BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00021765
         (1401 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318395.1| predicted protein [Populus trichocarpa] gi|2...   112   6e-60
ref|XP_002893824.1| hypothetical protein ARALYDRAFT_891051 [Arab...   128   5e-59
ref|XP_002337129.1| predicted protein [Populus trichocarpa] gi|2...   112   7e-49
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]...    94   2e-47
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain...    93   3e-47

>ref|XP_002318395.1| predicted protein [Populus trichocarpa] gi|222859068|gb|EEE96615.1|
            predicted protein [Populus trichocarpa]
          Length = 1497

 Score =  112 bits (279), Expect(3) = 6e-60
 Identities = 54/85 (63%), Positives = 67/85 (78%)
 Frame = +2

Query: 908  CITIVQTTLNAGTVFITLFPNLNLRLDDPLIYNNLKVQLQIVGSPQVAGTYKATLHYQMA 1087
            CI  +QTTLN GTV +T +PN N+ LDDP ++N LKVQLQI G+ QV  TY+ATLHYQMA
Sbjct: 175  CIGSLQTTLNCGTVVVTFYPNFNMALDDPQLHNFLKVQLQITGADQVLDTYQATLHYQMA 234

Query: 1088 YRVQNHSFDLSLPRDTDEALFLEID 1162
            YRVQNH+FDL LP  T++AL + +D
Sbjct: 235  YRVQNHAFDLVLP-VTNDALLITVD 258



 Score = 96.3 bits (238), Expect(3) = 6e-60
 Identities = 52/121 (42%), Positives = 72/121 (59%)
 Frame = +3

Query: 525 HSVDYHNDDNKISITELHLLNPYKTFTKKHNPVSRVVKHVLTSSK*VEAKEIVLASRLEQ 704
           + V   +D  KIS T+L L+NPY  FTKK   V R +K ++     V AKE V AS  +Q
Sbjct: 41  YEVSLLDDTQKISETDLPLVNPYHAFTKKSPSVIRSIKTLIKQPSRV-AKEYVQASSFDQ 99

Query: 705 VPIPSSEAEQVIPILLSEFLPEQWRQQGFTHLHSGAVRMTLTLHGRIGLQVVTRMTILDT 884
             IP++  EQ + + +    P QW  QG+TH+H  A+R+ L+ HGR GL V  R+ +LDT
Sbjct: 100 HKIPATSREQFVTLEIPTEFPGQWISQGYTHIHFCAIRLALSYHGRKGLPVAARLALLDT 159

Query: 885 R 887
           R
Sbjct: 160 R 160



 Score = 72.0 bits (175), Expect(3) = 6e-60
 Identities = 31/58 (53%), Positives = 42/58 (72%)
 Frame = +1

Query: 1180 CIHVPKQIPKNELVKLLPESWITHYEKIQRGNSPIHFFKSSFFRKKDGAVEIVFKKDD 1353
            C HVP+QIPK +L KLLP SWIT+Y+K+ + + PI   +  F +K DG VEI+FKK +
Sbjct: 265  CTHVPRQIPKEDLQKLLPSSWITNYKKLHQSSIPIQSTEPEFTKKVDGTVEIIFKKGE 322


>ref|XP_002893824.1| hypothetical protein ARALYDRAFT_891051 [Arabidopsis lyrata subsp.
            lyrata] gi|297339666|gb|EFH70083.1| hypothetical protein
            ARALYDRAFT_891051 [Arabidopsis lyrata subsp. lyrata]
          Length = 291

 Score =  128 bits (321), Expect(2) = 5e-59
 Identities = 65/141 (46%), Positives = 88/141 (62%)
 Frame = +2

Query: 905  TCITIVQTTLNAGTVFITLFPNLNLRLDDPLIYNNLKVQLQIVGSPQVAGTYKATLHYQM 1084
            T I  +QTTLNA T+F+TLFPN N+ L+DP IY N+++QLQI G+PQV  TY ATLH+QM
Sbjct: 151  TYIATIQTTLNASTIFVTLFPNFNVVLEDPQIYQNMQIQLQITGAPQVRNTYAATLHHQM 210

Query: 1085 AYRVQNHSFDLSLPRDTDEALFLEIDAQSVHSAYMFQNRFQKMSLLSCFQSHGSLIMRRY 1264
            AYRVQNHS DLSLP DT++AL +++++Q   S      +  +  L+          MR  
Sbjct: 211  AYRVQNHSMDLSLPSDTEDALLIQLESQYSPSCIHIPRQIPREELVKLLPESWVTTMRNS 270

