BLASTX nr result
ID: Bupleurum21_contig00020463
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00020463
(1354 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002311805.1| chromatin remodeling complex subunit [Populu... 184 4e-44
ref|XP_003609575.1| Helicase swr1 [Medicago truncatula] gi|35551... 135 3e-29
ref|XP_003609574.1| Helicase swr1 [Medicago truncatula] gi|35551... 135 3e-29
emb|CAN84155.1| hypothetical protein VITISV_029853 [Vitis vinifera] 128 3e-27
emb|CBI26124.3| unnamed protein product [Vitis vinifera] 117 5e-24
>ref|XP_002311805.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222851625|gb|EEE89172.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 3427
Score = 184 bits (468), Expect = 4e-44
Identities = 157/471 (33%), Positives = 220/471 (46%), Gaps = 26/471 (5%)
Frame = +1
Query: 1 LASSRPHLATGTQVVESSSSQFGANSSLGDTVKEANTGLTSIESVKADCNASNRPPVVPS 180
L SSR L +GTQ+ +SS++Q+G +S K++ G E K D AS+RPPV P
Sbjct: 15 LRSSRLPLTSGTQMGDSSTAQYGGSSQAVGVGKDSKAGSAENEISKIDTFASSRPPVGPG 74
Query: 181 SGGHDINQGSISYLNKKYLNHGSPSSFDTRSAKSQSEERCDSPKWEKAKQKDSNKGGSKR 360
+ GHD QGS + + + +H SPSS DTRSA SQS+ER QKD K +KR
Sbjct: 75 TAGHDYYQGSGTQRSSQSFDHESPSSLDTRSANSQSQER-------GVNQKDGKKAAAKR 127
Query: 361 KRVDLSSNSVSQLGNSQP--PENSTFTSGMDEASTKYNQSRGISIHDGEHGQFNCMFQSS 534
KRVD S +S N Q P N T + K + G + GE+ FN
Sbjct: 128 KRVDSSLHSEMHGDNPQQLNPRN-TIVNPRRGKMNKVDSPGGYPVRGGENTSFN------ 180
Query: 535 SMLGHDSMRAAHRVKQEIQHQAEKSLDSLHISNSLSRTPHSRHPEEIEVSSSHNASIFRQ 714
+ P+S ++EVSSS ++ +Q
Sbjct: 181 ------------------------------------KVPNS---GQLEVSSSFVSAGQQQ 201
Query: 715 EISHPLSHDALDTRDIKYQNKTGSLIEKSRVPGFSFHASGGNSSAETLMHKSA----GTA 882
S P +H++L +R + QNK G +E+S +P FS +A GN++AE + +SA G++
Sbjct: 202 GGSLPSAHESLTSRGMWNQNKAGLPLERSHIPRFSSNAVSGNTTAEIQLQQSAISSLGSS 261
Query: 883 DY--VYGMEIGTSGPNA-TAVPAHLGSVQFSNT-YDNPILGPKVLKERNIKXXXXXXXXX 1050
+ V+G TS P G VQ+S++ + L + K
Sbjct: 262 AFSKVHGGMPVTSNPTGPMGELGFAGPVQYSSSEHQKHGLTKGAVASSAEKTSEGHFFAA 321
Query: 1051 XXXG----KGAFGKALDYEGGSLHTIGHENIAVQGSMLTTES------------IRKLPV 1182
+ GK L+ GGS + + VQG T+ S + K PV
Sbjct: 322 NRVDDFPTSLSTGKILE-NGGSSNMFAEASKIVQGGRQTSNSELTMIRSTSPRDVGKSPV 380
Query: 1183 SQSSSASVLPFKEHHLKQLRAQCLVYLAFRNGLEPKKLHLDFALGNFLPKE 1335
Q S+ S +PF E L+QLRAQCLV+LAFRN L PKKLHLD ALGN + K+
Sbjct: 381 FQGSALSGMPFNEQQLRQLRAQCLVFLAFRNDLMPKKLHLDIALGNAVSKD 431
>ref|XP_003609575.1| Helicase swr1 [Medicago truncatula] gi|355510630|gb|AES91772.1|
