BLASTX nr result
ID: Bupleurum21_contig00022416
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00022416
(983 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273073.1| PREDICTED: E3 ubiquitin-protein ligase HERC2... 418 e-115
ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arab... 416 e-114
ref|XP_002307065.1| predicted protein [Populus trichocarpa] gi|2... 416 e-114
ref|NP_680156.2| regulator of chromosome condensation repeat-con... 414 e-113
ref|XP_004144697.1| PREDICTED: probable E3 ubiquitin-protein lig... 407 e-111
>ref|XP_002273073.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera]
gi|296082630|emb|CBI21635.3| unnamed protein product
[Vitis vinifera]
Length = 420
Score = 418 bits (1075), Expect = e-115
Identities = 187/296 (63%), Positives = 241/296 (81%)
Frame = +1
Query: 1 VSAGYSHSSAITVDGDLYMWGKNSSGQLGLGKKASKRILTPTKVECLDGVHIKLVALGSD 180
++AGY HS+AIT DG+LYMWGKNS+GQLGLGKKA+ + P+KVECL+G+ IK+VALGS+
Sbjct: 123 IAAGYYHSAAITADGELYMWGKNSNGQLGLGKKAANAVSVPSKVECLNGISIKMVALGSE 182
Query: 181 HSIAVTEKGETXXXXXXXXXXXXXXXQASIFGFLRSSSEYTPRLIKKLEGVKVKSVAAGM 360
HS+A T++GE ++S+ GF R+SSEY PRLI++LEG+KVK+VAAG+
Sbjct: 183 HSVAATDQGEALSWGAGGSGRLGHGHESSLLGFFRTSSEYRPRLIRRLEGIKVKNVAAGL 242
Query: 361 MHSACVDDNGSVFIFGEGSVKKLGFQESKVATTPSTINDVPRSDEVACGGYHTCIITNSG 540
+HSAC+D+NGSVFIFGE ++ K GF+E+K AT PS I+++P S +VACGGYHTC+I++SG
Sbjct: 243 LHSACIDENGSVFIFGERAMDKFGFREAKNATAPSMISELPYSKQVACGGYHTCVISSSG 302
Query: 541 ELFTWGSNENGCLGIGCTDVAHLPERVEGPLVTHSVCKVSCGWKHTAAISGGKIFMWGWG 720
ELFTWGSNENGCLG+G + H PER+EGP + V +VSCGWKHTAAIS G +F WGWG
Sbjct: 303 ELFTWGSNENGCLGMGFMETIHFPERIEGPFSKNPVSQVSCGWKHTAAISEGNVFTWGWG 362
Query: 721 GSHGTFSVDGHSSGGQLGFGDDVDYFEPRMISFGKNVKALQVSCGFNHTAAVLEYV 888
GS+GTFS DGHSSGGQLG G DVD+ +P+M+ F ++V+ALQVSCGFNHT A+LEY+
Sbjct: 363 GSYGTFSDDGHSSGGQLGQGSDVDHIKPKMVEFEESVRALQVSCGFNHTGAILEYI 418
Score = 58.2 bits (139), Expect = 3e-06
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 5/166 (3%)
Frame = +1
Query: 400 IFGEGSVKKLGFQESKVATTPSTINDVPRSD--EVACGGYHTCIITNSGELFTWGSNENG 573
++G G +LG + P+ + +ACGG HT +T SG ++ G N+ G
Sbjct: 37 LWGNGDFGRLGLGSLESQWRPAVCSAFDHHSLVAIACGGAHTLFLTESGCVYAAGLNDFG 96
Query: 574 CLGIGCTDVAHLPERVEGPLVTHSVCKVSCGWKHTAAISG-GKIFMWGWGGSHGTFSVDG 750
LG+ D + E +E + + ++ G+ H+AAI+ G+++MW G
Sbjct: 97 QLGVS-VDKNYTTEPLEVSALPKKIIHIAAGYYHSAAITADGELYMW------------G 143
Query: 751 HSSGGQLGFGDDV--DYFEPRMISFGKNVKALQVSCGFNHTAAVLE 882
+S GQLG G P + + V+ G H+ A +
Sbjct: 144 KNSNGQLGLGKKAANAVSVPSKVECLNGISIKMVALGSEHSVAATD 189
>ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp.
