BLASTX nr result
ID: Bupleurum21_contig00022142
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00022142
(359 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containi... 221 5e-56
emb|CBI36234.3| unnamed protein product [Vitis vinifera] 221 5e-56
ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containi... 214 4e-54
ref|NP_173004.1| pentatricopeptide repeat-containing protein [Ar... 203 1e-50
ref|XP_002303270.1| predicted protein [Populus trichocarpa] gi|2... 202 2e-50
>ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 221 bits (563), Expect = 5e-56
Identities = 98/119 (82%), Positives = 111/119 (93%)
Frame = -1
Query: 359 FSWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLH 180
FSWNV+VGGYAKAG+FDEAL+LYH+MLW GI+PDVYTFPCVLRTCGG+PDL RGREVHLH
Sbjct: 161 FSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLH 220
Query: 179 VLRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQCLE 3
V+R+G+ +VDV+NALITMYVKCGD++S RLVFDRM RDRISWNAMISGYFEND CLE
Sbjct: 221 VIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLE 279
Score = 82.8 bits (203), Expect = 3e-14
Identities = 44/113 (38%), Positives = 62/113 (54%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SWN M+ GY + E L L+ M + PD+ T V+ C + D GREVH +V
Sbjct: 263 SWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYV 322
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFEN 18
++ G+ EV V N+LI M+ G +VF +M +D +SW AMISGY +N
Sbjct: 323 IKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKN 375
Score = 73.9 bits (180), Expect = 1e-11
Identities = 43/118 (36%), Positives = 61/118 (51%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SW M+ GY K G ++A++ Y M G+ PD T VL C G+ L++G +H
Sbjct: 364 SWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFA 423
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQCLE 3
R G V V N+LI MY KC + VF R+ N++ ISW ++I G N + E
Sbjct: 424 DRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFE 481
Score = 62.8 bits (151), Expect = 3e-08
Identities = 37/110 (33%), Positives = 58/110 (52%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SW ++ G EAL + +M+ + +KP+ T VL C + L G+E+H H
Sbjct: 465 SWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHA 523
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGY 27
LR G G + + NAL+ MYV+CG + F+ +D SWN +++GY
Sbjct: 524 LRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFN-SCEKDVASWNILLTGY 572
>emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 221 bits (563), Expect = 5e-56
Identities = 98/119 (82%), Positives = 111/119 (93%)
Frame = -1
Query: 359 FSWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLH 180
FSWNV+VGGYAKAG+FDEAL+LYH+MLW GI+PDVYTFPCVLRTCGG+PDL RGREVHLH
Sbjct: 161 FSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLH 220
Query: 179 VLRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQCLE 3
V+R+G+ +VDV+NALITMYVKCGD++S RLVFDRM RDRISWNAMISGYFEND CLE
Sbjct: 221 VIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLE 279
Score = 82.8 bits (203), Expect = 3e-14
Identities = 44/113 (38%), Positives = 62/113 (54%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SWN M+ GY + E L L+ M + PD+ T V+ C + D GREVH +V
Sbjct: 263 SWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYV 322
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFEN 18
++ G+ EV V N+LI M+ G +VF +M +D +SW AMISGY +N
Sbjct: 323 IKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKN 375
Score = 73.9 bits (180), Expect = 1e-11
Identities = 43/118 (36%), Positives = 61/118 (51%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SW M+ GY K G ++A++ Y M G+ PD T VL C G+ L++G +H
Sbjct: 364 SWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFA 423
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQCLE 3
R G V V N+LI MY KC + VF R+ N++ ISW ++I G N + E
Sbjct: 424 DRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFE 481
Score = 62.8 bits (151), Expect = 3e-08
Identities = 37/110 (33%), Positives = 58/110 (52%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SW ++ G EAL + +M+ + +KP+ T VL C + L G+E+H H
Sbjct: 465 SWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHA 523
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGY 27
LR G G + + NAL+ MYV+CG + F+ +D SWN +++GY
Sbjct: 524 LRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFN-SCEKDVASWNILLTGY 572
>ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 214 bits (546), Expect = 4e-54
Identities = 95/119 (79%), Positives = 109/119 (91%)
Frame = -1
Query: 359 FSWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLH 180
FSWNV+VGGYAKAG FDEALDLYH+MLW G+KPDVYTFPCVLRTCGG+P+L RGRE+H+H
Sbjct: 173 FSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVH 232
Query: 179 VLRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQCLE 3
V+R+G+ +VDV+NALITMYVKCGDV + RLVFD+M NRDRISWNAMISGYFEN CLE
Sbjct: 233 VIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLE 291
Score = 82.8 bits (203), Expect = 3e-14
Identities = 45/117 (38%), Positives = 63/117 (53%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SWN M+ GY + G E L L+ M+ + PD+ T V+ C + D GR++H +V
Sbjct: 275 SWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYV 334
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQCL 6
