BLASTX nr result
ID: Bupleurum21_contig00020915
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00020915
(702 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003592692.1| Fibrillarin [Medicago truncatula] gi|3583453... 70 3e-27
ref|NP_567724.1| rRNA 2'-O-methyltransferase fibrillarin 2 [Arab... 72 6e-27
ref|XP_002869663.1| hypothetical protein ARALYDRAFT_492264 [Arab... 70 8e-27
gb|AAK76701.1| putative fibrillarin 2 protein AtFib2 [Arabidopsi... 71 1e-26
ref|XP_003552116.1| PREDICTED: rRNA 2'-O-methyltransferase fibri... 68 1e-26
>ref|XP_003592692.1| Fibrillarin [Medicago truncatula] gi|358345300|ref|XP_003636719.1|
Fibrillarin [Medicago truncatula]
gi|355481740|gb|AES62943.1| Fibrillarin [Medicago
truncatula] gi|355502654|gb|AES83857.1| Fibrillarin
[Medicago truncatula] gi|388494564|gb|AFK35348.1|
unknown [Medicago truncatula]
Length = 313
Score = 70.5 bits (171), Expect(3) = 3e-27
Identities = 30/58 (51%), Positives = 46/58 (79%)
Frame = +1
Query: 19 KDKDKIETEYKLWNPYTSKLAAAMKCGLTNLFVKPGSRVLYLGDVCGIIVSELSDLVG 192
+++D +TEY++WNP+ SKLAAA+ G+ N+++KPG++VLYLG G VS +SD+VG
Sbjct: 115 QNEDGTKTEYRIWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVG 172
Score = 48.9 bits (115), Expect(3) = 3e-27
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +3
Query: 207 DDVNKIERRSNVITIYDNCFMPWKYRMMVGMVDVIFVDSENPSQNHI 347
D VN ++R+NVI I ++ P KYRM+VGMVDVIF D P Q I
Sbjct: 189 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 235
Score = 48.9 bits (115), Expect(3) = 3e-27
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Frame = +2
Query: 353 HAEYYLKAEGKYIISTRTNNIDDTTGQVKDPIFSHSWKMMKS-----IEEVKLEPMWRDY 517
+A YYLKA G ++IS + N ID T + +FS +K+ +E+V LEP RD+
Sbjct: 239 NASYYLKAGGHFVISIKANCIDSTV--PAEAVFSAEVNKLKADQFKPMEQVTLEPFERDH 296
Query: 518 VMVVGCFRMP 547
VVG +R+P
Sbjct: 297 ACVVGGYRVP 306
>ref|NP_567724.1| rRNA 2'-O-methyltransferase fibrillarin 2 [Arabidopsis thaliana]
gi|67461067|sp|Q94AH9.2|MD36A_ARATH RecName:
Full=Mediator of RNA polymerase II transcription subunit
36a; AltName: Full=Fibrillarin-like protein 2; AltName:
Full=rRNA 2'-O-methyltransferase fibrillarin 2
gi|9965655|gb|AAG10104.1|AF233444_1 fibrillarin 2
[Arabidopsis thaliana] gi|4914455|emb|CAB43694.1|
fibrillarin-like protein [Arabidopsis thaliana]
gi|7269413|emb|CAB81373.1| fibrillarin-like protein
[Arabidopsis thaliana] gi|9965796|gb|AAG10153.1|
fibrillarin 2 [Arabidopsis thaliana]
gi|21536840|gb|AAM61172.1| fibrillarin 2 (AtFib2)
[Arabidopsis thaliana] gi|23297150|gb|AAN13105.1|
fibrillarin 2 (AtFib2) [Arabidopsis thaliana]
gi|332659685|gb|AEE85085.1| rRNA 2'-O-methyltransferase
fibrillarin 2 [Arabidopsis thaliana]
Length = 320
Score = 71.6 bits (174), Expect(3) = 6e-27
Identities = 32/62 (51%), Positives = 47/62 (75%)
Frame = +1
Query: 19 KDKDKIETEYKLWNPYTSKLAAAMKCGLTNLFVKPGSRVLYLGDVCGIIVSELSDLVGLW 198
+++D +TEY++WNP+ SKLAAA+ G+ N+++KPG++VLYLG G VS +SDLVG
Sbjct: 120 QNEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPE 179
Query: 199 DC 204
C
Sbjct: 180 GC 181
Score = 48.9 bits (115), Expect(3) = 6e-27
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +3
Query: 207 DDVNKIERRSNVITIYDNCFMPWKYRMMVGMVDVIFVDSENPSQNHI 347
D VN ++R+NVI I ++ P KYRM+VGMVDVIF D P Q I
Sbjct: 194 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 240
Score = 46.6 bits (109), Expect(3) = 6e-27
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = +2
Query: 353 HAEYYLKAEGKYIISTRTNNIDDTTGQVKDPIFSHSWKMM-----KSIEEVKLEPMWRDY 517
+A Y+LK+ G ++IS + N ID T + +F K + K E+V LEP RD+
Sbjct: 244 NASYFLKSGGHFVISIKANCIDSTVPA--EAVFQTEVKKLQQEQFKPAEQVTLEPFERDH 301
Query: 518 VMVVGCFRMP 547
VVG +RMP
Sbjct: 302 ACVVGGYRMP 311
>ref|XP_002869663.1| hypothetical protein ARALYDRAFT_492264 [Arabidopsis lyrata subsp.
