BLASTX nr result

ID: Bupleurum21_contig00021578 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00021578
         (843 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305338.1| predicted protein [Populus trichocarpa] gi|2...   432   e-119
ref|XP_002519696.1| RNA binding protein, putative [Ricinus commu...   427   e-117
ref|XP_002269568.1| PREDICTED: uncharacterized mitochondrial pro...   413   e-113
ref|XP_004165625.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   412   e-113
ref|XP_004147417.1| PREDICTED: uncharacterized mitochondrial pro...   412   e-113

>ref|XP_002305338.1| predicted protein [Populus trichocarpa] gi|222848302|gb|EEE85849.1|
            predicted protein [Populus trichocarpa]
          Length = 623

 Score =  432 bits (1110), Expect = e-119
 Identities = 208/281 (74%), Positives = 235/281 (83%)
 Frame = -1

Query: 843  VVMRFVENVVKDKKVLRLIKSGLRVSSGMQCAHXXXXXXXXXXXXXXXXXXXXXKILNEN 664
            VVM  VE VV+DKKVL LIK  L+    ++                        KILNEN
Sbjct: 189  VVMGCVEKVVRDKKVLNLIKKALKSPVRIR----EMGNYGEESRKKKKRKSTKKKILNEN 244

Query: 663  EPKPDPYWLRTFFDFAPEEAAKVPSYGYCGILSPLLANICLNELDQMMEDKLVKFFRPSR 484
            EPKPDPYWLRTFFDFAPEEAAK+P+YGYCGILSPLLAN+CLNELDQMME+K+V FFRP++
Sbjct: 245  EPKPDPYWLRTFFDFAPEEAAKIPTYGYCGILSPLLANVCLNELDQMMEEKIVDFFRPNK 304

Query: 483  LDSIWKDSVDDGSHNPSWPEFVPASGKEKTRKMDYIRFGGHFLVGIRGPREDAVQTRIDM 304
            LDSIWK S+DD  HNPSWPEFVP+SGKEKTRKM+YIR+GGHFL+G+RGPREDAVQ R ++
Sbjct: 305  LDSIWKHSIDDRCHNPSWPEFVPSSGKEKTRKMEYIRYGGHFLIGVRGPREDAVQIRKEI 364

Query: 303  IEFCESKFGIRLDNSKLEIEHVTRGVEFLDHIISRRVIYPTLRYTATGGNIVNEKGVGTL 124
            IEFCE KFGIRLDNSK++IEH+TRG++FLDHII RRVIYPTLRYT +GG IV+EKGVGTL
Sbjct: 365  IEFCERKFGIRLDNSKIDIEHITRGIQFLDHIICRRVIYPTLRYTGSGGKIVSEKGVGTL 424

Query: 123  LSVTASLQQCIRQFRRLKFVMGDRDPEPLPCTPMLYSGQAH 1
            LSVTA LQQCIRQFRRLKFV GD+DPEPLPCTPMLYSGQAH
Sbjct: 425  LSVTACLQQCIRQFRRLKFVKGDKDPEPLPCTPMLYSGQAH 465


>ref|XP_002519696.1| RNA binding protein, putative [Ricinus communis]
            gi|223541113|gb|EEF42669.1| RNA binding protein, putative
            [Ricinus communis]
          Length = 681

 Score =  427 bits (1099), Expect = e-117
 Identities = 203/280 (72%), Positives = 234/280 (83%)
 Frame = -1

Query: 840  VMRFVENVVKDKKVLRLIKSGLRVSSGMQCAHXXXXXXXXXXXXXXXXXXXXXKILNENE 661
            V+  VE VVKDKKVL L+K  L+  S M+                        +ILNENE
Sbjct: 220  VLECVEKVVKDKKVLNLVKDALK--SPMRNQELEKRSDRKELRKKKKKKATKKRILNENE 277

Query: 660  PKPDPYWLRTFFDFAPEEAAKVPSYGYCGILSPLLANICLNELDQMMEDKLVKFFRPSRL 481
            PKPDPYWLRTFFDFAPEEA  +P+YGYCGILSPLLANICLNELDQ+ME+K+VKFFRP++ 
Sbjct: 278  PKPDPYWLRTFFDFAPEEAVNIPNYGYCGILSPLLANICLNELDQIMEEKIVKFFRPNKS 337

