BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00021810
         (1053 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   317   4e-84
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   300   3e-79
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              299   7e-79
gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycope...   299   9e-79
gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum ma...   285   1e-74

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
            1-like [Vitis vinifera]
          Length = 1560

 Score =  317 bits (811), Expect = 4e-84
 Identities = 175/377 (46%), Positives = 238/377 (63%), Gaps = 30/377 (7%)
 Frame = +1

Query: 13   SIVEALSVKCNLLM-KLNIQLPELKITRNDC---LERDDAT-LCINIRIFGNNTNSDTHP 177
            SI++AL +KCN    +  I LP+L+IT  DC   +E++D+   CI + I  N+  S    
Sbjct: 1044 SIIDALYMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDCFCITVSIV-NSKKSCIQL 1102

Query: 178  ETLEDTVIPFLLKTIIKGSSNVKKVDIAWKDSSHLPTSNI----GGELYLRVFMSETCDR 345
            +T+ D VIPFLL  ++KG  +VKKVDI W D+   P S++     G LYLRV++S  C +
Sbjct: 1103 DTVRDLVIPFLLGAVVKGLLDVKKVDILWNDN---PDSDVLKSSSGRLYLRVYVSGDCGK 1159

Query: 346  SRFWTAIIDDCLPIMEMIDWEHSYPDDIQASTMALGIDFGRSLFLSKLATAMSDTGKGVL 525
              FW  ++D CL IM+MIDWE S+PD+I    +  GID G   FL+ L +A+SD GK VL
Sbjct: 1160 KNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVL 1219

Query: 526  PQHLFLVADCLSSTGEFVPLSANGLARQRKQTSVSSPFTQACFSSPADCFVNAAKNDVAD 705
            P+HL LVA CLS+TGEFV L+A G+ARQ++ TS+SSPF Q CFSSP  CF+ A K  VAD
Sbjct: 1220 PEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVAD 1279

Query: 706  NLQGSLDALAWGNSPSLGTGAQFDVLYSGKGHDLSKPEDIYNLLGSQVNAHGQKVKV--- 876
            NL GSLDALAWG  PS+G+G  FD+LYS KGH+L++PEDIY LLGSQ + H Q +KV   
Sbjct: 1280 NLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVP 1339

Query: 877  -----------------SREFSDMSIKSLAKRSEFLRKNFKE-SHFLCMSKELRHILYKY 1002
                             + + +    KSL K S+ + ++F   +    +S+ L+ IL KY
Sbjct: 1340 ITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKY 1399

Query: 1003 KINQQLSGLEEDLVKAA 1053
             IN QLS +++  +  A
Sbjct: 1400 PINHQLSEIDKTTLMMA 1416


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 1517

 Score =  300 bits (769), Expect = 3e-79
 Identities = 168/375 (44%), Positives = 227/375 (60%), Gaps = 29/375 (7%)
 Frame = +1

Query: 7    VQSIVEALSVKCNLLMKLNIQLPELKITRNDCLERDD-----ATLCINIRIFGNNTNSDT 171
            V  I++AL  +C    K   + P+++IT   C   D       T CI + I   + N   
Sbjct: 1057 VHYIIDALEKQC----KSKTRFPKVQITSRYCTVADTWKEKKETFCITVTIVETSKNEFI 1112

Query: 172  HPETLEDTVIPFLLKTIIKGSSNVKKVDIAWKDSSHLPTSN--IGGELYLRVFMSETCDR 345
              ET++D +IPFLL+T+IKG   ++KVDI W D   +P S+  + GEL+LRV MS   D+
Sbjct: 1113 ELETIQDLMIPFLLETVIKGFMEIQKVDILWNDKPKIPKSHNRLRGELFLRVHMSRGSDK 1172

Query: 346  SRFWTAIIDDCLPIMEMIDWEHSYPDDIQASTMALGIDFGRSLFLSKLATAMSDTGKGVL 525
            +R W  ++DDCL IM++IDW  S+PD+I    +A GID G   FL+ L +AMSD GK VL
Sbjct: 1173 TRLWNQLMDDCLSIMDLIDWARSHPDNIHECCLAYGIDAGWKFFLNNLQSAMSDVGKTVL 1232

Query: 526  PQHLFLVADCLSSTGEFVPLSANGLARQRKQTSVSSPFTQACFSSPADCFVNAAKNDVAD 705
            P+HL LVA+CLS TGEFV L+A GL RQR+  SVS+PF QACFS+P DCF+ AAK  V D
Sbjct: 1233 PEHLLLVANCLSVTGEFVGLNAKGLKRQREHASVSTPFVQACFSNPGDCFIRAAKAGVVD 1292