LR +G + + N+LI MY G + VF R RD +SW AMISGY + CL
Sbjct: 335 LRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGY---ENCL 388
Score = 65.9 bits (159), Expect = 3e-09
Identities = 37/118 (31%), Positives = 56/118 (47%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SW M+ GY +AL+ Y M GI PD T VL C + +L+ G +H
Sbjct: 376 SWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVA 435
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQCLE 3
+ G V N+LI MY KC + +F + ++ +SW ++I G N++C E
Sbjct: 436 KQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFE 493
Score = 65.9 bits (159), Expect = 3e-09
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 31/141 (21%)
Frame = -1
Query: 350 NVMVGGYAKAGFFDEALDLYHKML------WAGI------------------------KP 261
N ++ YAK D+AL+++H L W I KP
Sbjct: 448 NSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLKP 507
Query: 260 DVYTFPCVLRTCGGVPDLERGREVHLHVLRFGYGVEVDVLNALITMYVKCGDV-YSGRLV 84
+ T CVL C + L G+E+H H LR G + + NA++ MYV+CG + Y+ +
Sbjct: 508 NSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQF 567
Query: 83 FDRMVNRDRISWNAMISGYFE 21
F V+ + SWN +++GY E
Sbjct: 568 FS--VDHEVTSWNILLTGYAE 586
>ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein
[Arabidopsis thaliana] gi|300825685|gb|ADK35876.1|
chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 203 bits (516), Expect = 1e-50
Identities = 91/120 (75%), Positives = 106/120 (88%), Gaps = 1/120 (0%)
Frame = -1
Query: 359 FSWNVMVGGYAKAGFFDEALDLYHKMLWAG-IKPDVYTFPCVLRTCGGVPDLERGREVHL 183
FSWNV+VGGYAK G+FDEA+ LYH+MLW G +KPDVYTFPCVLRTCGG+PDL RG+EVH+
Sbjct: 161 FSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHV 220
Query: 182 HVLRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQCLE 3
HV+R+GY +++DV+NALITMYVKCGDV S RL+FDRM RD ISWNAMISGYFEN C E
Sbjct: 221 HVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHE 280
Score = 89.4 bits (220), Expect = 3e-16
Identities = 41/113 (36%), Positives = 61/113 (53%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SWN M+ GY + G E L+L+ M + PD+ T V+ C + D GR++H +V
Sbjct: 264 SWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYV 323
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFEN 18
+ G+ V++ V N+L MY+ G +F RM +D +SW MISGY N
Sbjct: 324 ITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYN 376
Score = 72.4 bits (176), Expect = 4e-11
Identities = 40/118 (33%), Positives = 59/118 (50%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SW M+ GY D+A+D Y M +KPD T VL C + DL+ G E+H
Sbjct: 365 SWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLA 424
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQCLE 3
++ V V N LI MY KC + +F + ++ ISW ++I+G N++C E
Sbjct: 425 IKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFE 482
Score = 67.0 bits (162), Expect = 2e-09
Identities = 37/115 (32%), Positives = 61/115 (53%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SW ++ G EAL ++ + + ++P+ T L C + L G+E+H HV
Sbjct: 466 SWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHV 524
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQ 12
LR G G++ + NAL+ MYV+CG + + F+ +D SWN +++GY E Q
Sbjct: 525 LRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQ-KKDVTSWNILLTGYSERGQ 578
>ref|XP_002303270.1| predicted protein [Populus trichocarpa] gi|222840702|gb|EEE78249.1|
predicted protein [Populus trichocarpa]
Length = 805
Score = 202 bits (514), Expect = 2e-50
Identities = 91/119 (76%), Positives = 105/119 (88%)
Frame = -1
Query: 359 FSWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLH 180
FSWNV+VGGY KAGFFDEAL LYH++LWAGI+PDVYTFP VLR+C G DL RGREVH H
Sbjct: 101 FSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAH 160
Query: 179 VLRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQCLE 3
V+RF + ++VDV+NALITMYVKCGDV S R++FD+M RDRISWNAMISGYFEND+CLE
Sbjct: 161 VVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLE 219
Score = 76.6 bits (187), Expect = 2e-12
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SWN M+ GY + E L+L+ +M I PD+ T V+ C + D G ++H +V
Sbjct: 203 SWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYV 262
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFEN---DQCL 6
+R Y + V N+LI MY+ G VF M RD +SW +ISG +N D+ L
Sbjct: 263 VRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKAL 322
Query: 5 E 3
E
Sbjct: 323 E 323
Score = 72.4 bits (176), Expect = 4e-11
Identities = 39/118 (33%), Positives = 61/118 (51%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SW ++ G D+AL+ Y M G PD T VL C + L+ G ++H
Sbjct: 304 SWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELA 363
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGYFENDQCLE 3
R G+ + V V N+LI MY KC + +F ++ ++D ISW ++I+G N++C E
Sbjct: 364 ERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFE 421
Score = 58.9 bits (141), Expect = 4e-07
Identities = 34/110 (30%), Positives = 57/110 (51%)
Frame = -1
Query: 356 SWNVMVGGYAKAGFFDEALDLYHKMLWAGIKPDVYTFPCVLRTCGGVPDLERGREVHLHV 177
SW ++ G EAL + KM+ KP+ T L C V L G+E+H H
Sbjct: 405 SWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHA 463
Query: 176 LRFGYGVEVDVLNALITMYVKCGDVYSGRLVFDRMVNRDRISWNAMISGY 27
L+ G G + + NA++ +YV+CG + + F+ + +D +WN +++GY
Sbjct: 464 LKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGY 512