lyrata] gi|297319215|gb|EFH49637.1| hypothetical protein
ARALYDRAFT_487713 [Arabidopsis lyrata subsp. lyrata]
Length = 434
Score = 416 bits (1069), Expect = e-114
Identities = 193/295 (65%), Positives = 235/295 (79%)
Frame = +1
Query: 1 VSAGYSHSSAITVDGDLYMWGKNSSGQLGLGKKASKRILTPTKVECLDGVHIKLVALGSD 180
+SAGY HS+AITVDG+LYMWGKNSSGQLGLGKKA++ + PTKVE L G+ I+ VALGS+
Sbjct: 139 ISAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSE 198
Query: 181 HSIAVTEKGETXXXXXXXXXXXXXXXQASIFGFLRSSSEYTPRLIKKLEGVKVKSVAAGM 360
HS+AVT+ GE Q+S+FG LRS+SE+TPRLIK+LEG+KVK+VAAG+
Sbjct: 199 HSVAVTDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVKNVAAGL 258
Query: 361 MHSACVDDNGSVFIFGEGSVKKLGFQESKVATTPSTINDVPRSDEVACGGYHTCIITNSG 540
+HSAC D+NGS F+FGE S+ K+GF + ATTPS I++VP ++ VACGGYHTC++T G
Sbjct: 259 LHSACTDENGSAFMFGERSINKMGFGGVRNATTPSIISEVPYAEGVACGGYHTCVVTRGG 318
Query: 541 ELFTWGSNENGCLGIGCTDVAHLPERVEGPLVTHSVCKVSCGWKHTAAISGGKIFMWGWG 720
EL+TWGSNENGCLG T V+H P RVEGP + +V +VSCGWKHTAAIS K+F WGWG
Sbjct: 319 ELYTWGSNENGCLGTDSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAISDNKVFTWGWG 378
Query: 721 GSHGTFSVDGHSSGGQLGFGDDVDYFEPRMISFGKNVKALQVSCGFNHTAAVLEY 885
GSHGTFSVDGHSSGGQLG G DVDY P M+ GKNV+A+ +SCGFNHTAAVLE+
Sbjct: 379 GSHGTFSVDGHSSGGQLGHGSDVDYARPAMVDLGKNVRAVHISCGFNHTAAVLEH 433
Score = 59.3 bits (142), Expect = 1e-06
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Frame = +1
Query: 400 IFGEGSVKKLGFQESKVATTPSTINDVPRSD--EVACGGYHTCIITNSGELFTWGSNENG 573
++G G +LG TP+ + + VACGG HT +T + +F G N+ G
Sbjct: 53 MWGSGDYGRLGLGNLDSQWTPAGCSALSDHSIRAVACGGAHTLFLTETRRVFATGLNDCG 112
Query: 574 CLGIGCTDV-AHLPERVEGPLVTHSVCKVSCGWKHTAAIS-GGKIFMWGWGGSHGTFSVD 747
LG+ +DV +H + +E + + +S G+ H+AAI+ G+++MW
Sbjct: 113 QLGV--SDVKSHAMDPLEVSGLDKDILHISAGYYHSAAITVDGELYMW------------ 158
Query: 748 GHSSGGQLGFGDDVDYFEPRMISFGKNVKAL------QVSCGFNHTAAVLE 882
G +S GQLG G R++ V+AL V+ G H+ AV +
Sbjct: 159 GKNSSGQLGLGKKA----ARVVRVPTKVEALHGITIQSVALGSEHSVAVTD 205
>ref|XP_002307065.1| predicted protein [Populus trichocarpa] gi|222856514|gb|EEE94061.1|
predicted protein [Populus trichocarpa]
Length = 419
Score = 416 bits (1069), Expect = e-114
Identities = 196/297 (65%), Positives = 232/297 (78%)
Frame = +1
Query: 1 VSAGYSHSSAITVDGDLYMWGKNSSGQLGLGKKASKRILTPTKVECLDGVHIKLVALGSD 180
+SAGY HS AITVDG+LY WGKNS+GQLGLGKKA + PTKVECL G++IK+VAL S+
