BLASTX nr result

ID: Bupleurum21_contig00020333 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00020333
         (283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004172791.1| PREDICTED: E3 ubiquitin-protein ligase PRT1-...    82   6e-14
ref|XP_004139635.1| PREDICTED: E3 ubiquitin-protein ligase PRT1-...    82   6e-14
ref|XP_002301781.1| predicted protein [Populus trichocarpa] gi|2...    82   6e-14
gb|ABK94910.1| unknown [Populus trichocarpa]                           82   6e-14
emb|CBI37313.3| unnamed protein product [Vitis vinifera]               81   1e-13

>ref|XP_004172791.1| PREDICTED: E3 ubiquitin-protein ligase PRT1-like [Cucumis sativus]
          Length = 315

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
 Frame = +3

Query: 3   CPVCRHTYHHFPNICQMLHYLLLKIYPITYKRREAQTLEYEIAKDCFSPELKDPVCALQP 182
           CP+CR +Y+HFP IC++LH L+LKIYP +YKRRE+Q LE E     FSP+     C  Q 
Sbjct: 9   CPICRRSYYHFPTICEILHQLILKIYPASYKRRESQILEVEKKIGFFSPQFDSLACGSQA 68

Query: 183 SHKSDQRSHLAD-AGQSFPTNTK 248
             K +   HL D A     TNTK
Sbjct: 69  GMKVE---HLEDSANGELNTNTK 88


>ref|XP_004139635.1| PREDICTED: E3 ubiquitin-protein ligase PRT1-like [Cucumis sativus]
          Length = 359

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
 Frame = +3

Query: 3   CPVCRHTYHHFPNICQMLHYLLLKIYPITYKRREAQTLEYEIAKDCFSPELKDPVCALQP 182
           CP+CR +Y+HFP IC++LH L+LKIYP +YKRRE+Q LE E     FSP+     C  Q 
Sbjct: 53  CPICRRSYYHFPTICEILHQLILKIYPASYKRRESQILEVEKKIGFFSPQFDSLACGSQA 112

Query: 183 SHKSDQRSHLAD-AGQSFPTNTK 248
             K +   HL D A     TNTK
Sbjct: 113 GMKVE---HLEDSANGELNTNTK 132


>ref|XP_002301781.1| predicted protein [Populus trichocarpa] gi|222843507|gb|EEE81054.1|
           predicted protein [Populus trichocarpa]
          Length = 382

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
 Frame = +3

Query: 3   CPVCRHTYHHFPNICQMLHYLLLKIYPITYKRREAQTLEYEIAKDCFSPELKDPVC--AL 176
           CP+CRH Y+HFP ICQMLH+LL K+YP+ Y RRE QTLE E+    FSP+     C   L
Sbjct: 62  CPICRHPYNHFPTICQMLHFLLFKLYPMVYTRREEQTLEEEMEMGFFSPQFGYKECNSDL 121

Query: 177 QPSHKSDQRSHLADA 221
           +  H  D R H  D+
Sbjct: 122 KHHHPRD-RKHALDS 135


>gb|ABK94910.1| unknown [Populus trichocarpa]
          Length = 469

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
 Frame = +3

Query: 3   CPVCRHTYHHFPNICQMLHYLLLKIYPITYKRREAQTLEYEIAKDCFSPELKDPVC--AL 176
           CP+CRH Y+HFP ICQMLH+LL K+YP+ Y RRE QTLE E+    FSP+     C   L
Sbjct: 75  CPICRHPYNHFPTICQMLHFLLFKLYPMVYTRREEQTLEEEMEMGFFSPQFGYKECNSDL 134

Query: 177 QPSHKSDQRSHLADA 221
           +  H  D R H  D+
Sbjct: 135 KHHHPRD-RKHALDS 148


>emb|CBI37313.3| unnamed protein product [Vitis vinifera]
          Length = 451

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 33/49 (67%), Positives = 39/49 (79%)
 Frame = +3

Query: 3   CPVCRHTYHHFPNICQMLHYLLLKIYPITYKRREAQTLEYEIAKDCFSP 149
           CP+CR+ Y HFP ICQMLH++LLK+YP+ YKRRE QTLE E    CFSP
Sbjct: 41  CPICRNPYSHFPTICQMLHFMLLKMYPVAYKRREKQTLEREEETRCFSP 89


Top