHIISGGV 119
Query: 1135 LPREPMPSNITVRLPSSADLDAYASEQWESFLLHLISSTDAEATRNISSSMMKIFQRGLL 956
LPREPM S+ ++LPS +L+ YA +QWE FLL LI+S E ISSSMMKIFQRGLL
Sbjct: 120 LPREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLL 179
Query: 955 SQRDREAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSG 776
SQRD++ P LTESGFQFLLMDTNAQLWY+IREYI + EER VD +DLISFLLELSFHV+G
Sbjct: 180 SQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTG 239
Query: 775 EAYNMNTLSDAQRSIVKDLADLGLVKLQQGRKESWFIPTKLAINLSISLSDASSRKQGYV 596
+AYN+NTL++ Q + +KDLADLGLVKLQQGRK+SWFIPTKLA NLS+SL+D+S+RK+G+V
Sbjct: 240 QAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFV 299
Query: 595 VVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITADQIICF 416
V+ETNFR+YAY+TSKL CEILRLFARIEYQLPNLI AITKE+LY AF NGIT+DQII F
Sbjct: 300 VMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITF 359
Query: 415 IQQNAHPRVADRVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSKDVFEAACDFARE 236
+QQN+HPR ADRVPS+PENVTDQIRLWE+DL R+EMT +H YDEFPSKDVFEAACDFARE
Sbjct: 360 LQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFARE 419
Query: 235 CGGLLWEDSAKMRLIVKAETYDHMXXXXXXXXXXXXXLYQHMLSCYNI 92
GLLWEDS +MRL+VK+E ++ M H++SCY+I
Sbjct: 420 WRGLLWEDSKRMRLVVKSEVHNQMREFLHTQSSRKRKKSSHLMSCYSI 467
>ref|XP_002305144.1| predicted protein [Populus trichocarpa] gi|222848108|gb|EEE85655.1|
predicted protein [Populus trichocarpa]
Length = 449
Score = 686 bits (1771), Expect = 0.0
Identities = 339/444 (76%), Positives = 395/444 (88%)
Frame = -2
Query: 1495 MPQVRIIAKTFMDMVASLPATKLDNLYHNAFICEAILRSLPPLAKKYVLQMLYIVDVPVT 1316
MPQVRIIAK FMDMVASLPA KLD LY NAFICEAILRSLPPLAKKYV+Q+L+ D PV+
Sbjct: 1 MPQVRIIAKNFMDMVASLPAMKLDTLYQNAFICEAILRSLPPLAKKYVVQILFF-DGPVS 59
Query: 1315 AKLMEEWVPDEGMSKHRVAIDKLVQLRLFTEIVDRKKETSYRLNSTFQKNLQNHIIHGGV 1136
KL+E+WV +G++KHRVAID+L+QLR+F E+ D+K+E+SY+LN TFQ NL+ H+ +GGV
Sbjct: 60 GKLLEQWVLADGVTKHRVAIDRLIQLRIFIEVSDKKRESSYKLNQTFQANLRKHLTNGGV 119
Query: 1135 LPREPMPSNITVRLPSSADLDAYASEQWESFLLHLISSTDAEATRNISSSMMKIFQRGLL 956
LPRE M + V+LPS +LD YA EQWE FLL LISS AE ++SSSMMKIFQRGLL
Sbjct: 120 LPRETMAA--VVKLPSLEELDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLL 177
Query: 955 SQRDREAPMLTESGFQFLLMDTNAQLWYVIREYITHCEERGVDTSDLISFLLELSFHVSG 776
SQRDR+AP LTE GFQFLLMDTNAQLWY+IREYIT+ EERG + +DLISFLLELSFHV+G
Sbjct: 178 SQRDRDAPRLTEGGFQFLLMDTNAQLWYIIREYITNSEERGTEPADLISFLLELSFHVTG 237
Query: 775 EAYNMNTLSDAQRSIVKDLADLGLVKLQQGRKESWFIPTKLAINLSISLSDASSRKQGYV 596
EAYNMNTL++ QR+ +KDLA+LGLVKLQQGRKESWFIPTKLA NLS+SL+D+SSRKQGYV
Sbjct: 238 EAYNMNTLTEIQRNTIKDLAELGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGYV 297
Query: 595 VVETNFRLYAYTTSKLHCEILRLFARIEYQLPNLIVGAITKENLYKAFQNGITADQIICF 416
VVETNFRLYAY++SKLHCEILRLF++IEYQLPNLIVGAITKE+LY AF+NGIT+DQII F
Sbjct: 298 VVETNFRLYAYSSSKLHCEILRLFSKIEYQLPNLIVGAITKESLYTAFENGITSDQIISF 357
Query: 415 IQQNAHPRVADRVPSVPENVTDQIRLWESDLNRVEMTPSHLYDEFPSKDVFEAACDFARE 236
+QQNAHPRVA+R+PSVPENVTDQIRLWE+DLNRVE+TPSH YDEFPS+D FEAACDFARE
Sbjct: 358 LQQNAHPRVAERLPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDTFEAACDFARE 417
Query: 235 CGGLLWEDSAKMRLIVKAETYDHM 164
GLLWEDS KMR++VKAE + +M
Sbjct: 418 WNGLLWEDSKKMRVVVKAEIHMNM 441