BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00023376
         (1600 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271727.1| PREDICTED: DNA repair protein recA homolog 1...   622   e-176
emb|CBI21810.3| unnamed protein product [Vitis vinifera]              619   e-175
ref|XP_003546633.1| PREDICTED: DNA repair protein recA homolog 1...   598   e-168
gb|AAA32855.1| replicase, partial [Arabidopsis thaliana]              595   e-168
ref|NP_565198.1| DNA repair protein recA-like 1 [Arabidopsis tha...   595   e-168

>ref|XP_002271727.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like
            [Vitis vinifera]
          Length = 415

 Score =  622 bits (1605), Expect = e-176
 Identities = 323/405 (79%), Positives = 346/405 (85%), Gaps = 2/405 (0%)
 Frame = +2

Query: 146  LVSSPFFSSSTLLKTPKYKPHFTAK--QIRVLSQFDAKINGVLSGDSDPRFLDRQKALEA 319
            L+ S F SSS         PH  AK  Q+R+  +F+ K+NG LS D DPRFLDRQKALEA
Sbjct: 18   LLPSAFPSSSL-------PPHMGAKRQQMRLRCEFEVKVNGALSSDPDPRFLDRQKALEA 70

Query: 320  AMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKT 499
            AMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKT
Sbjct: 71   AMNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKT 130

Query: 500  TLALHAIAEVQRLGGNAMLVDAEHAFDPTYSKALGVDVENLIVCQPDNGEMALEIADRMC 679
            TLALHAIAEVQ+LGGNAMLVDAEHAFDP YSKALGVDVENLIVCQPD+GEMALEIADRMC
Sbjct: 131  TLALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMALEIADRMC 190

Query: 680  RSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLN 859
            RSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLN
Sbjct: 191  RSGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLN 250

Query: 860  QIRHKIGVYYGNPEVTSGGIALKFFASVRLEIRPTGKIKSVKGDEDIGXXXXXXXXXXXX 1039
            QIR+KIGVYYGNPEVTSGGIALKFFAS+RLEIRP GKIKS KGDEDIG            
Sbjct: 251  QIRYKIGVYYGNPEVTSGGIALKFFASLRLEIRPIGKIKSSKGDEDIGLRVRVRVQKSKV 310

Query: 1040 XXPYKQAEFEIIFGEGVGQLGCILDCAEMMDVVLKKGSWYSYADQRLGQGRDKALQHLKE 1219
              PYKQAEFEIIFGEGV +LGCILDCAE+MDVV+KKGSWYSY D RLGQGRD+ALQ+L+E
Sbjct: 311  SRPYKQAEFEIIFGEGVSKLGCILDCAELMDVVVKKGSWYSYGDNRLGQGRDRALQYLRE 370

Query: 1220 NPALSSEIEKIVRSAMMEGTGQISSFNTRSLPLQLQEEDIDEEFQ 1354
            NP +  EIEKIVR  M EG GQ+ + + R  P   ++EDI EE +
Sbjct: 371  NPLVCHEIEKIVRPMMAEGIGQLGAPHVRLSPTSPEDEDILEEIR 415


>emb|CBI21810.3| unnamed protein product [Vitis vinifera]
          Length = 384

 Score =  619 bits (1596), Expect = e-175
 Identities = 313/379 (82%), Positives = 336/379 (88%)
 Frame = +2

Query: 218  KQIRVLSQFDAKINGVLSGDSDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVE 397
            +Q+R+  +F+ K+NG LS D DPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVE
Sbjct: 6    QQMRLRCEFEVKVNGALSSDPDPRFLDRQKALEAAMNDINSSFGKGSVTRLGSAGGALVE 65

Query: 398  TFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQRLGGNAMLVDAEHAF 577
            TFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQ+LGGNAMLVDAEHAF
Sbjct: 66   TFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAF 125

Query: 578  DPTYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEI 757
            DP YSKALGVDVENLIVCQPD+GEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEI
Sbjct: 126  DPAYSKALGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLICVDSVSALTPRAEIEGEI 185

Query: 758  GMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRHKIGVYYGNPEVTSGGIALKFFA 937
            GMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIR+KIGVYYGNPEVTSGGIALKFFA
Sbjct: 186  GMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFA 245

Query: 938  SVRLEIRPTGKIKSVKGDEDIGXXXXXXXXXXXXXXPYKQAEFEIIFGEGVGQLGCILDC 1117
            S+RLEIRP GKIKS KGDEDIG              PYKQAEFEIIFGEGV +LGCILDC
Sbjct: 246  SLRLEIRPIGKIKSSKGDEDIGLRVRVRVQKSKVSRPYKQAEFEIIFGEGVSKLGCILDC 305

Query: 1118 AEMMDVVLKKGSWYSYADQRLGQGRDKALQHLKENPALSSEIEKIVRSAMMEGTGQISSF 1297
            AE+MDVV+KKGSWYSY D RLGQGRD+ALQ+L+ENP +  EIEKIVR  M EG GQ+ + 
Sbjct: 306  AELMDVVVKKGSWYSYGDNRLGQGRDRALQYLRENPLVCHEIEKIVRPMMAEGIGQLGAP 365