Sbjct: 122 ISAGYHHSCAITVDGELYTWGKNSNGQLGLGKKAENVVPVPTKVECLSGINIKMVALASE 181
Query: 181 HSIAVTEKGETXXXXXXXXXXXXXXXQASIFGFLRSSSEYTPRLIKKLEGVKVKSVAAGM 360
HSIAVT+ G+ Q+S+ GF RSSSEYTPR IKKLEGVKVK++AAG+
Sbjct: 182 HSIAVTDGGQALSWGGGGSGRLGHGHQSSLLGFFRSSSEYTPRHIKKLEGVKVKNIAAGL 241
Query: 361 MHSACVDDNGSVFIFGEGSVKKLGFQESKVATTPSTINDVPRSDEVACGGYHTCIITNSG 540
+HSAC+D+NGSV+IFGE +V KL F ++ ATTPS I +P S EVACGGYHTC+IT+ G
Sbjct: 242 LHSACIDENGSVYIFGEKAVDKLAFGDANNATTPSMIGKLPYSQEVACGGYHTCVITSGG 301
Query: 541 ELFTWGSNENGCLGIGCTDVAHLPERVEGPLVTHSVCKVSCGWKHTAAISGGKIFMWGWG 720
EL+TWGSNENGCLG G DV H+PERVEGP + V KVSCGWKHTAAIS G +F WGWG
Sbjct: 302 ELYTWGSNENGCLGNGSIDVLHIPERVEGPFLRSPVEKVSCGWKHTAAISEGNVFTWGWG 361
Query: 721 GSHGTFSVDGHSSGGQLGFGDDVDYFEPRMISFGKNVKALQVSCGFNHTAAVLEYVN 891
GSHGTFS DG SSGGQLG GDD DY P +++F K +KAL+VSCGFNHT A+LE V+
Sbjct: 362 GSHGTFSEDGLSSGGQLGHGDDFDYVNPTLVAFEKKMKALEVSCGFNHTGAILESVD 418
Score = 83.2 bits (204), Expect = 9e-14
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 7/210 (3%)
Frame = +1
Query: 274 GFLRSSSEYTPRLIKK--LEGVKVKSVAAGMMHSACVDDNGSVFIFGEGSVKKLGFQESK 447
G+ S + P+L+ +KS++ G H+ + + G V+ G +LG +
Sbjct: 44 GYGNLDSMWRPKLMNSSSFHNSNLKSISCGGAHTLFLTETGRVYATGLNDFGQLGVSNNT 103
Query: 448 V-ATTPSTINDVPRSD-EVACGGYHTCIITNSGELFTWGSNENGCLGIG--CTDVAHLPE 615
P ++ + + +++ G +H+C IT GEL+TWG N NG LG+G +V +P
Sbjct: 104 TYCMEPLEVSGLKKEIVQISAGYHHSCAITVDGELYTWGKNSNGQLGLGKKAENVVPVPT 163
Query: 616 RVEGPLVTHSVCKVSCGWKHTAAIS-GGKIFMWGWGGSHGTFSVDGHSSGGQLGFGDDVD 792
+VE L ++ V+ +H+ A++ GG+ WG GGS G GH S LGF
Sbjct: 164 KVE-CLSGINIKMVALASEHSIAVTDGGQALSWGGGGS-GRLG-HGHQS-SLLGFFRSSS 219
Query: 793 YFEPRMISFGKNVKALQVSCGFNHTAAVLE 882
+ PR I + VK ++ G H+A + E
Sbjct: 220 EYTPRHIKKLEGVKVKNIAAGLLHSACIDE 249
>ref|NP_680156.2| regulator of chromosome condensation repeat-containing protein
[Arabidopsis thaliana] gi|26452773|dbj|BAC43467.1|
unknown protein [Arabidopsis thaliana]
gi|28973187|gb|AAO63918.1| putative UVB-resistance
protein UVR8 [Arabidopsis thaliana]
gi|332003957|gb|AED91340.1| regulator of chromosome
condensation repeat-containing protein [Arabidopsis
thaliana]
Length = 434
Score = 414 bits (1065), Expect = e-113
Identities = 192/295 (65%), Positives = 234/295 (79%)
Frame = +1
Query: 1 VSAGYSHSSAITVDGDLYMWGKNSSGQLGLGKKASKRILTPTKVECLDGVHIKLVALGSD 180
+SAGY HS+AITVDG+LYMWGKNSSGQLGLGKKA++ + PTKVE L G+ I+ VALGS+