Query: 1265 KGVILQSTFSNHLSSERKMEQ 1327
               + Q      L +E K E+
Sbjct: 271  MIEVFQYNRWTLLFTEEKTEK 291



 Score =  127 bits (320), Expect(2) = 5e-59
 Identities = 62/124 (50%), Positives = 92/124 (74%)
 Frame = +3

Query: 516 NNEHSVDYHNDDNKISITELHLLNPYKTFTKKHNPVSRVVKHVLTSSK*VEAKEIVLASR 695
           +N + V+Y +D++K+ IT+L LLNPYK FTK ++   +V+K+V    K   A+E+VLAS+
Sbjct: 22  DNLYEVEYVSDESKVPITQLSLLNPYKAFTKSNSTFPKVIKYVFGPHKHA-ARELVLASQ 80

Query: 696 LEQVPIPSSEAEQVIPILLSEFLPEQWRQQGFTHLHSGAVRMTLTLHGRIGLQVVTRMTI 875
           LEQ  +P++E EQ+IP+ L+E +  QWR  G+THLH GA+R+ LTL+GR GL +V R+ +
Sbjct: 81  LEQHLVPTTETEQMIPLRLNEGMIHQWRAYGYTHLHYGAIRVALTLYGRKGLPIVVRVAL 140

Query: 876 LDTR 887
           LDTR
Sbjct: 141 LDTR 144


>ref|XP_002337129.1| predicted protein [Populus trichocarpa] gi|222838330|gb|EEE76695.1|
            predicted protein [Populus trichocarpa]
          Length = 284

 Score =  112 bits (279), Expect(3) = 7e-49
 Identities = 54/85 (63%), Positives = 67/85 (78%)
 Frame = +2

Query: 908  CITIVQTTLNAGTVFITLFPNLNLRLDDPLIYNNLKVQLQIVGSPQVAGTYKATLHYQMA 1087
            CI  +QTTLN GTV +T +PN N+ LDDP ++N LKVQLQI G+ QV  TY+ATLHYQMA
Sbjct: 175  CIGSLQTTLNCGTVVVTFYPNFNMALDDPQLHNFLKVQLQITGADQVLDTYQATLHYQMA 234

Query: 1088 YRVQNHSFDLSLPRDTDEALFLEID 1162
            YRVQNH+FDL LP  T++AL + +D
Sbjct: 235  YRVQNHAFDLVLP-ITNDALLITVD 258



 Score = 96.3 bits (238), Expect(3) = 7e-49
 Identities = 52/121 (42%), Positives = 72/121 (59%)
 Frame = +3

Query: 525 HSVDYHNDDNKISITELHLLNPYKTFTKKHNPVSRVVKHVLTSSK*VEAKEIVLASRLEQ 704
           + V   +D  KIS T+L L+NPY TFTKK   V R +K ++     V AKE V AS  +Q
Sbjct: 41  YEVSLLDDTQKISETDLPLVNPYHTFTKKSPSVIRSIKTLIKQPSRV-AKEYVQASSFDQ 99

Query: 705 VPIPSSEAEQVIPILLSEFLPEQWRQQGFTHLHSGAVRMTLTLHGRIGLQVVTRMTILDT 884
             IP++  E  + + +    P QW  QG+TH+H  A+R+ L+ HGR GL V  R+ +LDT
Sbjct: 100 HKIPATSREHFVTLEIPTEFPGQWISQGYTHIHFCAIRLALSYHGRKGLPVAARLALLDT 159

Query: 885 R 887
           R
Sbjct: 160 R 160



 Score = 34.7 bits (78), Expect(3) = 7e-49
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +1

Query: 1180 CIHVPKQIPKNELVKLLPES 1239
            C HVP+QIPK +L KLLP S
Sbjct: 265  CTHVPRQIPKEDLQKLLPSS 284


>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
            gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
            polyprotein; Contains: RecName: Full=Movement protein;
            Short=MP; Contains: RecName: Full=Capsid protein;
            Short=CP; Contains: RecName: Full=Aspartic protease;
            Short=PR; Contains: RecName: Full=Reverse transcriptase;
            Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
            [petunia vein clearing virus]
          Length = 2179

 Score = 94.0 bits (232), Expect(3) = 2e-47
 Identities = 48/83 (57%), Positives = 62/83 (74%)
 Frame = +2

Query: 923  QTTLNAGTVFITLFPNLNLRLDDPLIYNNLKVQLQIVGSPQVAGTYKATLHYQMAYRVQN 1102
            + TLNAGTVFITLFPN  + L D  +   LK+Q+QI G+P    + +ATLHYQ+A+RVQN
Sbjct: 167  EITLNAGTVFITLFPNFTMSLSDANLSTALKIQVQIQGAPLTKDSIQATLHYQIAWRVQN 226

