BLASTX nr result

ID: Bupleurum21_contig00022213 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00022213
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327898.1| predicted protein [Populus trichocarpa] gi|2...    98   6e-19
ref|XP_003539541.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger ...    89   3e-16
ref|XP_002517845.1| nucleic acid binding protein, putative [Rici...    89   4e-16
ref|XP_003526253.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger ...    87   1e-15
ref|XP_002275400.2| PREDICTED: zinc finger protein MAGPIE-like [...    86   2e-15

>ref|XP_002327898.1| predicted protein [Populus trichocarpa] gi|222837307|gb|EEE75686.1|
           predicted protein [Populus trichocarpa]
          Length = 479

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 58/102 (56%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
 Frame = -3

Query: 312 NNASSAIP--LPVQMNNVSSTKDVGSQLVSIPSLYSSQNMSGQCTISATMSATALLQKAA 139
           NNA   +   L + + NV       SQL S+PSLYS+Q      T SA MSATALLQKAA
Sbjct: 317 NNAHEELTSTLVLPLTNVKEAA-AASQLASVPSLYSTQQQQSHQTTSANMSATALLQKAA 375

Query: 138 QIGATSTDPSFLESYGLKCSNINQVQDGSKFFGLFGTNLVTT 13
           QIGATSTDPSFL S+ LK SN  +VQDG+KF GL+G++ V+T
Sbjct: 376 QIGATSTDPSFLGSFALK-SNAKKVQDGNKFCGLYGSSPVST 416


>ref|XP_003539541.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein MAGPIE-like
           [Glycine max]
          Length = 475

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 55/100 (55%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
 Frame = -3

Query: 303 SSAIPLPVQMNNVSSTKDVGSQLVSIPSLYSSQNMSGQCTISATMSATALLQKAAQIGAT 124
           +S   LP+  N V    ++  QL+S+PSLYSSQ+ S Q T SA MSATALLQKAAQIG T
Sbjct: 317 TSTASLPLVNNIVKDNPNL--QLISVPSLYSSQHQSHQTT-SANMSATALLQKAAQIGTT 373

Query: 123 STDPS--FLESYGLKCSNINQVQDGSKFFGLFGTNLVTTT 10
           S+DPS  FL S GLKC++    QDG+KF G++G++ V T+
Sbjct: 374 SSDPSSLFLASIGLKCNSPG--QDGNKFCGMYGSSSVLTS 411


>ref|XP_002517845.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223542827|gb|EEF44363.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 437

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 58/106 (54%), Positives = 71/106 (66%), Gaps = 4/106 (3%)
 Frame = -3

Query: 309 NASSAIPLPVQMNNVSSTKDVGSQLVSIPSLYSSQNMSGQCTISATMSATALLQKAAQIG 130
           + +S++PL    NNV        QLVS+PSLYS+Q    Q   SA MSATALLQKAAQIG
Sbjct: 264 STTSSLPL----NNVKEAA-AAVQLVSVPSLYSTQQQPNQTAPSANMSATALLQKAAQIG 318

Query: 129 ATSTDPSFLESYGLKCS-NINQVQD--GSKFFGL-FGTNLVTTTCL 4
           ATSTDP+FL S+GLK S N +QVQD   +KF GL +G+N   T  +
Sbjct: 319 ATSTDPTFLGSFGLKSSTNNSQVQDQGSNKFCGLIYGSNPTITNII 364


>ref|XP_003526253.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein NUTCRACKER-like
           [Glycine max]
          Length = 472

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 50/81 (61%), Positives = 61/81 (75%), Gaps = 4/81 (4%)
 Frame = -3

Query: 231 SIPSLYSSQNMSG--QCTISATMSATALLQKAAQIGATSTDPSFLESYGLKCSNINQVQD 58
           +IPS YSSQ+     Q   SA MSATALLQKAAQIGATS+DPS+L S GLKC N +Q QD
Sbjct: 340 AIPSWYSSQHQPQHQQACPSANMSATALLQKAAQIGATSSDPSWLGSLGLKCGNNSQGQD 399

Query: 57  G--SKFFGLFGTNLVTTTCLG 1
           G  +K+ G++G++LV TT LG
Sbjct: 400 GNNNKYSGMYGSSLVLTTTLG 420


>ref|XP_002275400.2| PREDICTED: zinc finger protein MAGPIE-like [Vitis vinifera]
          Length = 450

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 54/98 (55%), Positives = 70/98 (71%)
 Frame = -3

Query: 306 ASSAIPLPVQMNNVSSTKDVGSQLVSIPSLYSSQNMSGQCTISATMSATALLQKAAQIGA 127
           +S+++PL    +NV      GSQ+VS+PSLYSSQ+ S Q  +   MSATALLQKAAQ+GA
Sbjct: 306 SSTSLPL----SNVKEA--AGSQIVSVPSLYSSQHHSHQTPLG-NMSATALLQKAAQMGA 358

Query: 126 TSTDPSFLESYGLKCSNINQVQDGSKFFGLFGTNLVTT 13
           TS DP FL S+GLKC + + VQDG+KF GL+  N + T
Sbjct: 359 TSADP-FLGSFGLKCDS-SLVQDGNKFCGLYTANQLPT 394


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