BLASTX nr result
ID: Bupleurum21_contig00023335
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00023335
(438 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containi... 191 5e-47
emb|CBI38358.3| unnamed protein product [Vitis vinifera] 191 5e-47
emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera] 191 5e-47
ref|XP_002522388.1| pentatricopeptide repeat-containing protein,... 178 5e-43
ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containi... 174 7e-42
>ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 191 bits (485), Expect = 5e-47
Identities = 92/146 (63%), Positives = 115/146 (78%)
Frame = -1
Query: 438 VTWTTMVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDS 259
V+WT+M+SAYA GS + A++ FDQMP KN VSWNSMISCY+++G E LDLF+ M +S
Sbjct: 256 VSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNS 315
Query: 258 EYAPDETTLVSVLSACSQLGDLSMGKKIHDLICNKCLKFSVTLYNALVDMYAKCGYLETA 79
PDE TLVS+L+ACSQLGDL MGKKIH+ I + + VTLYN+L+DMYAKCG + TA
Sbjct: 316 RVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTA 375
Query: 78 MTMFLNMREKNLVSWNVMIGAVALHG 1
+ +FL M KNLVSWNV+IGA+ALHG
Sbjct: 376 LDIFLEMPGKNLVSWNVIIGALALHG 401
Score = 117 bits (293), Expect = 1e-24
Identities = 61/141 (43%), Positives = 81/141 (57%)
Frame = -1
Query: 423 MVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEYAPD 244
+++ Y +CG A++ FD + K VSWNSMI Y G E LF M + PD
Sbjct: 129 LIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPD 188
Query: 243 ETTLVSVLSACSQLGDLSMGKKIHDLICNKCLKFSVTLYNALVDMYAKCGYLETAMTMFL 64
T V++LS CSQ DL +G+ +H I +K + + NALVDMYAKCG L +A +F
Sbjct: 189 GFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFD 248
Query: 63 NMREKNLVSWNVMIGAVALHG 1
+EKN+VSW MI A A HG
Sbjct: 249 RTQEKNVVSWTSMISAYAQHG 269
Score = 81.3 bits (199), Expect = 8e-14
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Frame = -1
Query: 432 WTTMVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEY 253
+ +++ YA CG +A F +MP KN VSWN +I GC E + LF +M
Sbjct: 359 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 418
Query: 252 APDETTLVSVLSACSQLGDLSMGKKIHDLI-CNKCLKFSVTLYNALVDMYAKCGYLETAM 76
PDE TL +LSACS G + MG D + + + Y +VD+ + G L A+
Sbjct: 419 LPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAI 478
Query: 75 TMFLNMREK-NLVSWNVMIGAVALHG 1
+ M K ++V W ++GA +HG
Sbjct: 479 ELIGRMPMKPDVVVWGALLGACRIHG 504
Score = 74.7 bits (182), Expect = 7e-12
Identities = 47/133 (35%), Positives = 65/133 (48%)
Frame = -1
Query: 399 GSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEYAPDETTLVSVL 220
G Q A+R FDQ+P N +NS+I Y + + LF M S +P+E TL VL
Sbjct: 36 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95
Query: 219 SACSQLGDLSMGKKIHDLICNKCLKFSVTLYNALVDMYAKCGYLETAMTMFLNMREKNLV 40
AC +H L + V + NAL+ +Y CG + A +F ++ +K LV
Sbjct: 96 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 155
Query: 39 SWNVMIGAVALHG 1
SWN MIG A G
Sbjct: 156 SWNSMIGGYAHMG 168
>emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 191 bits (485), Expect = 5e-47
Identities = 92/146 (63%), Positives = 115/146 (78%)
Frame = -1
Query: 438 VTWTTMVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDS 259
V+WT+M+SAYA GS + A++ FDQMP KN VSWNSMISCY+++G E LDLF+ M +S
Sbjct: 189 VSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNS 248
Query: 258 EYAPDETTLVSVLSACSQLGDLSMGKKIHDLICNKCLKFSVTLYNALVDMYAKCGYLETA 79
PDE TLVS+L+ACSQLGDL MGKKIH+ I + + VTLYN+L+DMYAKCG + TA
Sbjct: 249 RVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTA 308
Query: 78 MTMFLNMREKNLVSWNVMIGAVALHG 1
+ +FL M KNLVSWNV+IGA+ALHG
Sbjct: 309 LDIFLEMPGKNLVSWNVIIGALALHG 334
Score = 81.3 bits (199), Expect = 8e-14
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Frame = -1
Query: 432 WTTMVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEY 253
+ +++ YA CG +A F +MP KN VSWN +I GC E + LF +M
Sbjct: 292 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 351