Query: 1103 HSFDLSLPRDTDEALFLEIDAQS 1171
            H+ DL+LP   +EALFL+IDA S
Sbjct: 227  HAMDLTLP-GGEEALFLKIDAGS 248



 Score = 90.5 bits (223), Expect(3) = 2e-47
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
 Frame = +3

Query: 525 HSVDYHNDDNKISITELHLLNPYKTFTKKH-NPVSRVVKHVLTSSK*VEAKEIVLASRLE 701
           + VD   ++ KIS T L LLNPY  F K+   P S++    L  SK    KE V AS+L+
Sbjct: 35  YEVDILKENQKISDTYLPLLNPYSAFAKRSVTPWSQI--RSLVQSKPRHVKEYVAASKLD 92

Query: 702 QVPIPSSEAEQVIPILLSEFLPEQWRQQGFTHLHSGAVRMTLTLHGRIGLQVVTRMTILD 881
           Q P+ ++  EQ + + + E     W+   FTH+H GAV++ LT HGR G  VV R+ +LD
Sbjct: 93  QHPVFATGEEQFVTLHIPEEFASHWKSHQFTHIHFGAVKIALTYHGRKGQPVVARLALLD 152

Query: 882 TR 887
           TR
Sbjct: 153 TR 154



 Score = 53.9 bits (128), Expect(3) = 2e-47
 Identities = 21/54 (38%), Positives = 36/54 (66%)
 Frame = +1

Query: 1180 CIHVPKQIPKNELVKLLPESWITHYEKIQRGNSPIHFFKSSFFRKKDGAVEIVF 1341
            C  VP+Q+ K +L+K+LP+SW+T+YEK++    P+   + S  ++ D +V I F
Sbjct: 253  CTQVPRQLSKEDLIKILPDSWVTNYEKLREPEEPLRSTEVSMSKRHDKSVAISF 306


>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
            protein; Short=MP; Contains: RecName: Full=Capsid
            protein; Short=CP; Contains: RecName: Full=Aspartic
            protease; Short=PR; Contains: RecName: Full=Reverse
            transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
            polyprotein 1 [Petunia vein clearing virus]
          Length = 2180

 Score = 93.2 bits (230), Expect(3) = 3e-47
 Identities = 47/81 (58%), Positives = 61/81 (75%)
 Frame = +2

Query: 923  QTTLNAGTVFITLFPNLNLRLDDPLIYNNLKVQLQIVGSPQVAGTYKATLHYQMAYRVQN 1102
            + TLNAGTVFITLFPN  + L D  +   LK+Q+QI G+P    + +ATLHYQ+A+RVQN
Sbjct: 168  EITLNAGTVFITLFPNFTMSLSDANLSTALKIQVQIQGAPLTKDSIQATLHYQIAWRVQN 227

Query: 1103 HSFDLSLPRDTDEALFLEIDA 1165
            H+ DL+LP   +EALFL+IDA
Sbjct: 228  HAMDLTLP-GGEEALFLKIDA 247



 Score = 90.5 bits (223), Expect(3) = 3e-47
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
 Frame = +3

Query: 525 HSVDYHNDDNKISITELHLLNPYKTFTKKH-NPVSRVVKHVLTSSK*VEAKEIVLASRLE 701
           + VD   ++ KIS T L LLNPY  F K+   P S++    L  SK    KE V AS+L+
Sbjct: 36  YEVDILKENQKISDTYLPLLNPYSAFAKRSVTPWSQI--RSLVQSKPRHVKEYVAASKLD 93

Query: 702 QVPIPSSEAEQVIPILLSEFLPEQWRQQGFTHLHSGAVRMTLTLHGRIGLQVVTRMTILD 881
           Q P+ ++  EQ + + + E     W+   FTH+H GAV++ LT HGR G  VV R+ +LD
Sbjct: 94  QHPVFATGEEQFVTLHIPEEFASHWKSHQFTHIHFGAVKIALTYHGRKGQPVVARLALLD 153

Query: 882 TR 887
           TR
Sbjct: 154 TR 155



 Score = 53.9 bits (128), Expect(3) = 3e-47
 Identities = 21/54 (38%), Positives = 36/54 (66%)
 Frame = +1

Query: 1180 CIHVPKQIPKNELVKLLPESWITHYEKIQRGNSPIHFFKSSFFRKKDGAVEIVF 1341
            C  VP+Q+ K +L+K+LP+SW+T+YEK++    P+   + S  ++ D +V I F
Sbjct: 254  CTQVPRQLSKEDLIKILPDSWVTNYEKLKEPEEPLRSTEVSMSKRHDKSVAISF 307