Query: 480  DSIWKDSVDDGSHNPSWPEFVPASGKEKTRKMDYIRFGGHFLVGIRGPREDAVQTRIDMI 301
            DSIWKDS+DDG HNPSWPEFVP+SGKEKTRK+DYIR+GGHFL+G+RGPREDAVQT+ ++I
Sbjct: 338  DSIWKDSIDDGCHNPSWPEFVPSSGKEKTRKIDYIRYGGHFLIGVRGPREDAVQTQKEII 397

Query: 300  EFCESKFGIRLDNSKLEIEHVTRGVEFLDHIISRRVIYPTLRYTATGGNIVNEKGVGTLL 121
            EFCE+K GIRLDNSK+EIEH++RG++FLDHII RRVI+PTL YTA+GG IV+EKGVGTLL
Sbjct: 398  EFCENKLGIRLDNSKIEIEHISRGIQFLDHIICRRVIHPTLHYTASGGKIVSEKGVGTLL 457

Query: 120  SVTASLQQCIRQFRRLKFVMGDRDPEPLPCTPMLYSGQAH 1
            SVTASLQQCIRQFRRL FV GD+DPEPLPC PMLYS QAH
Sbjct: 458  SVTASLQQCIRQFRRLAFVKGDKDPEPLPCNPMLYSSQAH 497


>ref|XP_002269568.1| PREDICTED: uncharacterized mitochondrial protein ymf11-like [Vitis
            vinifera]
          Length = 689

 Score =  413 bits (1061), Expect = e-113
 Identities = 201/281 (71%), Positives = 232/281 (82%)
 Frame = -1

Query: 843  VVMRFVENVVKDKKVLRLIKSGLRVSSGMQCAHXXXXXXXXXXXXXXXXXXXXXKILNEN 664
            VVM ++E  VKDKKVL LIK  L      Q AH                      ILNEN
Sbjct: 227  VVMGYLEKYVKDKKVLGLIKLALGARVRNQ-AHGGDCDVTFGKKKKKKGPKKKK-ILNEN 284

Query: 663  EPKPDPYWLRTFFDFAPEEAAKVPSYGYCGILSPLLANICLNELDQMMEDKLVKFFRPSR 484
            EPKPDP+WLR+FF FAPEEAAKVPSYG+CGILSPLLAN+CL+ELD MME+K++KFFRPS+
Sbjct: 285  EPKPDPFWLRSFFSFAPEEAAKVPSYGHCGILSPLLANVCLSELDYMMEEKIIKFFRPSK 344

Query: 483  LDSIWKDSVDDGSHNPSWPEFVPASGKEKTRKMDYIRFGGHFLVGIRGPREDAVQTRIDM 304
            LDSIW+DS++DGSHNP+WPEFVP+S +EKTRKMDYIR+GGHFL+GIRGPRE+AVQ R ++
Sbjct: 345  LDSIWRDSINDGSHNPAWPEFVPSSDREKTRKMDYIRYGGHFLIGIRGPREEAVQIRKEI 404

Query: 303  IEFCESKFGIRLDNSKLEIEHVTRGVEFLDHIISRRVIYPTLRYTATGGNIVNEKGVGTL 124
             EFCESK+ ++LDNSK+EIEH++RG+ FLDHII RRVI+PTLRYT TGG IV+EKGVGTL
Sbjct: 405  TEFCESKYWLKLDNSKVEIEHISRGILFLDHIICRRVIHPTLRYTGTGGKIVSEKGVGTL 464

Query: 123  LSVTASLQQCIRQFRRLKFVMGDRDPEPLPCTPMLYSGQAH 1
            LSVTASLQQCIRQFRRL FV GDRDPEPLPCTPMLYS QAH
Sbjct: 465  LSVTASLQQCIRQFRRLGFVKGDRDPEPLPCTPMLYSSQAH 505


>ref|XP_004165625.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized mitochondrial protein
            ymf11-like [Cucumis sativus]
          Length = 697

 Score =  412 bits (1060), Expect = e-113
 Identities = 200/281 (71%), Positives = 233/281 (82%)
 Frame = -1

Query: 843  VVMRFVENVVKDKKVLRLIKSGLRVSSGMQCAHXXXXXXXXXXXXXXXXXXXXXKILNEN 664
            VVM  +E  VKDKK+LRL+KS L+  S  +                        KILNEN
Sbjct: 243  VVMGSLEKAVKDKKILRLVKSALQ--SPRKTRPRVEDNEEMMKKKKNKGAMKKKKILNEN 300

