BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00023047
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD99220.1| polypeptide with an integrase domain [Petunia x ...   116   2e-24
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis...   112   3e-23
dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis t...   111   5e-23
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...   110   9e-23
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia...   110   2e-22

>dbj|BAD99220.1| polypeptide with an integrase domain [Petunia x hybrida]
          Length = 492

 Score =  116 bits (291), Expect = 2e-24
 Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
 Frame = -1

Query: 355 VLNGKSPYEVMFGTKPDYAILKPLGCLCYITTSKVHRDKFSPRAIPCVFLGYPYGKKAYK 176
           VLNGK PY+V+FG+ PDY+ LK  G LC+++T   HRDK  PRAIP VFLGYP+ +K YK
Sbjct: 218 VLNGKCPYQVLFGSLPDYSHLKSFGSLCFVSTLTRHRDKLMPRAIPGVFLGYPFAQKGYK 277

Query: 175 CLDLETKQIHISRDVVFHEHIFPF-LSITPTQFMPSSVP 62
            L+L+T Q+ +SRDV F E IFPF  S+  ++  P+S P
Sbjct: 278 VLNLQTSQVIVSRDVKFFESIFPFSYSLPMSKLFPASFP 316


>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
            gi|7268152|emb|CAB78488.1| retrovirus-related like
            polyprotein [Arabidopsis thaliana]
          Length = 1489

 Score =  112 bits (280), Expect = 3e-23
 Identities = 51/102 (50%), Positives = 70/102 (68%)
 Frame = -1

Query: 355  VLNGKSPYEVMFGTKPDYAILKPLGCLCYITTSKVHRDKFSPRAIPCVFLGYPYGKKAYK 176
            +LN KSPYE++   +PDY++LK  GCLC+++T+   R KF+PRA  CVFLGYP G K YK
Sbjct: 777  LLNNKSPYELILNKQPDYSLLKNFGCLCFVSTNAHERTKFTPRARACVFLGYPSGYKGYK 836

Query: 175  CLDLETKQIHISRDVVFHEHIFPFLSITPTQFMPSSVPDSLL 50
             LDLE+  + +SR+VVF EH+FPF +           P+S+L
Sbjct: 837  VLDLESHSVTVSRNVVFKEHVFPFKTSELLNKAVDMFPNSIL 878


>dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1098

 Score =  111 bits (278), Expect = 5e-23
 Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 2/107 (1%)
 Frame = -1

Query: 355  VLNGKSPYEVMFGTKPDYAILKPLGCLCYITTSKVHRDKFSPRAIPCVFLGYPYGKKAYK 176
            +L+GKSPYEV+FG++P Y+ L+  GCLCY       +DKFS R+  CVF+GYPYGKK ++
Sbjct: 705  ILHGKSPYEVLFGSRPSYSALRTFGCLCYAHYRARDKDKFSERSRRCVFVGYPYGKKGWR 764

Query: 175  CLDLETKQIHISRDVVFHEHIFPFLSITPTQ--FMPSSVPDSLLVSD 41
              DLE  +  +SRDVVF E +FP+ +I  +   F PS  P S +  D
Sbjct: 765  LYDLEKNKFFVSRDVVFQETVFPYGTIESSSIPFSPSMFPPSTIFHD 811


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score =  110 bits (276), Expect = 9e-23
 Identities = 60/118 (50%), Positives = 75/118 (63%)
 Frame = -1

Query: 355  VLNGKSPYEVMFGTKPDYAILKPLGCLCYITTSKVHRDKFSPRAIPCVFLGYPYGKKAYK 176
            +L+ KSP+E++    PDY  LK  GCLCY +TS   R KF+PRA  CVFLGYP G K YK
Sbjct: 786  LLSNKSPFELLHLKVPDYTSLKVFGCLCYESTSPQQRHKFAPRARACVFLGYPSGYKGYK 845

Query: 175  CLDLETKQIHISRDVVFHEHIFPFLSITPTQFMPSSVPDSLLVSDQIHSHSLSNTPSS 2
             LDLET  IHISR VVF+E +FPF   T    +P  V D   + D +H  ++ N PS+
Sbjct: 846  LLDLETNTIHISRHVVFYETVFPF---TDKTIIPRDVFD---LVDPVH-ENIENPPST 896


>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
            gi|7268497|emb|CAB78748.1| retrotransposon like protein
            [Arabidopsis thaliana]
          Length = 1433

 Score =  110 bits (274), Expect = 2e-22
 Identities = 53/88 (60%), Positives = 59/88 (67%)
 Frame = -1

Query: 355  VLNGKSPYEVMFGTKPDYAILKPLGCLCYITTSKVHRDKFSPRAIPCVFLGYPYGKKAYK 176
            VLN KSPYE +    P Y  LK  GCLCY +TS   R KF PRA  CVFLGYP G K YK
Sbjct: 744  VLNNKSPYEKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEPRARACVFLGYPLGYKGYK 803

Query: 175  CLDLETKQIHISRDVVFHEHIFPFLSIT 92
             LD+ET  + ISR V+FHE IFPF+S T
Sbjct: 804  LLDIETHAVSISRHVIFHEDIFPFISST 831