BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00022018
         (420 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript...    82   4e-14
gb|ABK28243.1| unknown [Arabidopsis thaliana]                          82   4e-14
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali...    82   4e-14
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               79   3e-13
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    74   9e-12

>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
           to a family of Arabidopsis thaliana predicted proteins,
           which have similarity to reverse transcriptases; see
           T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
           gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
           thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 12/127 (9%)
 Frame = +3

Query: 9   WLAYKRRLPTRDRLHRFGIPVQKNCLLCNSAHENTEHLFFQCPFSGVV------ISGMPI 170
           W+    RL TRDRL  +G+ +   CLLCN+  ++  HLFF+C FSGVV       + +  
Sbjct: 147 WVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNP 206

Query: 171 PR------NWSASPPGDRNILQQLQSLFLACAVYGVWRERNNRSHGMGTCTAELVSASIK 332
           P       NW  SP  ++NI   ++  F +C VY +WRERN R H   + + E +   I+
Sbjct: 207 PAQLMDCLNWLLSPSREKNICLIIRLAFHSC-VYAIWRERNQRLHSGVSRSTESILKDIQ 265

Query: 333 NMVRDKV 353
            ++R ++
Sbjct: 266 LIIRARL 272


>gb|ABK28243.1| unknown [Arabidopsis thaliana]
          Length = 297

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 12/127 (9%)
 Frame = +3

Query: 9   WLAYKRRLPTRDRLHRFGIPVQKNCLLCNSAHENTEHLFFQCPFSGVV------ISGMPI 170
           W+    RL TRDRL  +G+ +   CLLCN+  ++  HLFF+C FSGVV       + +  
Sbjct: 147 WVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNP 206

Query: 171 PR------NWSASPPGDRNILQQLQSLFLACAVYGVWRERNNRSHGMGTCTAELVSASIK 332
           P       NW  SP  ++NI   ++  F +C VY +WRERN R H   + + E +   I+
Sbjct: 207 PAQLMDCLNWLLSPSREKNICLIIRLAFHSC-VYAIWRERNQRLHSGVSRSTESILKDIQ 265

Query: 333 NMVRDKV 353
            ++R ++
Sbjct: 266 LIIRARL 272


>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
          Length = 296

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 12/127 (9%)
 Frame = +3

Query: 9   WLAYKRRLPTRDRLHRFGIPVQKNCLLCNSAHENTEHLFFQCPFSGVV------ISGMPI 170
           W+    RL TRDRL  +G+ +   CLLCN+  ++  HLFF+C FSGVV       + +  
Sbjct: 147 WVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNP 206

Query: 171 PR------NWSASPPGDRNILQQLQSLFLACAVYGVWRERNNRSHGMGTCTAELVSASIK 332
           P       NW  SP  ++NI   ++  F +C VY +WRERN R H   + + E +   I+
Sbjct: 207 PAQLMDCLNWLLSPSREKNICLIIRLAFHSC-VYAIWRERNQRLHSGVSRSTESILKDIQ 265

Query: 333 NMVRDKV 353
            ++R ++
Sbjct: 266 LIIRARL 272


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 48/127 (37%), Positives = 66/127 (51%), Gaps = 12/127 (9%)
 Frame = +3

Query: 9    WLAYKRRLPTRDRLHRFGIPVQKNCLLCNSAHENTEHLFFQCPFSGVVISGM-------P 167
            W+    RL TRDRL R+G  +   C+LCN   E+ EHLFF+C FS  + S         P
Sbjct: 1004 WVVAHNRLHTRDRLRRWGFSIPPTCVLCNDLDESREHLFFRCQFSSEIWSFFMRALNLNP 1063

Query: 168  IPR-----NWSASPPGDRNILQQLQSLFLACAVYGVWRERNNRSHGMGTCTAELVSASIK 332
             P+      W+ +   DRNI    + LF A +VY +WRERN R H      A L+   I+
Sbjct: 1064 PPQFMHCLLWTLTASRDRNITLITKLLFHA-SVYFIWRERNLRIHSNSVRPAHLIIKEIQ 1122

Query: 333  NMVRDKV 353
             +VR ++
Sbjct: 1123 LIVRARL 1129


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
 Frame = +3

Query: 9   WLAYKRRLPTRDRLHRFGIPVQKNCLLCNSAHENTEHLFFQCPFSG------VVISGMPI 170
           W+A  +RL TRDRL ++G+ +   C+LCN   E  +HLFFQC FS       ++ +GM  
Sbjct: 172 WVAAWKRLHTRDRLTQWGLNIPTVCVLCNVVDETHDHLFFQCQFSNEIWSFFMIRAGMTP 231

Query: 171 PR------NWSASPPGDRNILQQLQSLFLACAVYGVWRERNNRSHGMGTCTAELVSASIK 332
           P        W  S    +N+   ++ LF A +VY +WRERN R H   + T   +   ++
Sbjct: 232 PHLFGPILLWLKSASSSKNLSLIIKLLFQA-SVYLIWRERNCRIHTTHSRTPPTIIKEVQ 290

Query: 333 NMVRDKV 353
            ++R ++
Sbjct: 291 QLIRARL 297