Query: 252 APDETTLVSVLSACSQLGDLSMGKKIHDLI-CNKCLKFSVTLYNALVDMYAKCGYLETAM 76
PDE TL +LSACS G + MG D + + + Y +VD+ + G L A+
Sbjct: 352 LPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAI 411
Query: 75 TMFLNMREK-NLVSWNVMIGAVALHG 1
+ M K ++V W ++GA +HG
Sbjct: 412 ELIGRMPMKPDVVVWGALLGACRIHG 437
Score = 79.3 bits (194), Expect = 3e-13
Identities = 57/168 (33%), Positives = 75/168 (44%), Gaps = 35/168 (20%)
Frame = -1
Query: 399 GSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEYAPDETTLVSVL 220
G Q A+R FDQ+P N +NS+I Y + + LF M S +P+E TL VL
Sbjct: 36 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95
Query: 219 SACS-----------------------------------QLGDLSMGKKIHDLICNKCLK 145
AC G + +K+ D I +K L
Sbjct: 96 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTL- 154
Query: 144 FSVTLYNALVDMYAKCGYLETAMTMFLNMREKNLVSWNVMIGAVALHG 1
+ + NALVDMYAKCG L +A +F +EKN+VSW MI A A HG
Sbjct: 155 IDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHG 202
>emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 191 bits (485), Expect = 5e-47
Identities = 92/146 (63%), Positives = 115/146 (78%)
Frame = -1
Query: 438 VTWTTMVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDS 259
V+WT+M+SAYA GS + A++ FDQMP KN VSWNSMISCY+++G E LDLF+ M +S
Sbjct: 328 VSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNS 387
Query: 258 EYAPDETTLVSVLSACSQLGDLSMGKKIHDLICNKCLKFSVTLYNALVDMYAKCGYLETA 79
PDE TLVS+L+ACSQLGDL MGKKIH+ I + + VTLYN+L+DMYAKCG + TA
Sbjct: 388 RVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTA 447
Query: 78 MTMFLNMREKNLVSWNVMIGAVALHG 1
+ +FL M KNLVSWNV+IGA+ALHG
Sbjct: 448 LDIFLEMPGKNLVSWNVIIGALALHG 473
Score = 81.3 bits (199), Expect = 8e-14
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Frame = -1
Query: 432 WTTMVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEY 253
+ +++ YA CG +A F +MP KN VSWN +I GC E + LF +M
Sbjct: 431 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 490
Query: 252 APDETTLVSVLSACSQLGDLSMGKKIHDLI-CNKCLKFSVTLYNALVDMYAKCGYLETAM 76
PDE TL +LSACS G + MG D + + + Y +VD+ + G L A+
Sbjct: 491 LPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAI 550
Query: 75 TMFLNMREK-NLVSWNVMIGAVALHG 1
+ M K ++V W ++GA +HG
Sbjct: 551 ELIGRMPMKPDVVVWGALLGACRIHG 576
Score = 75.1 bits (183), Expect = 5e-12
Identities = 57/180 (31%), Positives = 75/180 (41%), Gaps = 47/180 (26%)
Frame = -1
Query: 399 GSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEYAPDETTLVSVL 220
G Q A+R FDQ+P N +NS+I Y + + LF M S +P+E TL VL
Sbjct: 162 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 221
Query: 219 SACS-----------------------------------QLGDLSMGKKIHDLICNKCL- 148
AC G + +K+ D I +K L
Sbjct: 222 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 281
Query: 147 -----------KFSVTLYNALVDMYAKCGYLETAMTMFLNMREKNLVSWNVMIGAVALHG 1
K + + NAL DMYAKCG L +A +F +EKN+VSW MI A A HG
Sbjct: 282 SWNSMIEITGVKIDIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHG 341
Score = 55.8 bits (133), Expect = 3e-06
Identities = 40/141 (28%), Positives = 63/141 (44%)
Frame = -1
Query: 423 MVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEYAPD 244
+++ Y +CG A++ FD + K VSWNSMI E+ + D+
Sbjct: 255 LIAVYVVCGLIHCARKLFDDITDKTLVSWNSMI----------EITGVKIDIIV------ 298
Query: 243 ETTLVSVLSACSQLGDLSMGKKIHDLICNKCLKFSVTLYNALVDMYAKCGYLETAMTMFL 64
L + + C G+L + I D K +V + +++ YA+ G +E A +F
Sbjct: 299 RNALXDMYAKC---GNLHSAQAIFDRTQEK----NVVSWTSMISAYAQHGSIEVARQIFD 351
Query: 63 NMREKNLVSWNVMIGAVALHG 1
M KN+VSWN MI G
Sbjct: 352 QMPGKNVVSWNSMISCYLREG 372
>ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223538466|gb|EEF40072.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 472
Score = 178 bits (451), Expect = 5e-43
Identities = 87/146 (59%), Positives = 107/146 (73%)
Frame = -1
Query: 438 VTWTTMVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDS 259
