BLASTX nr result
ID: Bupleurum21_contig00022175
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00022175
(440 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI38165.3| unnamed protein product [Vitis vinifera] 225 3e-57
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi... 225 3e-57
ref|XP_002517667.1| pentatricopeptide repeat-containing protein,... 208 4e-52
ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containi... 200 9e-50
ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containi... 196 2e-48
>emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 225 bits (573), Expect = 3e-57
Identities = 106/146 (72%), Positives = 120/146 (82%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
EIFIQNRLIDVYGK CLD AR+LFDRMP RNTFTWNS+I L SG +DEA R+ GSMP
Sbjct: 49 EIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMP 108
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
PDQCSWNS+VSGFAQH+RFEES+E +KMH F LNEY++GS LSACA L D+N G+Q
Sbjct: 109 EPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQ 168
Query: 79 IHACIVKSRYCLDVYMGSALIDMYSK 2
+HA + KSRY DVYMGSALIDMYSK
Sbjct: 169 VHALVSKSRYSTDVYMGSALIDMYSK 194
Score = 72.8 bits (177), Expect = 3e-11
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
++++ + LID+Y K G + A +F M +RN TW
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTW------------------------ 216
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
NSL++ + Q+ E++E ++M +G +E T SV+SACA+L + G Q
Sbjct: 217 -------NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269
Query: 79 IHACIVK-SRYCLDVYMGSALIDMYSK 2
IHA +VK +++ D+ +G+AL+DMY+K
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAK 296
Score = 67.0 bits (162), Expect = 1e-09
Identities = 38/146 (26%), Positives = 70/146 (47%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
++ + N L+D+Y K ++ ARR+FDRM RN + S++ + V A+ + M
Sbjct: 283 DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMT 342
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
+ SWN+L++G+ Q+ EE++ + YT+G++L +
Sbjct: 343 QRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKS------------ 390
Query: 79 IHACIVKSRYCLDVYMGSALIDMYSK 2
D+++G++LIDMY K
Sbjct: 391 ------------DIFVGNSLIDMYMK 404
>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 225 bits (573), Expect = 3e-57
Identities = 106/146 (72%), Positives = 120/146 (82%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
EIFIQNRLIDVYGK CLD AR+LFDRMP RNTFTWNS+I L SG +DEA R+ GSMP
Sbjct: 49 EIFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMP 108
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
PDQCSWNS+VSGFAQH+RFEES+E +KMH F LNEY++GS LSACA L D+N G+Q
Sbjct: 109 EPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQ 168
Query: 79 IHACIVKSRYCLDVYMGSALIDMYSK 2
+HA + KSRY DVYMGSALIDMYSK
Sbjct: 169 VHALVSKSRYSTDVYMGSALIDMYSK 194
Score = 94.4 bits (233), Expect = 9e-18
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 6/152 (3%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
++ + N L+D+Y K ++ ARR+FDRM RN + S++ + V A+ + M
Sbjct: 283 DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMT 342
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
+ SWN+L++G+ Q+ EE++ + YT+G++LSACANL D+ G Q
Sbjct: 343 QRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQ 402
Query: 79 IHACIVKSRYCL------DVYMGSALIDMYSK 2
H ++K + D+++G++LIDMY K
Sbjct: 403 AHTHVLKQGFEFQSGAESDIFVGNSLIDMYMK 434
Score = 72.8 bits (177), Expect = 3e-11
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
++++ + LID+Y K G + A +F M +RN TW
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTW------------------------ 216
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
NSL++ + Q+ E++E ++M +G +E T SV+SACA+L + G Q
Sbjct: 217 -------NSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQ 269
Query: 79 IHACIVK-SRYCLDVYMGSALIDMYSK 2
IHA +VK +++ D+ +G+AL+DMY+K
Sbjct: 270 IHARVVKTNKFRDDLVLGNALVDMYAK 296
>ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543299|gb|EEF44831.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 628
Score = 208 bits (529), Expect = 4e-52
Identities = 92/146 (63%), Positives = 119/146 (81%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
E+FIQNRLID YGK GC D AR++FD+MP++N F+WN+I+ L+ SG +DE R+ SMP
Sbjct: 53 EVFIQNRLIDAYGKCGCFDDARKIFDQMPEKNVFSWNAIVSTLVKSGFLDEGARLFVSMP 112
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
PDQCSWNSL++GFAQH+RFEE++ +KMH GF LNEYT+GS LSACA L+D+ G+Q
Sbjct: 113 EPDQCSWNSLIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQ 172
Query: 79 IHACIVKSRYCLDVYMGSALIDMYSK 2
IH ++KS++ LDVYMGSALID+YSK