Query: 706  NLQGSLDALAWGNSPSLGTGAQFDVLYSGKGHDLSKPEDIYNLLGSQVNAHGQKV----- 870
            +LQGS+DALAWG  P++GTG QFD++YSGKG + SKP D+YNLLGSQ+ +  Q       
Sbjct: 1293 DLQGSIDALAWGKVPAIGTG-QFDIVYSGKGLEFSKPVDVYNLLGSQMISTEQNTEFGVL 1351

Query: 871  --------KVSREF---------SDMSIKSLAKRSEFLRKNFKESHFLCMSKELRHILYK 999
                    K   +F             +K    RS FLR+         MS  +R IL K
Sbjct: 1352 DAQIYKSDKCGAQFLHKFGGCGPKGFKVKEGIPRS-FLRRLLTYDDIQRMSYTVRKILNK 1410

Query: 1000 YKINQQLSGLEEDLV 1044
            Y ++QQL+  ++ ++
Sbjct: 1411 YSVDQQLNESDKSVL 1425


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  299 bits (766), Expect = 7e-79
 Identities = 170/373 (45%), Positives = 231/373 (61%), Gaps = 26/373 (6%)
 Frame = +1

Query: 13   SIVEALSVKCNLLM-KLNIQLPELKITRNDC---LERDDAT-LCINIRIFGNNTNSDTHP 177
            SI++AL +KCN    +  I LP+L+IT  DC   +E++D+   CI + I  N+  S    
Sbjct: 913  SIIDALYMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDCFCITVSIV-NSKKSCIQL 971

Query: 178  ETLEDTVIPFLLKTIIKGSSNVKKVDIAWKDSSHLPTSNIGGELYLRVFMSETCDRSRFW 357
            +T+ D VIPFLL  ++KG   +K  D+  K SS        G LYLRV++S  C +  FW
Sbjct: 972  DTVRDLVIPFLLGAVVKGCC-IKNSDVL-KSSS--------GRLYLRVYVSGDCGKKNFW 1021

Query: 358  TAIIDDCLPIMEMIDWEHSYPDDIQASTMALGIDFGRSLFLSKLATAMSDTGKGVLPQHL 537
              ++D CL IM+MIDWE S+PD+I    +  GID G   FL+ L +A+SD GK VLP+HL
Sbjct: 1022 GVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHL 1081

Query: 538  FLVADCLSSTGEFVPLSANGLARQRKQTSVSSPFTQACFSSPADCFVNAAKNDVADNLQG 717
             LVA CLS+TGEFV L+A G+ARQ++ TS+SSPF Q CFSSP  CF+ A K  VADNL G
Sbjct: 1082 LLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHG 1141

Query: 718  SLDALAWGNSPSLGTGAQFDVLYSGKGHDLSKPEDIYNLLGSQVNAHGQKVKV------- 876
            SLDALAWG  PS+G+G  FD+LYS KGH+L++PEDIY LLGSQ + H Q +KV       
Sbjct: 1142 SLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCY 1201

Query: 877  -------------SREFSDMSIKSLAKRSEFLRKNFKE-SHFLCMSKELRHILYKYKINQ 1014
                         + + +    KSL K S+ + ++F   +    +S+ L+ IL KY IN 
Sbjct: 1202 QTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINH 1261

Query: 1015 QLSGLEEDLVKAA 1053
            QLS +++  +  A
Sbjct: 1262 QLSEIDKTTLMMA 1274


>gb|AAY89360.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1138

 Score =  299 bits (765), Expect = 9e-79
 Identities = 162/374 (43%), Positives = 233/374 (62%), Gaps = 25/374 (6%)
 Frame = +1

Query: 7    VQSIVEALSVKCNLLM-KLNIQLPELKITRNDC----LERDDATLCINIRIFGNNTNSDT 171
            ++S+++AL+++      K    LP L IT  DC    ++++ + +CI + +   + +  +
Sbjct: 691  LRSVLDALNMRYRAATTKAGNDLPNLHITCKDCSVAEVQKEKSEICITVSVVETSKDPSS 750

Query: 172  HPETLEDTVIPFLLKTIIKGSSNVKKVDIAWKDSSHLPTSNIG--GELYLRVFMSETCDR 345
              +TL D VIPFLL+T+IKG S  KKVDI WK+      S+ G  GELYL+VFMSE+CDR
Sbjct: 751  LLDTLRDVVIPFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDR 810

