BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00022328
         (638 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi...   322   5e-86
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,...   318   5e-85
ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi...   306   2e-81
ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containi...   301   9e-80
ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containi...   290   1e-76

>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  322 bits (824), Expect = 5e-86
 Identities = 159/212 (75%), Positives = 181/212 (85%)
 Frame = +1

Query: 1   GQSCITMVRMIHTHVEKFGFYGDIFVPNSLIDCYCKCGVVGVLAARKLFRVMEERDTVSW 180
           G+  + +V MIH  VEK GF  DIFVPNSLID Y KCG+ GV AARK+F VM ERDTVSW
Sbjct: 127 GKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSW 186

Query: 181 NTMIGGLVKIGEVKEGRRLFDEMSERDSVSWNTMIDGYVKAREMDAAFELFEKMPDRNVV 360
           N+MIGGLVK+GE+ E RRLFDEM ERD+VSWNT++DGYVKA EM+AAFELFEKMP RNVV
Sbjct: 187 NSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVV 246

Query: 361 SWSTMLSGYCKAGDMETARMLFDKMPVKNLVSWTIIIAGYAEKGFVKEAISLYNQMEEAR 540
           SWSTM+ GY KAGDM+ AR+LFDKMPVKNLV WTI+I+GYAEKG  K+AI+LYNQMEEA 
Sbjct: 247 SWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAG 306

Query: 541 LSPDDGTIISILAACAESGLLGLGKRVHETIE 636
           L  DDGT+ISIL+ACA SGLLGLGKRVH +IE
Sbjct: 307 LKFDDGTVISILSACAVSGLLGLGKRVHASIE 338



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 10/201 (4%)
 Frame = +1

Query: 25  RMIHTHVEKFGFYGDIFVPNSLIDCYCKCGVVGVLAARKLFRVMEERDTVSWNTMIGGLV 204
           + +H  +E+  F     V N+LID Y KCG   +  A  +F  M  +D VSWN +I GL 
Sbjct: 331 KRVHASIERTRFKCSTPVSNALIDMYAKCG--SLENALSIFHGMVRKDVVSWNAIIQGLA 388

Query: 205 KIGEVKEGRRLFDEMSER----DSVSWNTMIDGYVKAREMDAAFELFEKMP-----DRNV 357
             G  ++  +LF  M       D V++  ++     A  +D     F  M         V
Sbjct: 389 MHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEV 448

Query: 358 VSWSTMLSGYCKAGDMETARMLFDKMPVK-NLVSWTIIIAGYAEKGFVKEAISLYNQMEE 534
             +  M+    + G ++ A  L   MP++ N + W  ++           A  +++++ +
Sbjct: 449 EHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVK 508

Query: 535 ARLSPDDGTIISILAACAESG 597
           + LS D G +  +    A +G
Sbjct: 509 SELS-DSGNLSMLSNIYAAAG 528


>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 604

 Score =  318 bits (815), Expect = 5e-85
 Identities = 152/212 (71%), Positives = 179/212 (84%)
 Frame = +1

Query: 1   GQSCITMVRMIHTHVEKFGFYGDIFVPNSLIDCYCKCGVVGVLAARKLFRVMEERDTVSW 180
           G+  +  V+MIH HVEK+GF+GD+FVPNSLID Y KCG++GV  A KLF  M E+D VSW
Sbjct: 133 GKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSW 192

Query: 181 NTMIGGLVKIGEVKEGRRLFDEMSERDSVSWNTMIDGYVKAREMDAAFELFEKMPDRNVV 360
           N+MIGGLVK G++   R+LFDEM+ERD+VSWNT++DGYVKA EM  AF LFEKMP+RNVV
Sbjct: 193 NSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVV 252

Query: 361 SWSTMLSGYCKAGDMETARMLFDKMPVKNLVSWTIIIAGYAEKGFVKEAISLYNQMEEAR 540
           SWSTM+SGYCK GDME ARMLFDKMP KNLV+WTIII+G+AEKG  KEA +LYNQME A 
Sbjct: 253 SWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAG 312

Query: 541 LSPDDGTIISILAACAESGLLGLGKRVHETIE 636
           L PDDGT+ISILAACAESGLL LGK+VH +I+
Sbjct: 313 LKPDDGTLISILAACAESGLLVLGKKVHASIK 344



 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 44/226 (19%)
 Frame = +1

Query: 82  NSLIDCYCKCGVVGVLAARKLFRVMEERDTVSWNTMIGGLVKIGEVKEGRRLFDEMSERD 261
           ++++  YCK G + +  AR LF  M  ++ V+W  +I G  + G  KE   L+++M    
Sbjct: 255 STMVSGYCKTGDMEM--ARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAG 312

Query: 262 ----------------------------------------SVSWNTMIDGYVKAREMDAA 321
                                                   +VS N ++D Y K   +D A
Sbjct: 313 LKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVS-NALVDMYAKCGRVDKA 371

Query: 322 FELFEKMPDRNVVSWSTMLSGYCKAGDMETARMLFDKMPVKNL----VSWTIIIAGYAEK 489
             +F +M  R++VSW+ ML G    G  E A  LF KM  +      V+   I+      
Sbjct: 372 LSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHA 431