Query: 663  EPKPDPYWLRTFFDFAPEEAAKVPSYGYCGILSPLLANICLNELDQMMEDKLVKFFRPSR 484
            EPKPDPYWLRTFF+FAPEEAAKVPSYG+CGILSPLLANICL+ELD +MEDK+V++FRPS+
Sbjct: 301  EPKPDPYWLRTFFNFAPEEAAKVPSYGHCGILSPLLANICLHELDLVMEDKIVEYFRPSK 360

Query: 483  LDSIWKDSVDDGSHNPSWPEFVPASGKEKTRKMDYIRFGGHFLVGIRGPREDAVQTRIDM 304
            LDSIWKDS++DG HNP+WPEFVPASGKEKTRKMDYIR+GGHFLVGIRGPREDAV+ R ++
Sbjct: 361  LDSIWKDSINDGCHNPAWPEFVPASGKEKTRKMDYIRYGGHFLVGIRGPREDAVRIRKEI 420

Query: 303  IEFCESKFGIRLDNSKLEIEHVTRGVEFLDHIISRRVIYPTLRYTATGGNIVNEKGVGTL 124
            IE CE+ FGIRLDNSK+EIEH++RG+ FLDHII RR+IYPTLRYT++GG IV++K VGTL
Sbjct: 421  IELCENMFGIRLDNSKIEIEHISRGILFLDHIICRRIIYPTLRYTSSGGTIVSQKCVGTL 480

Query: 123  LSVTASLQQCIRQFRRLKFVMGDRDPEPLPCTPMLYSGQAH 1
            LSVTASLQ+CIR+FRR+  V GDRDPEPLPC PMLYS QAH
Sbjct: 481  LSVTASLQECIRKFRRVDLVKGDRDPEPLPCNPMLYSSQAH 521


>ref|XP_004147417.1| PREDICTED: uncharacterized mitochondrial protein ymf11-like [Cucumis
            sativus]
          Length = 697

 Score =  412 bits (1060), Expect = e-113
 Identities = 200/281 (71%), Positives = 233/281 (82%)
 Frame = -1

Query: 843  VVMRFVENVVKDKKVLRLIKSGLRVSSGMQCAHXXXXXXXXXXXXXXXXXXXXXKILNEN 664
            VVM  +E  VKDKK+LRL+KS L+  S  +                        KILNEN
Sbjct: 243  VVMGSLEKAVKDKKILRLVKSALQ--SPRKTRPRVEDNEEMMKKKKNKGAMKKKKILNEN 300

Query: 663  EPKPDPYWLRTFFDFAPEEAAKVPSYGYCGILSPLLANICLNELDQMMEDKLVKFFRPSR 484
            EPKPDPYWLRTFF+FAPEEAAKVPSYG+CGILSPLLANICL+ELD +MEDK+V++FRPS+
Sbjct: 301  EPKPDPYWLRTFFNFAPEEAAKVPSYGHCGILSPLLANICLHELDLVMEDKIVEYFRPSK 360

Query: 483  LDSIWKDSVDDGSHNPSWPEFVPASGKEKTRKMDYIRFGGHFLVGIRGPREDAVQTRIDM 304
            LDSIWKDS++DG HNP+WPEFVPASGKEKTRKMDYIR+GGHFLVGIRGPREDAV+ R ++
Sbjct: 361  LDSIWKDSINDGCHNPAWPEFVPASGKEKTRKMDYIRYGGHFLVGIRGPREDAVRIRKEI 420

Query: 303  IEFCESKFGIRLDNSKLEIEHVTRGVEFLDHIISRRVIYPTLRYTATGGNIVNEKGVGTL 124
            IE CE+ FGIRLDNSK+EIEH++RG+ FLDHII RR+IYPTLRYT++GG IV++K VGTL
Sbjct: 421  IELCENMFGIRLDNSKIEIEHISRGILFLDHIICRRIIYPTLRYTSSGGTIVSQKCVGTL 480

Query: 123  LSVTASLQQCIRQFRRLKFVMGDRDPEPLPCTPMLYSGQAH 1
            LSVTASLQ+CIR+FRR+  V GDRDPEPLPC PMLYS QAH
Sbjct: 481  LSVTASLQECIRKFRRVDLVKGDRDPEPLPCNPMLYSSQAH 521


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