Query: 1298 NTRSLPLQLQEEDIDEEFQ 1354
            + R  P   ++EDI EE +
Sbjct: 366  HVRLSPTSPEDEDILEEIR 384


>ref|XP_003546633.1| PREDICTED: DNA repair protein recA homolog 1, chloroplastic-like
            [Glycine max]
          Length = 414

 Score =  598 bits (1542), Expect = e-168
 Identities = 303/395 (76%), Positives = 338/395 (85%), Gaps = 1/395 (0%)
 Frame = +2

Query: 167  SSSTLLKTP-KYKPHFTAKQIRVLSQFDAKINGVLSGDSDPRFLDRQKALEAAMNDINSS 343
            SSS L   P +++     K   +  + + + NG LSGD DPRF+DRQKALEAAMNDIN++
Sbjct: 19   SSSLLFPFPLRFRAVTAFKHANIQCELEGRPNGALSGDFDPRFIDRQKALEAAMNDINNN 78

Query: 344  FGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTTLALHAIA 523
            FGKGSVTRLGSAGGALVETFPSGCLTLD ALGGGLPKGRI+EIYGPESSGKTTLALHAIA
Sbjct: 79   FGKGSVTRLGSAGGALVETFPSGCLTLDCALGGGLPKGRIIEIYGPESSGKTTLALHAIA 138

Query: 524  EVQRLGGNAMLVDAEHAFDPTYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAIDLI 703
            EVQ+LGGNAMLVDAEHAFDP YSKALGVDVENLIVCQPD+GEMALEIADRMCRSGAIDLI
Sbjct: 139  EVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDHGEMALEIADRMCRSGAIDLI 198

Query: 704  CVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRHKIGV 883
            CVDSVSALTPRAEIEGEIGMQQ+GLQARLMSQALRKMSGNASKAGCTLIFLNQIR+KIGV
Sbjct: 199  CVDSVSALTPRAEIEGEIGMQQIGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGV 258

Query: 884  YYGNPEVTSGGIALKFFASVRLEIRPTGKIKSVKGDEDIGXXXXXXXXXXXXXXPYKQAE 1063
            YYGNPEVTSGGIALKFFAS+RLE+RPTGKIKS KGDE+IG              PYK AE
Sbjct: 259  YYGNPEVTSGGIALKFFASLRLEVRPTGKIKSAKGDEEIGLKVRLRVQKSKVSRPYKIAE 318

Query: 1064 FEIIFGEGVGQLGCILDCAEMMDVVLKKGSWYSYADQRLGQGRDKALQHLKENPALSSEI 1243
            FEIIFGEG+ +LGCILDCAEM D+V KKGSWYSY D RLGQGRDKA+Q+LKEN  L  EI
Sbjct: 319  FEIIFGEGISKLGCILDCAEMTDIVSKKGSWYSYGDHRLGQGRDKAIQYLKENTHLLEEI 378

Query: 1244 EKIVRSAMMEGTGQISSFNTRSLPLQLQEEDIDEE 1348
            EK+VRS++++GT Q S  + ++  +  Q++D+ EE
Sbjct: 379  EKVVRSSLIDGTNQTSPVHMKNSSVLHQDDDMFEE 413


>gb|AAA32855.1| replicase, partial [Arabidopsis thaliana]
          Length = 438

 Score =  595 bits (1535), Expect = e-168
 Identities = 312/409 (76%), Positives = 343/409 (83%), Gaps = 9/409 (2%)
 Frame = +2

Query: 155  SPFFSSSTLLKTPKYKPH--FTAKQI--RVLSQFDAKINGVLSGDSDPRFLDRQKALEAA 322
            SP    S+      Y P   + AK++  ++ S+FD +ING LS D+D RFLDRQKALEAA
Sbjct: 30   SPSLRFSSCYSRRLYSPVTVYAAKKLSHKISSEFDDRINGALSPDADSRFLDRQKALEAA 89

Query: 323  MNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTT 502
            MNDINSSFGKGSVTRLGSAGGALVETF SG LTLD ALGGGLPKGR+VEIYGPESSGKTT
Sbjct: 90   MNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALGGGLPKGRVVEIYGPESSGKTT 149

Query: 503  LALHAIAEVQRLGGNAMLVDAEHAFDPTYSKALGVDVENLIVCQPDNGEMALEIADRMCR 682
            LALHAIAEVQ+LGGNAMLVDAEHAFDP YSKALGVDVENLIVCQPDNGEMALE ADRMCR
Sbjct: 150  LALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALETADRMCR 209

Query: 683  SGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQ 862
            SGA+DLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQ
Sbjct: 210  SGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQ 269