Query: 490 GFVKEAISLYNQMEEARLSPDDGTIISILAACAESGLLGLGKRVHE 627
           GFV + +S +N ME      D G +  I        LLG G R+ E
Sbjct: 432 GFVDQGLSYFNSMER-----DHGIVPHIEHYGCMIDLLGRGGRLEE 472



 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
 Frame = +1

Query: 13  ITMVRMIHTHVEKFGFYGDIFVPNSLIDCYCKCGVVGVLAARKLFRVMEERDTVSWNTMI 192
           + + + +H  ++K      + V N+L+D Y KCG V    A  +F  M  RD VSWN M+
Sbjct: 333 LVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVD--KALSIFNEMSMRDLVSWNCML 390

Query: 193 GGLVKIGEVKEGRRLFDEMSER----DSVSWNTMIDGYVKAREMDAAFELFEKMP-DRNV 357
            GL   G  ++  +LF +M +     D V+   ++     A  +D     F  M  D  +
Sbjct: 391 QGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGI 450

Query: 358 V----SWSTMLSGYCKAGDMETARMLFDKMPVK-NLVSWTIII 471
           V     +  M+    + G +E A  L   MP++ N V W  ++
Sbjct: 451 VPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLL 493


>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  306 bits (785), Expect = 2e-81
 Identities = 145/211 (68%), Positives = 171/211 (81%)
 Frame = +1

Query: 1   GQSCITMVRMIHTHVEKFGFYGDIFVPNSLIDCYCKCGVVGVLAARKLFRVMEERDTVSW 180
           G S + +VRMIH HVEKFGFYGDIFVPNSLID Y +CG  G+  A  LF  M+ERD V+W
Sbjct: 132 GPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTW 191

Query: 181 NTMIGGLVKIGEVKEGRRLFDEMSERDSVSWNTMIDGYVKAREMDAAFELFEKMPDRNVV 360
           N+MIGGLV+ GE++   +LFDEM ERD VSWNTM+DGY KA EMD AFELFE+MP RN+V
Sbjct: 192 NSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIV 251

Query: 361 SWSTMLSGYCKAGDMETARMLFDKMPVKNLVSWTIIIAGYAEKGFVKEAISLYNQMEEAR 540
           SWSTM+ GY K GDM+ AR+LFD+ P KN+V WT IIAGYAEKGFV+EA  LY +MEEA 
Sbjct: 252 SWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAG 311

Query: 541 LSPDDGTIISILAACAESGLLGLGKRVHETI 633
           L PDDG +ISILAACAESG+LGLGKR+H ++
Sbjct: 312 LRPDDGFLISILAACAESGMLGLGKRIHASM 342


>ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  301 bits (770), Expect = 9e-80
 Identities = 142/211 (67%), Positives = 169/211 (80%)
 Frame = +1

Query: 1   GQSCITMVRMIHTHVEKFGFYGDIFVPNSLIDCYCKCGVVGVLAARKLFRVMEERDTVSW 180
           G S + +VRMIH HVEK GFYGDIFVPNSLID Y +CG  G+  A  LF  MEERD V+W
Sbjct: 132 GPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTW 191

Query: 181 NTMIGGLVKIGEVKEGRRLFDEMSERDSVSWNTMIDGYVKAREMDAAFELFEKMPDRNVV 360
           N+MIGGLV+ GE++   +LFDEM +RD VSWNTM+DGY KA EMD AFELFE+MP RN+V
Sbjct: 192 NSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIV 251

Query: 361 SWSTMLSGYCKAGDMETARMLFDKMPVKNLVSWTIIIAGYAEKGFVKEAISLYNQMEEAR 540
           SWSTM+ GY K GDM+ ARMLFD+ PVKN+V WT IIAGYAEKG  +EA  LY +MEEA 
Sbjct: 252 SWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAG 311

Query: 541 LSPDDGTIISILAACAESGLLGLGKRVHETI 633
           + PDDG ++SILAACAESG+LGLGKR+H ++
Sbjct: 312 MRPDDGFLLSILAACAESGMLGLGKRIHASM 342


>ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 561

 Score =  290 bits (743), Expect = 1e-76
 Identities = 137/213 (64%), Positives = 173/213 (81%), Gaps = 1/213 (0%)
 Frame = +1

Query: 1   GQSCITMVRMIHTHVEKFGFYGDIFVPNSLIDCYCKCGVVGVLAARKLFRVM-EERDTVS 177
           G   + ++  +H  +EKFGF  D+FVPNSLID Y KCG  G+ AA+KLF  M   RD VS
Sbjct: 156 GNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVS 215

Query: 178 WNTMIGGLVKIGEVKEGRRLFDEMSERDSVSWNTMIDGYVKAREMDAAFELFEKMPDRNV 357
           WN+MI GL K G  +E R++FDEM E+D +SWNTM+DGYVK  +MD AF+LF++MP+RNV
Sbjct: 216 WNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNV 275

Query: 358 VSWSTMLSGYCKAGDMETARMLFDKMPVKNLVSWTIIIAGYAEKGFVKEAISLYNQMEEA 537
           VSWSTM+ GYCKAGDME ARMLFDKMPVKNLVSWTII++G+AEKG  +EAISL++QME+A
Sbjct: 276 VSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKA 335

Query: 538 RLSPDDGTIISILAACAESGLLGLGKRVHETIE 636
            L  D+GT++SILAACAESGLLGLG+++H +I+
Sbjct: 336 CLKLDNGTVMSILAACAESGLLGLGEKIHASIK 368