Helicase swr1 [Medicago truncatula]
Length = 3310
Score = 135 bits (339), Expect = 3e-29
Identities = 126/443 (28%), Positives = 179/443 (40%), Gaps = 17/443 (3%)
Frame = +1
Query: 61 QFGANSSLGDTVKEANTGLTSIESVKADCNASNRPPVVPSSGGHDINQGSISYLNKKYLN 240
Q G++S K++ L E+ K + S RPP+ P+ G D QGS++ + + +
Sbjct: 101 QIGSSSQAVGGAKDSRPSLAESEAPKMEPFTSGRPPIAPTGGAPDYYQGSVAQRSNQSFD 160
Query: 241 HGSPSSFDTRSAKSQSEERCDSPKWEK-AKQKDSNKGGSKRKRVDLSSNSVSQLGNSQPP 417
SPSS D+RSA S S+++ D+ W+K A QKD KG +KRKR D +S + +S
Sbjct: 161 QESPSSLDSRSANSLSQDKRDTVIWDKQANQKDGKKGNTKRKRGDSTSPVEMHVDSSSLV 220
Query: 418 E-NSTFTSGMDEASTKYNQSRGISIHDGEHGQFNCMFQSSSMLGHDSMRAAHRVKQEIQH 594
E +T + TK S GI GE F+ +
Sbjct: 221 EPRNTGVNTRKGKMTKTEPSDGIPAKSGEMTNFSVV------------------------ 256
Query: 595 QAEKSLDSLHISNSLSRTPHSRHPEEIEVSSSHNASIFRQEISHPLSHDAL--DTRDIKY 768
P++ E I S + ++ R ++P H L T
Sbjct: 257 ------------------PNNSQMENISTFSGNMKTMLR---ANPEGHHLLAKQTDSTNI 295
Query: 769 QNKTGSLIEKSRVPGFSFHASGGNSSAETLMHKSAGTADYVYGMEIGTSGPNATAVPAHL 948
N TG R P + SSA K G V+G + + +A P
Sbjct: 296 GNPTG------RAPNSKYPEDLEVSSAHIAPGKQQGAYARVHGGMVVPANVSAMNEPVFS 349
Query: 949 GSVQFSNTYDNPILGPKVLKERNIKXXXXXXXXXXXXGKGAFGKALDYEGGSLHT----- 1113
S+Q+ G L+ +GGS +T
Sbjct: 350 SSMQY-------------------------------------GVPLNRDGGSSNTLADGH 372
Query: 1114 ----IGHENIAVQGSMLTT----ESIRKLPVSQSSSASVLPFKEHHLKQLRAQCLVYLAF 1269
IG +N + +ML K PV +SS +PFKE+ LKQLRAQCLV+LAF
Sbjct: 373 QISQIGRQNSGSEMTMLRQGVPPRDTGKSPVPAASST--MPFKENQLKQLRAQCLVFLAF 430
Query: 1270 RNGLEPKKLHLDFALGNFLPKED 1338
RNGL PKKLHL+ A G F +ED
Sbjct: 431 RNGLPPKKLHLEVAFGTFFARED 453
>ref|XP_003609574.1| Helicase swr1 [Medicago truncatula] gi|355510629|gb|AES91771.1|
Helicase swr1 [Medicago truncatula]
Length = 3312
Score = 135 bits (339), Expect = 3e-29
Identities = 126/443 (28%), Positives = 179/443 (40%), Gaps = 17/443 (3%)
Frame = +1
Query: 61 QFGANSSLGDTVKEANTGLTSIESVKADCNASNRPPVVPSSGGHDINQGSISYLNKKYLN 240
Q G++S K++ L E+ K + S RPP+ P+ G D QGS++ + + +
Sbjct: 101 QIGSSSQAVGGAKDSRPSLAESEAPKMEPFTSGRPPIAPTGGAPDYYQGSVAQRSNQSFD 160
Query: 241 HGSPSSFDTRSAKSQSEERCDSPKWEK-AKQKDSNKGGSKRKRVDLSSNSVSQLGNSQPP 417
SPSS D+RSA S S+++ D+ W+K A QKD KG +KRKR D +S + +S
Sbjct: 161 QESPSSLDSRSANSLSQDKRDTVIWDKQANQKDGKKGNTKRKRGDSTSPVEMHVDSSSLV 220
Query: 418 E-NSTFTSGMDEASTKYNQSRGISIHDGEHGQFNCMFQSSSMLGHDSMRAAHRVKQEIQH 594
E +T + TK S GI GE F+ +
Sbjct: 221 EPRNTGVNTRKGKMTKTEPSDGIPAKSGEMTNFSVV------------------------ 256