Query: 863  IRHKIGVYYGNPEVTSGGIALKFFASVRLEIRPTGKIKSVKGDEDIGXXXXXXXXXXXXX 1042
            IR+KIGVYYGNPEVTSGGIALKFFASVRLEIR  GKIKS KGDEDIG             
Sbjct: 270  IRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRARVRVQKSKVS 329

Query: 1043 XPYKQAEFEIIFGEGVGQLGCILDCAEMMDVVLKKGSWYSYADQRLGQGRDKALQHLKEN 1222
             PYKQAEFEI+FGEGV +LGC+LDCAE+M+VV+KKGSWYSY DQRLGQGR+KALQHL+EN
Sbjct: 330  RPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLGQGREKALQHLREN 389

Query: 1223 PALSSEIEKIVRSAMMEG-----TGQISSFNTRSLPLQLQEEDIDEEFQ 1354
            PAL  EIEK VR  M++G     T  +SS ++ +   + +EED  ++FQ
Sbjct: 390  PALQDEIEKKVRLLMLDGEVHRSTPLMSSSSSSASHREEEEEDSLDDFQ 438


>ref|NP_565198.1| DNA repair protein recA-like 1 [Arabidopsis thaliana]
            gi|2500098|sp|Q39199.1|RECAC_ARATH RecName: Full=DNA
            repair protein recA homolog 1, chloroplastic; AltName:
            Full=Recombinase A homolog 1; Flags: Precursor
            gi|289208|gb|AAA61781.1| chloroplast DNA repair protein
            precursor [Arabidopsis thaliana]
            gi|3152570|gb|AAC17051.1| Match to nuclear-encoded
            chloroplast DNA repair protein (E. coli recA homolog)
            gb|L15229 [Arabidopsis thaliana]
            gi|15292903|gb|AAK92822.1| putative replicase
            [Arabidopsis thaliana] gi|21281181|gb|AAM45008.1|
            putative replicase [Arabidopsis thaliana]
            gi|332198076|gb|AEE36197.1| DNA repair protein recA-like
            1 [Arabidopsis thaliana]
          Length = 439

 Score =  595 bits (1535), Expect = e-168
 Identities = 312/409 (76%), Positives = 343/409 (83%), Gaps = 9/409 (2%)
 Frame = +2

Query: 155  SPFFSSSTLLKTPKYKPH--FTAKQI--RVLSQFDAKINGVLSGDSDPRFLDRQKALEAA 322
            SP    S+      Y P   + AK++  ++ S+FD +ING LS D+D RFLDRQKALEAA
Sbjct: 31   SPSLRFSSCYSRRLYSPVTVYAAKKLSHKISSEFDDRINGALSPDADSRFLDRQKALEAA 90

Query: 323  MNDINSSFGKGSVTRLGSAGGALVETFPSGCLTLDFALGGGLPKGRIVEIYGPESSGKTT 502
            MNDINSSFGKGSVTRLGSAGGALVETF SG LTLD ALGGGLPKGR+VEIYGPESSGKTT
Sbjct: 91   MNDINSSFGKGSVTRLGSAGGALVETFSSGILTLDLALGGGLPKGRVVEIYGPESSGKTT 150

Query: 503  LALHAIAEVQRLGGNAMLVDAEHAFDPTYSKALGVDVENLIVCQPDNGEMALEIADRMCR 682
            LALHAIAEVQ+LGGNAMLVDAEHAFDP YSKALGVDVENLIVCQPDNGEMALE ADRMCR
Sbjct: 151  LALHAIAEVQKLGGNAMLVDAEHAFDPAYSKALGVDVENLIVCQPDNGEMALETADRMCR 210

Query: 683  SGAIDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQ 862
            SGA+DLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQ
Sbjct: 211  SGAVDLICVDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQ 270

Query: 863  IRHKIGVYYGNPEVTSGGIALKFFASVRLEIRPTGKIKSVKGDEDIGXXXXXXXXXXXXX 1042
            IR+KIGVYYGNPEVTSGGIALKFFASVRLEIR  GKIKS KGDEDIG             
Sbjct: 271  IRYKIGVYYGNPEVTSGGIALKFFASVRLEIRSAGKIKSSKGDEDIGLRARVRVQKSKVS 330

Query: 1043 XPYKQAEFEIIFGEGVGQLGCILDCAEMMDVVLKKGSWYSYADQRLGQGRDKALQHLKEN 1222
             PYKQAEFEI+FGEGV +LGC+LDCAE+M+VV+KKGSWYSY DQRLGQGR+KALQHL+EN
Sbjct: 331  RPYKQAEFEIMFGEGVSKLGCVLDCAEIMEVVVKKGSWYSYEDQRLGQGREKALQHLREN 390

Query: 1223 PALSSEIEKIVRSAMMEG-----TGQISSFNTRSLPLQLQEEDIDEEFQ 1354
            PAL  EIEK VR  M++G     T  +SS ++ +   + +EED  ++FQ
Sbjct: 391  PALQDEIEKKVRLLMLDGEVHRSTPLMSSSSSSASHREEEEEDSLDDFQ 439