BLASTX nr result
ID: Bupleurum21_contig00020708
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00020708
(443 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containi... 138 4e-31
emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera] 138 4e-31
ref|XP_002531694.1| pentatricopeptide repeat-containing protein,... 137 7e-31
ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containi... 125 5e-27
ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containi... 123 1e-26
>ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
[Vitis vinifera]
Length = 822
Score = 138 bits (348), Expect = 4e-31
Identities = 61/113 (53%), Positives = 87/113 (76%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
LL A+C+N+ VD A++I++S+ KGF+ HLS Y+ALIC+LC+A V EA +FDNM E +
Sbjct: 690 LLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE 749
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERV 340
WN+DE+ WT+L+DGLL++G+ ++C KLLH ME K P+ QTY IL +EL R+
Sbjct: 750 WNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRI 802
Score = 64.3 bits (155), Expect = 1e-08
Identities = 38/118 (32%), Positives = 57/118 (48%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ C RVD A+++ M +KG P + Y I +LC EA+ + M +
Sbjct: 274 LINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRG 333
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERVYDCIG 355
+ +T LI GL + G E+ L H+M +GL P++ TYN L EL C+G
Sbjct: 334 CRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINEL-----CVG 386
Score = 63.5 bits (153), Expect = 2e-08
Identities = 36/113 (31%), Positives = 55/113 (48%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ +CRN +D A +++ M K+G P+ Y LI LC V EAL++ + M E
Sbjct: 239 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKG 298
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERV 340
+T+ I L E +L+ RM+ +G P+ QTY L L R+
Sbjct: 299 IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL 351
Score = 58.2 bits (139), Expect = 7e-07
Identities = 31/106 (29%), Positives = 55/106 (51%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ + ++ +VD A+ + M + G P++ +Y A+I L + + EA + D M E
Sbjct: 519 LIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQG 578
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNIL 319
+ + +T LIDGL + G + K+ H ME + P+ TY+ L
Sbjct: 579 LLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSL 624
Score = 54.7 bits (130), Expect = 8e-06
Identities = 36/117 (30%), Positives = 55/117 (47%)
Frame = +2
Query: 5 LAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQW 184
+ A C + AIE+ M K+G RP++ Y ALI L R + A+ ++ M +
Sbjct: 310 ITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGL 369
Query: 185 NSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERVYDCIG 355
+ V + LI+ L G K+ H ME G ++QTYN + K L C+G
Sbjct: 370 VPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGL-----CLG 421
>emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 138 bits (348), Expect = 4e-31
Identities = 61/113 (53%), Positives = 87/113 (76%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
LL A+C+N+ VD A++I++S+ KGF+ HLS Y+ALIC+LC+A V EA +FDNM E +
Sbjct: 830 LLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKE 889
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERV 340
WN+DE+ WT+L+DGLL++G+ ++C KLLH ME K P+ QTY IL +EL R+
Sbjct: 890 WNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRI 942
Score = 65.9 bits (159), Expect = 3e-09
Identities = 42/129 (32%), Positives = 66/129 (51%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ CRN R A +I++ M K+ P+L Y +LI LC+ EA + M
Sbjct: 631 LIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKG 690
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERVYDCIGVS 361
DEV +T LIDG + G + LL RM G P+ +TY++L K L++ +C+ +
Sbjct: 691 LAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQK--ECLLLE 748
Query: 362 *NIASRNMA 388
+A ++ A
Sbjct: 749 EKVAVQHEA 757
Score = 64.3 bits (155), Expect = 1e-08
Identities = 38/118 (32%), Positives = 57/118 (48%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ C RVD A+++ M +KG P + Y I +LC EA+ + M +
Sbjct: 316 LINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRG 375
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERVYDCIG 355
+ +T LI GL + G E+ L H+M +GL P++ TYN L EL C+G
Sbjct: 376 CRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINEL-----CVG 428
Score = 63.5 bits (153), Expect = 2e-08
Identities = 36/113 (31%), Positives = 55/113 (48%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ +CRN +D A +++ M K+G P+ Y LI LC V EAL++ + M E
Sbjct: 281 LILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKG 340
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERV 340
+T+ I L E +L+ RM+ +G P+ QTY L L R+
Sbjct: 341 IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRL 393
Score = 57.8 bits (138), Expect = 9e-07
Identities = 31/106 (29%), Positives = 55/106 (51%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ + ++ +VD A+ + M + G P++ +Y A+I L + + EA + D M E
Sbjct: 561 LIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQG 620
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNIL 319
+ + +T LIDGL + G + K+ H ME + P+ TY+ L
Sbjct: 621 LLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSL 666
Score = 54.7 bits (130), Expect = 8e-06
Identities = 36/117 (30%), Positives = 55/117 (47%)
Frame = +2
Query: 5 LAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQW 184
+ A C + AIE+ M K+G RP++ Y ALI L R + A+ ++ M +
Sbjct: 352 ITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGL 411
Query: 185 NSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERVYDCIG 355
+ V + LI+ L G K+ H ME G ++QTYN + K L C+G
Sbjct: 412 VPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGL-----CLG 463
>ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528670|gb|EEF30685.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 821
Score = 137 bits (346), Expect = 7e-31
Identities = 62/118 (52%), Positives = 86/118 (72%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
LL A+C++++VD A+EI+N M KGF+PHL YK LIC+LC S EALN+F ++ + Q
Sbjct: 689 LLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQ 748
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERVYDCIG 355
WNSD + WT+L+DGLLQ+GD+++C K L+ ME + PS TY ILA+EL +V IG
Sbjct: 749 WNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGKSIG 806
Score = 68.2 bits (165), Expect = 7e-10
Identities = 36/112 (32%), Positives = 54/112 (48%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ +CRN ++D A E+++ M K G P+ Y LI LC +GEA+++ + M E
Sbjct: 238 LILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKG 297
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELER 337
+T+ I L G + L+ M KG PS QTY + L R
Sbjct: 298 IEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFR 349
Score = 64.3 bits (155), Expect = 1e-08
Identities = 34/110 (30%), Positives = 56/110 (50%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ C R+ A+++ M +KG P + Y I SLC V +A+N+ +M +
Sbjct: 273 LINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKG 332
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKEL 331
+ +T +I GL + G E+ + H+M +GL P++ TYN L EL
Sbjct: 333 CSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINEL 382
Score = 59.7 bits (143), Expect = 2e-07
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Frame = +2
Query: 17 CRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQWNSDE 196
C+ +V A+ ++N +F+ P Y +LI CR + +A VFD M + N +
Sbjct: 208 CKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNS 267
Query: 197 VAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAK---ELERVYDCIGV 358
V ++ LI+GL +G +L M KG+ P+ TY + ++ RV D I +
Sbjct: 268 VTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINL 324
Score = 57.8 bits (138), Expect = 9e-07
Identities = 36/109 (33%), Positives = 55/109 (50%)
Frame = +2
Query: 5 LAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQW 184
+++ C RVD AI + SM KKG P + Y A+I L RA + A+ ++ M +
Sbjct: 309 ISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGL 368
Query: 185 NSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKEL 331
+ V + LI+ L +G I K+ ME G ++QTYN + K L
Sbjct: 369 VPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGL 417
Score = 57.0 bits (136), Expect = 2e-06
Identities = 28/106 (26%), Positives = 50/106 (47%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
++ YC+ ++D A+ ++ M + G + Y A+I L + + EA M E
Sbjct: 518 MIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQG 577
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNIL 319
+ + +T LI+GL + + K+ H ME K P++ TY L
Sbjct: 578 LQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSL 623
>ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
[Cucumis sativus]
Length = 830
Score = 125 bits (313), Expect = 5e-27
Identities = 58/116 (50%), Positives = 84/116 (72%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
LL C+N++V++A+ I+ SM GF+ HLS+YKALIC+LC+ + + EA +F M E
Sbjct: 700 LLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKH 759
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERVYDC 349
WNSDEVAWT+L+DGLL++G+ ++C KLLH ME + + QTY +LA+EL + DC
Sbjct: 760 WNSDEVAWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSAL-DC 814
Score = 60.8 bits (146), Expect = 1e-07
Identities = 35/110 (31%), Positives = 54/110 (49%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ C R++ A+++ M +KG P + Y + SLC A EA+ + M +
Sbjct: 278 LINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG 337
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKEL 331
+ +T LI GL + G EI L H+M GL P++ TYN L +L
Sbjct: 338 CVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQL 387
Score = 57.8 bits (138), Expect = 9e-07
Identities = 32/112 (28%), Positives = 54/112 (48%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ +CRN +D A +++ M K G P+ Y LI LC + EA+++ + M +
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG 302
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELER 337
+TI + L G + +LL +M+ +G P+ QT+ L L R
Sbjct: 303 IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSR 354
>ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like
[Cucumis sativus]
Length = 830
Score = 123 bits (309), Expect = 1e-26
Identities = 57/116 (49%), Positives = 83/116 (71%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
LL C+N++V++A+ I+ SM GF+ HLS+YKALIC+LC+ + + EA +F M E
Sbjct: 700 LLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKH 759
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELERVYDC 349
WNSDEV WT+L+DGLL++G+ ++C KLLH ME + + QTY +LA+EL + DC
Sbjct: 760 WNSDEVVWTVLLDGLLKEGETDLCLKLLHVMESRNCTLNFQTYVMLARELSAL-DC 814
Score = 60.8 bits (146), Expect = 1e-07
Identities = 35/110 (31%), Positives = 54/110 (49%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ C R++ A+++ M +KG P + Y + SLC A EA+ + M +
Sbjct: 278 LINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG 337
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKEL 331
+ +T LI GL + G EI L H+M GL P++ TYN L +L
Sbjct: 338 CVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQL 387
Score = 57.8 bits (138), Expect = 9e-07
Identities = 32/112 (28%), Positives = 54/112 (48%)
Frame = +2
Query: 2 LLAAYCRNMRVDTAIEIYNSMFKKGFRPHLSNYKALICSLCRASMVGEALNVFDNMFETQ 181
L+ +CRN +D A +++ M K G P+ Y LI LC + EA+++ + M +
Sbjct: 243 LILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKG 302
Query: 182 WNSDEVAWTILIDGLLQQGDAEICTKLLHRMEIKGLPPSSQTYNILAKELER 337
+TI + L G + +LL +M+ +G P+ QT+ L L R
Sbjct: 303 IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSR 354