Query: 595 QAEKSLDSLHISNSLSRTPHSRHPEEIEVSSSHNASIFRQEISHPLSHDAL--DTRDIKY 768
P++ E I S + ++ R ++P H L T
Sbjct: 257 ------------------PNNSQMENISTFSGNMKTMLR---ANPEGHHLLAKQTDSTNI 295
Query: 769 QNKTGSLIEKSRVPGFSFHASGGNSSAETLMHKSAGTADYVYGMEIGTSGPNATAVPAHL 948
N TG R P + SSA K G V+G + + +A P
Sbjct: 296 GNPTG------RAPNSKYPEDLEVSSAHIAPGKQQGAYARVHGGMVVPANVSAMNEPVFS 349
Query: 949 GSVQFSNTYDNPILGPKVLKERNIKXXXXXXXXXXXXGKGAFGKALDYEGGSLHT----- 1113
S+Q+ G L+ +GGS +T
Sbjct: 350 SSMQY-------------------------------------GVPLNRDGGSSNTLADGH 372
Query: 1114 ----IGHENIAVQGSMLTT----ESIRKLPVSQSSSASVLPFKEHHLKQLRAQCLVYLAF 1269
IG +N + +ML K PV +SS +PFKE+ LKQLRAQCLV+LAF
Sbjct: 373 QISQIGRQNSGSEMTMLRQGVPPRDTGKSPVPAASST--MPFKENQLKQLRAQCLVFLAF 430
Query: 1270 RNGLEPKKLHLDFALGNFLPKED 1338
RNGL PKKLHL+ A G F +ED
Sbjct: 431 RNGLPPKKLHLEVAFGTFFARED 453
>emb|CAN84155.1| hypothetical protein VITISV_029853 [Vitis vinifera]
Length = 771
Score = 128 bits (322), Expect = 3e-27
Identities = 83/203 (40%), Positives = 106/203 (52%), Gaps = 8/203 (3%)
Frame = +1
Query: 1 LASSRPHLATGTQVVESSSSQFGANSSLGDTVKEANTGLTSIESVKADCNASNRPPVVPS 180
L SSR + GT V +SS+++ +SS K+ GL E K D AS+RPPV PS
Sbjct: 72 LKSSRLPSSGGTHVGDSSAARLAGSSSAAGVAKDTQAGLAENEMAKIDAFASSRPPVGPS 131
Query: 181 SGGHDINQGSISYLN-KKYLNHGSPSSFDTRSAKSQSEERCDSPKWEK-AKQKDSNKGGS 354
S GHDI QGS+S+ + K +H SPSS DTRSA SQS+ER DS WEK QKDS K +
Sbjct: 132 SAGHDIYQGSVSHKSGGKSFDHESPSSLDTRSANSQSQERRDSANWEKQVNQKDSKKSNA 191
Query: 355 KRKRVDLSSNSVSQLGNSQPPE--NSTFTSGMDEASTKYNQSRGISIHDGEHGQFNCMFQ 528
KRKR D S + N P+ NS + K S+ GE+ N +
Sbjct: 192 KRKRTDPSPAMEPHVDNPNHPDTRNSVVNPRKGKLMNKVESPGSFSVKSGENTNVNIVQS 251
Query: 529 SSSM----LGHDSMRAAHRVKQE 585
+ M + SMR+ R KQE
Sbjct: 252 TGQMEQFPISSGSMRSMLRAKQE 274
Score = 104 bits (260), Expect = 5e-20
Identities = 100/354 (28%), Positives = 140/354 (39%), Gaps = 87/354 (24%)
Frame = +1
Query: 535 SMLGHDSMRAAHRVK---QEIQHQAEKSLDSLHI-SNSLSRTPHSRHPEEIEVSSSHNAS 702
S GHD + + K + H++ SLD+ S S R + +++ S ++
Sbjct: 131 SSAGHDIYQGSVSHKSGGKSFDHESPSSLDTRSANSQSQERRDSANWEKQVNQKDSKKSN 190
Query: 703 IFRQEIS-------HPLSHDALDTRDIKYQNKTGSLIEKSRVPGFSFHASGGNSSAET-- 855
R+ H + + DTR+ + G L+ K PG SG N++
Sbjct: 191 AKRKRTDPSPAMEPHVDNPNHPDTRNSVVNPRKGKLMNKVESPGSFSVKSGENTNVNIVQ 250
Query: 856 ------------------LMHKSAGTADYVYGMEIGTSGPNATAVPAHLGSVQFS-NTYD 978
L K G A ++G G P S+QFS ++YD
Sbjct: 251 STGQMEQFPISSGSMRSMLRAKQEGAAAKIHG---GMPSSYPVVEPGFSSSMQFSGSSYD 307
Query: 979 NPILGPKVLKERNIKXXXXXXXXXXXXGKG------------------------------ 1068