Sbjct: 139 ISAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSE 198
Query: 181 HSIAVTEKGETXXXXXXXXXXXXXXXQASIFGFLRSSSEYTPRLIKKLEGVKVKSVAAGM 360
HS+AVT+ GE Q+S+FG LRS+SE+TPRLIK+LEG+KV +VAAG+
Sbjct: 199 HSVAVTDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVTNVAAGL 258
Query: 361 MHSACVDDNGSVFIFGEGSVKKLGFQESKVATTPSTINDVPRSDEVACGGYHTCIITNSG 540
+HSAC D+NGS F+FGE S+ K+GF + ATTPS I++VP ++EVACGGYHTC++T G
Sbjct: 259 LHSACTDENGSAFMFGEKSINKMGFGGVRNATTPSIISEVPYAEEVACGGYHTCVVTRGG 318
Query: 541 ELFTWGSNENGCLGIGCTDVAHLPERVEGPLVTHSVCKVSCGWKHTAAISGGKIFMWGWG 720
EL+TWGSNENGCLG T V+H P RVEGP + +V +VSCGWKHTAAIS +F WGWG
Sbjct: 319 ELYTWGSNENGCLGTDSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAISDNNVFTWGWG 378
Query: 721 GSHGTFSVDGHSSGGQLGFGDDVDYFEPRMISFGKNVKALQVSCGFNHTAAVLEY 885
GSHGTFSVDGHSSGGQLG G DVDY P M+ GKNV+A+ +SCGFNHTAAVLE+
Sbjct: 379 GSHGTFSVDGHSSGGQLGHGSDVDYARPAMVDLGKNVRAVHISCGFNHTAAVLEH 433
Score = 60.1 bits (144), Expect = 8e-07
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Frame = +1
Query: 400 IFGEGSVKKLGFQESKVATTPSTINDVPRSD--EVACGGYHTCIITNSGELFTWGSNENG 573
++G G +LG TP+ + + VACGG HT +T + +F G N+ G
Sbjct: 53 MWGSGDYGRLGLGNLDSQWTPAVCSALSDHSITAVACGGAHTLFLTETRRVFATGLNDCG 112
Query: 574 CLGIGCTDV-AHLPERVEGPLVTHSVCKVSCGWKHTAAIS-GGKIFMWGWGGSHGTFSVD 747
LG+ +DV +H + +E + + +S G+ H+AAI+ G+++MW
Sbjct: 113 QLGV--SDVKSHAMDPLEVSGLDKDILHISAGYYHSAAITVDGELYMW------------ 158
Query: 748 GHSSGGQLGFGDDVDYFEPRMISFGKNVKAL------QVSCGFNHTAAVLE 882
G +S GQLG G R++ V+AL V+ G H+ AV +
Sbjct: 159 GKNSSGQLGLGKKA----ARVVRVPTKVEALHGITIQSVALGSEHSVAVTD 205
>ref|XP_004144697.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Cucumis
sativus]
Length = 481
Score = 407 bits (1047), Expect = e-111
Identities = 189/295 (64%), Positives = 229/295 (77%)
Frame = +1
Query: 1 VSAGYSHSSAITVDGDLYMWGKNSSGQLGLGKKASKRILTPTKVECLDGVHIKLVALGSD 180
+SAGY+HS +T DG+LYMWG NS+GQLGLGKK++K + PTKV+ LDG+ IK ALGSD
Sbjct: 186 ISAGYNHSCVVTADGELYMWGVNSNGQLGLGKKSAKAVHLPTKVDSLDGIVIKRAALGSD 245
Query: 181 HSIAVTEKGETXXXXXXXXXXXXXXXQASIFGFLRSSSEYTPRLIKKLEGVKVKSVAAGM 360
HSIAV + GE +++ GFL+S+SE+TPRLIK+LEG+KVK VAAGM
Sbjct: 246 HSIAVADGGEVFSWGDGRSGRLGHGHESTFLGFLKSTSEHTPRLIKELEGIKVKHVAAGM 305
Query: 361 MHSACVDDNGSVFIFGEGSVKKLGFQESKVATTPSTINDVPRSDEVACGGYHTCIITNSG 540
+HSACVD+NG+V+IFGE + ++ F E+ ATTPS I+ + +EVACGGYHTC++T G