Query: 346  SRFWTAIIDDCLPIMEMIDWEHSYPDDIQASTMALGIDFGRSLFLSKLATAMSDTGKGVL 525
             +FW A++D CL I ++IDWE SYPDD+   T+A GID     FL KL +A+S+TGK +L
Sbjct: 811  IKFWNALVDSCLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKIL 870

Query: 526  PQHLFLVADCLSSTGEFVPLSANGLARQRKQTSVSSPFTQACFSSPADCFVNAAKNDVAD 705
            P+HL L AD L++TGEFVPLSA GL  QRK   V SPF QACF++P D FV AAK  ++D
Sbjct: 871  PEHLVLAADSLTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSD 930

Query: 706  NLQGSLDALAWGNSPSLGTGAQFDVLYSGKGHDLSKPEDIYNLLGSQVNAHGQKVKVS-- 879
            +LQGSL++LAWG +PS+GTG+ FD++YSGKG++L++  ++Y LL + V      VKV+  
Sbjct: 931  DLQGSLESLAWGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLLRNLVTVDTPNVKVTLG 990

Query: 880  --------------REFSDMSIKSLAKRSEF--LRKNFKESHFLCMSKELRHILYKYKIN 1011
                              D+  KS      F  LR  F  +    +S+ L+ +L KY I 
Sbjct: 991  KDGGMDGMSLVRRLDRLDDLDKKSCKSELSFTKLRSYFSFNDIKKLSQSLKQMLSKYDIG 1050

Query: 1012 QQLSGLEEDLVKAA 1053
            ++L+  ++ L   A
Sbjct: 1051 RELNEADKCLAMMA 1064


>gb|AAY89361.1| RNA polymerase IV largest subunit [Antirrhinum majus]
          Length = 1112

 Score =  285 bits (730), Expect = 1e-74
 Identities = 157/376 (41%), Positives = 229/376 (60%), Gaps = 27/376 (7%)
 Frame = +1

Query: 7    VQSIVEALSVKCNLL-MKLNIQLPELKITRNDCLE----RDDATLCINIRIFGNNTNSDT 171
            ++S+V  L   CN    K+ ++LP L I   DC E     D + +CI++ +   N  S+ 
Sbjct: 679  LESVVHTLRANCNATPKKMKLKLPNLLIENKDCSEADFHEDSSRICISVAV-SQNELSNL 737

Query: 172  HPETLED---------TVIPFLLKTIIKGSSNVKKVDIAWKDSSHLPTSN--IGGELYLR 318
            H  +L++          VIP LL+T++KG    KKVDI WKD       +    GE Y+R
Sbjct: 738  HFGSLKEYEILDYLRNMVIPVLLRTVVKGFPEFKKVDILWKDEQSRSRFSKCSSGEPYVR 797

Query: 319  VFMSETCDRSRFWTAIIDDCLPIMEMIDWEHSYPDDIQASTMALGIDFGRSLFLSKLATA 498
            VFMSE C+R+RFW  +++  L I  +IDW+ S+PDD+     A GID     F++ L +A
Sbjct: 798  VFMSENCERARFWNILVEKSLRIRSLIDWDRSHPDDVHDYGEAFGIDTAWMCFVNSLNSA 857

Query: 499  MSDTGKGVLPQHLFLVADCLSSTGEFVPLSANGLARQRKQTSVSSPFTQACFSSPADCFV 678
            +S+TGK +LP+HL   A+CLS TGEFV L+A GLA+QRK+ +++SPF QACFS+P+DCF+
Sbjct: 858  ISETGKTILPEHLIATANCLSMTGEFVSLNAKGLAQQRKEATINSPFVQACFSNPSDCFI 917

Query: 679  NAAKNDVADNLQGSLDALAWGNSPSLGTGAQFDVLYSGKGHDLSKPEDIYNLLGSQVN-- 852
             AAK    DNLQGS+D+LAWG +P +GTG QFD++YSGKGH+ SKP D+Y+LL SQV   
Sbjct: 918  KAAKMGQMDNLQGSVDSLAWGQTPPIGTGGQFDIIYSGKGHEPSKPTDVYSLLNSQVGFA 977

Query: 853  AHGQKVKVSREFSDMSIKSLAKRSEFLRKNF---------KESHFLCMSKELRHILYKYK 1005
               +K+K+  +F+  + +S   ++   RK F          E     +S  L+ +L++Y 
Sbjct: 978  KPSEKIKLPVQFTSGNDQSQNLKTNG-RKRFLAGMKSLRSAEDEIREVSLALKRMLHEYA 1036

Query: 1006 INQQLSGLEEDLVKAA 1053
             + QL G ++ L   A
Sbjct: 1037 SDCQLRGEDKTLALRA 1052