lyrata] gi|297315499|gb|EFH45922.1| hypothetical protein
ARALYDRAFT_492264 [Arabidopsis lyrata subsp. lyrata]
Length = 317
Score = 69.7 bits (169), Expect(3) = 8e-27
Identities = 31/62 (50%), Positives = 46/62 (74%)
Frame = +1
Query: 19 KDKDKIETEYKLWNPYTSKLAAAMKCGLTNLFVKPGSRVLYLGDVCGIIVSELSDLVGLW 198
+++D + EY++WNP+ SKLAAA+ G+ N+++KPG++VLYLG G VS +SDLVG
Sbjct: 117 QNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPE 176
Query: 199 DC 204
C
Sbjct: 177 GC 178
Score = 48.9 bits (115), Expect(3) = 8e-27
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +3
Query: 207 DDVNKIERRSNVITIYDNCFMPWKYRMMVGMVDVIFVDSENPSQNHI 347
D VN ++R+NVI I ++ P KYRM+VGMVDVIF D P Q I
Sbjct: 191 DLVNMAKKRTNVIPIIEDARHPSKYRMLVGMVDVIFSDVAQPDQARI 237
Score = 48.1 bits (113), Expect(3) = 8e-27
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +2
Query: 353 HAEYYLKAEGKYIISTRTNNIDDTTGQVKDPIFSHSWKMM-----KSIEEVKLEPMWRDY 517
+A Y+LK+ G ++IS + N ID T + +F K + K E+V LEP RD+
Sbjct: 241 NASYFLKSGGHFVISIKANCIDSTVPA--EAVFQTEVKKLQQEQFKPAEQVTLEPFERDH 298
Query: 518 VMVVGCFRMPPEA 556
VVG +RMP +A
Sbjct: 299 ACVVGGYRMPKKA 311
>gb|AAK76701.1| putative fibrillarin 2 protein AtFib2 [Arabidopsis thaliana]
Length = 320
Score = 70.9 bits (172), Expect(3) = 1e-26
Identities = 31/58 (53%), Positives = 46/58 (79%)
Frame = +1
Query: 19 KDKDKIETEYKLWNPYTSKLAAAMKCGLTNLFVKPGSRVLYLGDVCGIIVSELSDLVG 192
+++D +TEY++WNP+ SKLAAA+ G+ N+++KPG++VLYLG G VS +SDLVG
Sbjct: 120 QNEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVG 177
Score = 48.9 bits (115), Expect(3) = 1e-26
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +3
Query: 207 DDVNKIERRSNVITIYDNCFMPWKYRMMVGMVDVIFVDSENPSQNHI 347
D VN ++R+NVI I ++ P KYRM+VGMVDVIF D P Q I
Sbjct: 194 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 240
Score = 46.6 bits (109), Expect(3) = 1e-26
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = +2
Query: 353 HAEYYLKAEGKYIISTRTNNIDDTTGQVKDPIFSHSWKMM-----KSIEEVKLEPMWRDY 517
+A Y+LK+ G ++IS + N ID T + +F K + K E+V LEP RD+
Sbjct: 244 NASYFLKSGGHFVISIKANCIDSTVPA--EAVFQTEVKKLQQEQFKPAEQVTLEPFERDH 301
Query: 518 VMVVGCFRMP 547
VVG +RMP
Sbjct: 302 ACVVGGYRMP 311
>ref|XP_003552116.1| PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like [Glycine
max]
Length = 313
Score = 68.2 bits (165), Expect(3) = 1e-26
Identities = 30/58 (51%), Positives = 45/58 (77%)
Frame = +1
Query: 19 KDKDKIETEYKLWNPYTSKLAAAMKCGLTNLFVKPGSRVLYLGDVCGIIVSELSDLVG 192
+++D + EY++WNP+ SKLAAA+ G+ N+++KPG+RVLYLG G VS +SD+VG
Sbjct: 114 QNEDGSKDEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVG 171
Score = 48.9 bits (115), Expect(3) = 1e-26
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +3
Query: 207 DDVNKIERRSNVITIYDNCFMPWKYRMMVGMVDVIFVDSENPSQNHI 347
D VN ++R+NVI I ++ P KYRM+VGMVDVIF D P Q I
Sbjct: 188 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 234
Score = 48.9 bits (115), Expect(3) = 1e-26
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = +2
Query: 353 HAEYYLKAEGKYIISTRTNNIDDTTGQVKDPIFSHSWKMMKS-----IEEVKLEPMWRDY 517
+A YYLKA G ++IS + N ID T + +F +K+ E+V LEP RD+
Sbjct: 238 NASYYLKAGGHFVISIKANCIDSTVPA--EAVFESEVNKLKADQFKPFEQVTLEPFERDH 295
Query: 518 VMVVGCFRMP 547
VVG +RMP
Sbjct: 296 ACVVGGYRMP 305