Sbjct: 306 LHSACVDENGAVYIFGERATNRVSFGEANKATTPSLISTLLDCEEVACGGYHTCVLTKGG 365
Query: 541 ELFTWGSNENGCLGIGCTDVAHLPERVEGPLVTHSVCKVSCGWKHTAAISGGKIFMWGWG 720
+L++WGSNENGCLG G T V+HLPERVEGP V KVSCGWKHTAAISGG IF WGWG
Sbjct: 366 DLYSWGSNENGCLGNGSTSVSHLPERVEGPFSKSPVSKVSCGWKHTAAISGGAIFTWGWG 425
Query: 721 GSHGTFSVDGHSSGGQLGFGDDVDYFEPRMISFGKNVKALQVSCGFNHTAAVLEY 885
GSHGTFSVDGHSSGGQLG G DVDY +P I G+NVK +QVSCGFNHT A+LEY
Sbjct: 426 GSHGTFSVDGHSSGGQLGHGSDVDYVKPTKIDLGENVKVVQVSCGFNHTGAILEY 480
Score = 89.7 bits (221), Expect = 9e-16
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 4/201 (1%)
Frame = +1
Query: 292 SEYTPRLIKKLEGVKVKSVAAGMMHSACVDDNGSVFIFGEGSVKKLGFQESK-VATTPST 468
S+++P + +K +A G H+ + ++G V+ G + +LG + K +T P
Sbjct: 117 SQWSPVPCSSFDREMLKGIACGGAHTLFLTESGRVYATGLNNFGQLGISDEKRFSTEPVE 176
Query: 469 INDVPRSDEVACGGYHTCIITNSGELFTWGSNENGCLGIG--CTDVAHLPERVEGPLVTH 642
+ + ++ G H+C++T GEL+ WG N NG LG+G HLP +V+ L
Sbjct: 177 VRIPKEAMHISAGYNHSCVVTADGELYMWGVNSNGQLGLGKKSAKAVHLPTKVDS-LDGI 235
Query: 643 SVCKVSCGWKHTAAIS-GGKIFMWGWGGSHGTFSVDGHSSGGQLGFGDDVDYFEPRMISF 819
+ + + G H+ A++ GG++F WG G S G GH S LGF PR+I
Sbjct: 236 VIKRAALGSDHSIAVADGGEVFSWGDGRS-GRLG-HGHES-TFLGFLKSTSEHTPRLIKE 292
Query: 820 GKNVKALQVSCGFNHTAAVLE 882
+ +K V+ G H+A V E
Sbjct: 293 LEGIKVKHVAAGMLHSACVDE 313
Score = 69.3 bits (168), Expect = 1e-09
Identities = 70/290 (24%), Positives = 117/290 (40%), Gaps = 16/290 (5%)
Frame = +1
Query: 55 MWGKNSSGQLGLGKKASKRILTPTKVECLDGVHIKLVALGSDHSIAVTEKGETXXXXXXX 234
+WG G+LGLG S+ +P D +K +A G H++ +TE G
Sbjct: 101 VWGNGDFGRLGLGNLDSQ--WSPVPCSSFDREMLKGIACGGAHTLFLTESGRV------Y 152
Query: 235 XXXXXXXXQASIFGFLRSSSEYTPRLIKKLEGVKVKSVAAGMMHSACVDDNGSVFIFGEG 414
Q I R S+E I K + ++AG HS V +G ++++G
Sbjct: 153 ATGLNNFGQLGISDEKRFSTEPVEVRIPK----EAMHISAGYNHSCVVTADGELYMWGVN 208
Query: 415 SVKKLGF--QESKVATTPSTINDVPR--SDEVACGGYHTCIITNSGELFTWGSNENGCLG 582
S +LG + +K P+ ++ + A G H+ + + GE+F+WG +G LG
Sbjct: 209 SNGQLGLGKKSAKAVHLPTKVDSLDGIVIKRAALGSDHSIAVADGGEVFSWGDGRSGRLG 268
Query: 583 IGCTDV---------AHLP---ERVEGPLVTHSVCKVSCGWKHTAAISGGKIFMWGWGGS 726
G H P + +EG V H V+ G H+A +
Sbjct: 269 HGHESTFLGFLKSTSEHTPRLIKELEGIKVKH----VAAGMLHSACVD-----------E 313
Query: 727 HGTFSVDGHSSGGQLGFGDDVDYFEPRMISFGKNVKALQVSCGFNHTAAV 876
+G + G + ++ FG+ P +IS + +V+CG HT +
Sbjct: 314 NGAVYIFGERATNRVSFGEANKATTPSLIS--TLLDCEEVACGGYHTCVL 361