N L K+ KERN++ G
Sbjct: 308 NHALVAKMHKERNMEAFSAMNSSLLEASSGKNAVDAEQWKHGLMRSAVIGAPEKTIEAQM 367
Query: 1069 -------------AFGKALDYEGGSLHTIGHENIAVQG---------SMLTTESIR---K 1173
+ GK LD+EGG+ +T G+ N QG SML + + R K
Sbjct: 368 LSGNHGEEESKTLSIGKVLDHEGGTSNTSGNANKMAQGGGANMVTEMSMLRSATFRDAGK 427
Query: 1174 LPVSQSSSASVLPFKEHHLKQLRAQCLVYLAFRNGLEPKKLHLDFALGNFLPKE 1335
P+ Q+ S +PFKE HLKQLRAQCLV+LA RN L PKKLHL+ ALGN PKE
Sbjct: 428 SPIPQALPFSGMPFKEQHLKQLRAQCLVFLAIRNNLMPKKLHLEIALGNIYPKE 481
>emb|CBI26124.3| unnamed protein product [Vitis vinifera]
Length = 2266
Score = 117 bits (294), Expect = 5e-24
Identities = 73/170 (42%), Positives = 91/170 (53%), Gaps = 4/170 (2%)
Frame = +1
Query: 1 LASSRPHLATGTQVVESSSSQFGANSSLGDTVKEANTGLTSIESVKADCNASNRPPVVPS 180
L SSR + GT V +SS+++ +SS K+ GL E K D AS+RPPV PS
Sbjct: 72 LKSSRLPSSGGTHVGDSSAARLAGSSSAAGVAKDTQAGLAENEMAKIDAFASSRPPVGPS 131
Query: 181 SGGHDINQGSISYLN-KKYLNHGSPSSFDTRSAKSQSEERCDSPKWEK-AKQKDSNKGGS 354
S GHDI QGS+S+ + K +H SPSS DTRSA SQS+ER DS WEK QKDS K +
Sbjct: 132 SAGHDIYQGSVSHKSGGKSFDHESPSSLDTRSANSQSQERRDSANWEKQVNQKDSKKSNA 191
Query: 355 KRKRVDLSSNSVSQLGNSQPPE--NSTFTSGMDEASTKYNQSRGISIHDG 498
KRKR D S + N P+ NS + K S+ G
Sbjct: 192 KRKRTDPSPAMEPHVDNPNHPDTRNSVVNPRKGKLMNKVESPGSFSVKSG 241
Score = 102 bits (255), Expect = 2e-19
Identities = 97/334 (29%), Positives = 136/334 (40%), Gaps = 67/334 (20%)
Frame = +1
Query: 535 SMLGHDSMRAAHRVK---QEIQHQAEKSLDSLHI-SNSLSRTPHSRHPEEIEVSSSHNAS 702
S GHD + + K + H++ SLD+ S S R + +++ S ++
Sbjct: 131 SSAGHDIYQGSVSHKSGGKSFDHESPSSLDTRSANSQSQERRDSANWEKQVNQKDSKKSN 190
Query: 703 IFRQEIS-------HPLSHDALDTRDIKYQNKTGSLIEKSRVPGFSFHASGGNSSAETLM 861
R+ H + + DTR+ + G L+ K PG SF
Sbjct: 191 AKRKRTDPSPAMEPHVDNPNHPDTRNSVVNPRKGKLMNKVESPG-SFSVK---------- 239
Query: 862 HKSAGTADYVYGMEIGTSGPNATAVPAHLGSVQFS-NTYDNPILGPKVLKERNIKXXXXX 1038
+G A ++G G P S+QFS ++YDN L K+ KERN++
Sbjct: 240 ---SGAAAKIHG---GMPSSYPVVEPGFSSSMQFSGSSYDNHALVAKMHKERNMEAFSAM 293
Query: 1039 XXXXXXXGKG-------------------------------------------AFGKALD 1089
G + GK LD
Sbjct: 294 NSSLLEASSGKNAVDAEQWKHGLMRSAVIGAPEKTIEAQMLSGNHGEEESKTLSIGKVLD 353
Query: 1090 YEGGSLHTIGHENIAVQG---------SMLTTESIR---KLPVSQSSSASVLPFKEHHLK 1233
+EGG+ +T G+ N QG SML + + R K P+ Q+ S +PFKE HLK
Sbjct: 354 HEGGTSNTSGNANKMAQGGGANMVTEMSMLRSATFRDAGKSPIPQALPFSGMPFKEQHLK 413
Query: 1234 QLRAQCLVYLAFRNGLEPKKLHLDFALGNFLPKE 1335
QLRAQCLV+LA RN L PKKLHL+ ALGN PKE
Sbjct: 414 QLRAQCLVFLAIRNNLMPKKLHLEIALGNIYPKE 447