V+WT+M++AYA G + A++ FDQMP KN VSWNSMIS Y+Q G E LDLF +M
Sbjct: 256 VSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDLFHEMHSF 315
Query: 258 EYAPDETTLVSVLSACSQLGDLSMGKKIHDLICNKCLKFSVTLYNALVDMYAKCGYLETA 79
P+E TL+SVLSAC Q+GDL MGKKIH+ IC +SVTL N+L+DMYAKCG L A
Sbjct: 316 RVVPNEATLLSVLSACGQIGDLVMGKKIHNYICGTSSMYSVTLCNSLIDMYAKCGALRIA 375
Query: 78 MTMFLNMREKNLVSWNVMIGAVALHG 1
+ +F M KNLVSWNV+IGA+ALHG
Sbjct: 376 IDVFNEMPNKNLVSWNVIIGALALHG 401
Score = 108 bits (271), Expect = 3e-22
Identities = 58/141 (41%), Positives = 83/141 (58%)
Frame = -1
Query: 423 MVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEYAPD 244
+++AY CG + A++ FD M ++ VSWNSMI Y + G EV LF +M + D
Sbjct: 129 LINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEMREIGTEAD 188
Query: 243 ETTLVSVLSACSQLGDLSMGKKIHDLICNKCLKFSVTLYNALVDMYAKCGYLETAMTMFL 64
+ TLV++L CS+ D+++G+ +H I +K + NAL+DMYAKCG L A +F
Sbjct: 189 DFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGALVLAERVFQ 248
Query: 63 NMREKNLVSWNVMIGAVALHG 1
M KN+VSW MI A A G
Sbjct: 249 QMPNKNVVSWTSMITAYAKQG 269
Score = 68.9 bits (167), Expect = 4e-10
Identities = 41/138 (29%), Positives = 65/138 (47%)
Frame = -1
Query: 414 AYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEYAPDETT 235
A + G+ A F+Q+ N +NS+I Y + + L+ + DS +P+E T
Sbjct: 31 AVSDAGNLDYAHLVFNQISIPNKFMYNSLIRGYCNSNSPIKSMFLYRQLIDSGLSPNEFT 90
Query: 234 LVSVLSACSQLGDLSMGKKIHDLICNKCLKFSVTLYNALVDMYAKCGYLETAMTMFLNMR 55
VL AC+ M +H + + N L++ Y CG++ A MF +M
Sbjct: 91 FPFVLKACASKSAHWMSMIVHGHAQKLGFASLICVQNGLINAYIACGFIRYARKMFDDMS 150
Query: 54 EKNLVSWNVMIGAVALHG 1
E++LVSWN MIG + G
Sbjct: 151 ERSLVSWNSMIGGYSKLG 168
Score = 59.7 bits (143), Expect = 2e-07
Identities = 31/81 (38%), Positives = 45/81 (55%)
Frame = -1
Query: 426 TMVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEYAP 247
+++ YA CG+ + A F++MP KN VSWN +I G E ++LF M + P
Sbjct: 361 SLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAGVWP 420
Query: 246 DETTLVSVLSACSQLGDLSMG 184
DE T + +LSACS G + G
Sbjct: 421 DEITFMGLLSACSHSGLVDSG 441
>ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 174 bits (441), Expect = 7e-42
Identities = 81/146 (55%), Positives = 109/146 (74%)
Frame = -1
Query: 438 VTWTTMVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDS 259
V+WT+MV+AYA G ++A + F+ MP KN VSWNS+I C +Q+G +E ++LF MC S
Sbjct: 305 VSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCIS 364
Query: 258 EYAPDETTLVSVLSACSQLGDLSMGKKIHDLICNKCLKFSVTLYNALVDMYAKCGYLETA 79
PD+ TLVS+LS CS GDL++GK+ H IC+ + SVTL N+L+DMYAKCG L+TA
Sbjct: 365 GVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTA 424
Query: 78 MTMFLNMREKNLVSWNVMIGAVALHG 1
+ +F M EKN+VSWNV+IGA+ALHG
Sbjct: 425 IDIFFGMPEKNVVSWNVIIGALALHG 450
Score = 100 bits (250), Expect = 9e-20
Identities = 55/141 (39%), Positives = 83/141 (58%)
Frame = -1
Query: 423 MVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEYAPD 244
+++AY C SA++ FD + + VSWNSMI+ Y + G E + LF +M D
Sbjct: 178 ILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEAD 237
Query: 243 ETTLVSVLSACSQLGDLSMGKKIHDLICNKCLKFSVTLYNALVDMYAKCGYLETAMTMFL 64
TLVS+LSA S+ +L +G+ +H I ++ + NAL+DMYAKCG+L+ A +F
Sbjct: 238 VFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFD 297
Query: 63 NMREKNLVSWNVMIGAVALHG 1
M +K++VSW M+ A A G
Sbjct: 298 QMLDKDVVSWTSMVNAYANQG 318
Score = 88.6 bits (218), Expect = 5e-16
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Frame = -1
Query: 426 TMVSAYAMCGSTQSAKRFFDQMPFKNTVSWNSMISCYIQQGCLSEVLDLFSDMCDSEYAP 247
+++ YA CG+ Q+A F MP KN VSWN +I G E +++F M S P
Sbjct: 410 SLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYP 469
Query: 246 DETTLVSVLSACSQLGDLSMGKKIHDLICNKC-LKFSVTLYNALVDMYAKCGYLETAMTM 70
DE T +LSACS G + MG+ D++ + + V Y +VD+ + G+L AMT+
Sbjct: 470 DEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTL 529
Query: 69 FLNMREK-NLVSWNVMIGAVALHG 1
M K ++V W ++GA ++G
Sbjct: 530 IQKMPVKPDVVVWGALLGACRIYG 553