BLASTX nr result

ID: Bupleurum21_contig00021686 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00021686
         (293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004147091.1| PREDICTED: F-box/LRR-repeat protein At4g2942...    59   3e-07
ref|NP_194671.1| F-box/LRR-repeat protein [Arabidopsis thaliana]...    55   8e-06
dbj|BAC42265.1| unknown protein [Arabidopsis thaliana]                 55   8e-06

>ref|XP_004147091.1| PREDICTED: F-box/LRR-repeat protein At4g29420-like [Cucumis
           sativus] gi|449503313|ref|XP_004161940.1| PREDICTED:
           F-box/LRR-repeat protein At4g29420-like [Cucumis
           sativus]
          Length = 449

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 37/97 (38%), Positives = 52/97 (53%)
 Frame = -3

Query: 291 LNIFDDNGIIEPKIHHLNLKEFKYTQIKRERHYLLTSMTITAPNLAKLDLQCVEAVPLVI 112
           LN+    G+ EPKI  L+LK  K+T           S+ I AP+L+KL+L+CV+   L+I
Sbjct: 206 LNLIGVGGLNEPKIRLLHLKTCKWTVSNAP-----VSLCIYAPSLSKLELKCVKPKFLII 260

Query: 111 HAPLLSYFHLAIECEDQCIGFDADSYNIDEFKSLKTL 1
             P+LS FH  +E        DA    +DEF  L+ L
Sbjct: 261 ETPMLSDFHFCLE--------DASGLQVDEFPCLRKL 289


>ref|NP_194671.1| F-box/LRR-repeat protein [Arabidopsis thaliana]
           gi|75264516|sp|Q9M0E1.1|FBL77_ARATH RecName:
           Full=F-box/LRR-repeat protein At4g29420
           gi|7269841|emb|CAB79700.1| hypothetical protein
           [Arabidopsis thaliana] gi|109946621|gb|ABG48489.1|
           At4g29420 [Arabidopsis thaliana]
           gi|332660229|gb|AEE85629.1| F-box/LRR-repeat protein
           [Arabidopsis thaliana]
          Length = 446

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 34/97 (35%), Positives = 50/97 (51%)
 Frame = -3

Query: 291 LNIFDDNGIIEPKIHHLNLKEFKYTQIKRERHYLLTSMTITAPNLAKLDLQCVEAVPLVI 112
           LN+    G+ EP+IH L+LK   +T           S+ I APNL +L L+C +   L++
Sbjct: 202 LNLIGVGGLKEPRIHFLHLKSCHWTVSNAP-----LSLAIVAPNLLELKLKCNKPKSLLV 256

Query: 111 HAPLLSYFHLAIECEDQCIGFDADSYNIDEFKSLKTL 1
             P L   HL++E        DA+  +  EF+ LKTL
Sbjct: 257 ETPKLVQCHLSVE--------DAEGVSFGEFQDLKTL 285


>dbj|BAC42265.1| unknown protein [Arabidopsis thaliana]
          Length = 446

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 34/97 (35%), Positives = 50/97 (51%)
 Frame = -3

Query: 291 LNIFDDNGIIEPKIHHLNLKEFKYTQIKRERHYLLTSMTITAPNLAKLDLQCVEAVPLVI 112
           LN+    G+ EP+IH L+LK   +T           S+ I APNL +L L+C +   L++
Sbjct: 202 LNLIGVGGLKEPRIHFLHLKSCHWTVSNAP-----LSLAIVAPNLLELKLKCNKPKSLLV 256

Query: 111 HAPLLSYFHLAIECEDQCIGFDADSYNIDEFKSLKTL 1
             P L   HL++E        DA+  +  EF+ LKTL
Sbjct: 257 ETPKLVQCHLSVE--------DAEGVSFGEFQDLKTL 285


Top