Sbjct: 173 IHGLMLKSQFLLDVYMGSALIDIYSK 198
Score = 101 bits (251), Expect = 7e-20
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
++ + N L+D+Y K G ++ AR +FDRMP RN + S++ + V A+ + M
Sbjct: 287 DLILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMI 346
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
+ SWN+L++G+ Q+ EE++ + YT+G++L+ACANL D+ G Q
Sbjct: 347 ERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTFGNLLNACANLADLQLGRQ 406
Query: 79 IHACIVKSRYCL------DVYMGSALIDMYSK 2
HA ++K + DV++G+ALIDMY K
Sbjct: 407 AHAHVLKHGFRFQYGEESDVFVGNALIDMYMK 438
Score = 82.4 bits (202), Expect = 3e-14
Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
++++ + LID+Y K G +D A+R+FD M +RN
Sbjct: 185 DVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVV-------------------------- 218
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
SWNSL++ + Q+ E++E ++M +GF +E T SV+SACA+L G +
Sbjct: 219 -----SWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGLE 273
Query: 79 IHACIVK-SRYCLDVYMGSALIDMYSK 2
IHAC+VK + D+ + +AL+DMY+K
Sbjct: 274 IHACVVKRDKLRDDLILSNALVDMYAK 300
>ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 200 bits (509), Expect = 9e-50
Identities = 94/146 (64%), Positives = 114/146 (78%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
EIFIQNRL+D YGK G + AR++FDRMP RNTF++N+++ L G +DEA V SMP
Sbjct: 53 EIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMP 112
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
PDQCSWN++VSGFAQH+RFEE++ + MHS F LNEY++GS LSACA L D+N G Q
Sbjct: 113 EPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQ 172
Query: 79 IHACIVKSRYCLDVYMGSALIDMYSK 2
IHA I KSRY LDVYMGSAL+DMYSK
Sbjct: 173 IHALISKSRYLLDVYMGSALVDMYSK 198
Score = 100 bits (250), Expect = 9e-20
Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 6/152 (3%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
++ + N L+D+Y K ++ AR +FDRMP RN + S++C + V A+ + +M
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMM 346
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
+ SWN+L++G+ Q+ EE++ + + YT+G++L+ACANL D+ G Q
Sbjct: 347 EKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406
Query: 79 IHACIVKSRYCL------DVYMGSALIDMYSK 2
H I+K + D+++G++LIDMY K
Sbjct: 407 AHTQILKHGFWFQSGEESDIFVGNSLIDMYMK 438
Score = 70.5 bits (171), Expect = 1e-10
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
++++ + L+D+Y K G + A+R FD M RN
Sbjct: 185 DVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIV-------------------------- 218
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
SWNSL++ + Q+ +++E + M G +E T SV+SACA+ + G Q
Sbjct: 219 -----SWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQ 273
Query: 79 IHACIVK-SRYCLDVYMGSALIDMYSK 2
IHA +VK +Y D+ +G+AL+DMY+K
Sbjct: 274 IHARVVKRDKYRNDLVLGNALVDMYAK 300
>ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 196 bits (498), Expect = 2e-48
Identities = 90/146 (61%), Positives = 112/146 (76%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
E FIQNRLIDVYGK GC+D AR+LFDRM +RN F+WNSIICA SG +D+A + MP
Sbjct: 53 ETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMP 112
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
DQCSWNS++SGF QH RF+E++ +MH GF +NEY++GS LSACA L+D+ GSQ
Sbjct: 113 QVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQ 172
Query: 79 IHACIVKSRYCLDVYMGSALIDMYSK 2
IH+ + +S Y DVYMGSAL+DMYSK
Sbjct: 173 IHSLVYRSNYLSDVYMGSALVDMYSK 198
Score = 89.4 bits (220), Expect = 3e-16
Identities = 47/152 (30%), Positives = 84/152 (55%), Gaps = 6/152 (3%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
++ + N L+D+Y K ++ AR +FD MP R+ + S++ + V A+ + +M
Sbjct: 287 DLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMM 346
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
D +WN+L++G Q+ EE++ + YT+G++L+ACANL D+ G Q
Sbjct: 347 VKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQ 406
Query: 79 IHACIVKSRYCL------DVYMGSALIDMYSK 2
H+ ++K + DV++G++LIDMY K
Sbjct: 407 AHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMK 438
Score = 71.6 bits (174), Expect = 6e-11
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Frame = -2
Query: 439 EIFIQNRLIDVYGKLGCLDGARRLFDRMPDRNTFTWNSIICALLNSGCVDEAKRVLGSMP 260
++++ + L+D+Y K G ++ A+ +FD M R+
Sbjct: 185 DVYMGSALVDMYSKCGRVEYAQSVFDEMTVRS---------------------------- 216
Query: 259 CPDQCSWNSLVSGFAQHERFEESIECVIKMHSAGFALNEYTYGSVLSACANLRDVNFGSQ 80
+ SWNSL++ + Q+ +E+++ ++M G +E T SV+SACA + + G Q
Sbjct: 217 ---RVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQ 273
Query: 79 IHACIVK-SRYCLDVYMGSALIDMYSK 2
IHA +VK + D+ +G+AL+DMY+K
Sbjct: 274 IHARVVKCDEFRNDLILGNALLDMYAK 300