BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00023330
         (828 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subc...    74   8e-13
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]      73   1e-12
ref|NP_001174286.1| Os05g0235100 [Oryza sativa Japonica Group] g...    73   1e-12
emb|CAH66488.1| OSIGBa0076I14.9 [Oryza sativa Indica Group]            73   1e-12
emb|CAE05417.1| OSJNBa0035I04.5 [Oryza sativa Japonica Group] gi...    73   1e-12

>gb|ABA97658.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1597

 Score = 73.6 bits (179), Expect(2) = 8e-13
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
 Frame = +3

Query: 165  TMKTRAMHGIFKPKSHFNL*AQHIN-IPQL-RPGPCPRYI*SQLKYNHAS*I*CSN*NDS 338
            TM TR   G+ KP    NL A  ++ +P+  R      Y  + ++    +       N +
Sbjct: 1056 TMTTRGKAGVRKPVQRLNLHASTLSPVPRTYRAALADPYWRTAMEEEFTA----LTANRT 1111

Query: 339  WELVPRPQGVNIVLYMWLFI*-VQG*WHSQAHKVHLVITGKSQQIGVDCDDTFSLVVKPA 515
            W+LVPRP G N+V   W+F    Q       +K   V+ G SQ++G+D D+TFS VVKPA
Sbjct: 1112 WDLVPRPSGANVVTGKWIFKHKFQSDGTLDRYKARWVLRGFSQRLGIDFDETFSPVVKPA 1171

Query: 516  TIRTILSIAKGR 551
            T+RT+LS+A  R
Sbjct: 1172 TVRTVLSLAVSR 1183



 Score = 26.2 bits (56), Expect(2) = 8e-13
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 559  PIHQFDVKNVFLN 597
            PIHQ DVKN FL+
Sbjct: 1186 PIHQLDVKNAFLH 1198


>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1480

 Score = 73.2 bits (178), Expect(2) = 1e-12
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
 Frame = +3

Query: 330  NDSWELVPRPQGVNIVLYMWLFI*VQG*WHSQA----HKVHLVITGKSQQIGVDCDDTFS 497
            N++W LVPRP G N+V   W+F   +  +HS      HK   V+ G SQQ G+D D+TFS
Sbjct: 992  NNTWRLVPRPPGANVVTGKWIF---KHKFHSDGTLARHKARWVVRGYSQQHGIDYDETFS 1048

Query: 498  LVVKPATIRTILSIAKGR 551
             VVKPATI  +LSIA  R
Sbjct: 1049 PVVKPATIHVVLSIAASR 1066



 Score = 26.2 bits (56), Expect(2) = 1e-12
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 559  PIHQFDVKNVFLN 597
            PIHQ DVKN FL+
Sbjct: 1069 PIHQLDVKNAFLH 1081


>ref|NP_001174286.1| Os05g0235100 [Oryza sativa Japonica Group]
           gi|255676152|dbj|BAH93014.1| Os05g0235100, partial
           [Oryza sativa Japonica Group]
          Length = 841

 Score = 73.2 bits (178), Expect(2) = 1e-12
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
 Frame = +3

Query: 330 NDSWELVPRPQGVNIVLYMWLFI*VQG*WHSQA----HKVHLVITGKSQQIGVDCDDTFS 497
           N++W LVPRP G N+V   W+F   +  +HS      HK   V+ G SQQ G+D D+TFS
Sbjct: 353 NNTWRLVPRPPGANVVTGKWIF---KHKFHSDGTLARHKARWVVRGYSQQHGIDYDETFS 409

Query: 498 LVVKPATIRTILSIAKGR 551
            VVKPATI  +LSIA  R
Sbjct: 410 PVVKPATIHVVLSIAASR 427



 Score = 26.2 bits (56), Expect(2) = 1e-12
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 559 PIHQFDVKNVFLN 597
           PIHQ DVKN FL+
Sbjct: 430 PIHQLDVKNAFLH 442


>emb|CAH66488.1| OSIGBa0076I14.9 [Oryza sativa Indica Group]
          Length = 1455

 Score = 72.8 bits (177), Expect(2) = 1e-12
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
 Frame = +3

Query: 330  NDSWELVPRPQGVNIVLYMWLFI*VQG*WHSQA----HKVHLVITGKSQQIGVDCDDTFS 497
            N +W LVPRP G N+V   W+F   +  +HS      HK   V+ G SQQ G+D D+TFS
Sbjct: 967  NGTWRLVPRPPGANVVTGKWIF---KHKFHSDGSLARHKARWVVHGYSQQHGIDYDETFS 1023

Query: 498  LVVKPATIRTILSIAKGR 551
             VVKP+TIR +LSIA  R
Sbjct: 1024 PVVKPSTIRVVLSIATSR 1041



 Score = 26.2 bits (56), Expect(2) = 1e-12
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 559  PIHQFDVKNVFLN 597
            PIHQ DVKN FL+
Sbjct: 1044 PIHQLDVKNAFLH 1056


>emb|CAE05417.1| OSJNBa0035I04.5 [Oryza sativa Japonica Group]
           gi|38605921|emb|CAE05956.3| OSJNBb0088C09.15 [Oryza
           sativa Japonica Group]
          Length = 1246

 Score = 72.8 bits (177), Expect(2) = 1e-12
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
 Frame = +3

Query: 330 NDSWELVPRPQGVNIVLYMWLFI*VQG*WHSQA----HKVHLVITGKSQQIGVDCDDTFS 497
           N +W LVPRP G N+V   W+F   +  +HS      HK   V+ G SQQ G+D D+TFS
Sbjct: 758 NGTWRLVPRPPGANVVTGKWIF---KHKFHSDGSLARHKARWVVHGYSQQHGIDYDETFS 814

Query: 498 LVVKPATIRTILSIAKGR 551
            VVKP+TIR +LSIA  R
Sbjct: 815 PVVKPSTIRVVLSIATSR 832



 Score = 26.2 bits (56), Expect(2) = 1e-12
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 559 PIHQFDVKNVFLN 597
           PIHQ DVKN FL+
Sbjct: 835 PIHQLDVKNAFLH 847