BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00020290
         (1523 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAE02851.4| OSJNBa0014F04.17 [Oryza sativa Japonica Group]         85   6e-14
gb|ABB46561.1| retrotransposon protein, putative, Ty1-copia subc...    78   5e-12
gb|AAL73557.1|AC079632_1 Putative gag-pol polyprotein [Oryza sat...    78   5e-12
gb|AAM08642.1|AC108883_15 Putative copia-type pol polyprotein [O...    78   5e-12
emb|CAD40164.2| OSJNBa0061A09.3 [Oryza sativa Japonica Group] gi...    77   9e-12

>emb|CAE02851.4| OSJNBa0014F04.17 [Oryza sativa Japonica Group]
          Length = 491

 Score = 84.7 bits (208), Expect = 6e-14
 Identities = 95/388 (24%), Positives = 175/388 (45%), Gaps = 11/388 (2%)
 Frame = -1

Query: 1523 FENFMAVPGEGITEMYERYSKLVNDLK-LRGKTYEDKVINKRFLMTLPDHLEDKVTAVRE 1347
            FE F+ + GE  ++MY+R SK+VN++K L  K   D+V+ K+ +  +       VT +RE
Sbjct: 143  FERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIRE 202

Query: 1346 GRHNIETTSLDRIYGILKTYEMEDQQKQAIKQKNKGNISSTALVVHEPKAANYHEESPRL 1167
             R + +T +   + G +  ++M  Q+ + + Q            +++    +  +E   L
Sbjct: 203  -RPDYKTLTPHDLLGHILAHDMLVQESKDVIQ-----------YINQSSTTSIKKEDLAL 250

Query: 1166 KADVNASFECETVHEDSQSDEDDYFSIEELEELDDKSMALLARKFKNIRFKRTFKPKPRY 987
            KA               + +E++    +   E+DD+ MAL  +KF   +F R        
Sbjct: 251  KA---------------KKEEEENRKSKSKAEIDDEEMALFVKKFS--KFMR-------- 285

Query: 986  QQGSFPRGSSSGKKMITSGYKSGSFDKSKIKCYNCSEIGHFATECRKPKQ-TYTK----- 825
            + G F  GSS+     +SG  S         CY C E GHF T+C   K  ++ K     
Sbjct: 286  RSGFFKGGSSNHYSNKSSGRHSTRV------CYVCKEPGHFITDCPHLKDGSHIKEDKKK 339

Query: 824  -ESYDELKLKYEALQRKLKGRAYIAEGXXXXXXXXXXXKIEGNLALMANSDESSSSKKVT 648
             E  DE K K++  +R+  G+A++               I G+ + +++SDE  ++   T
Sbjct: 340  GEKKDEKKEKHKHSKREHYGQAHLG-------------MIFGSDSKLSSSDEEGAA---T 383

Query: 647  FIPDPCSKPECIQHIRNQSMNMWNLQEKIK---DHKKNEIELNMRIKELEEKVIRLDELE 477
            F   P S P    H  ++   +  + ++ K    HK   ++L   + + E++V+  DEL 
Sbjct: 384  FTVKPSSPPRLFDHSSDEDAPICLMAKESKVPSPHKSFNVDL---VSDEEDEVLD-DELF 439

Query: 476  IGIRRHMKRNEFLEKDNVRLKEKFETIE 393
              I +    +  L +   R+++++ T+E
Sbjct: 440  KSITKESLPH--LSELLGRIEDQYATLE 465


>gb|ABB46561.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1991

 Score = 78.2 bits (191), Expect = 5e-12
 Identities = 93/413 (22%), Positives = 179/413 (43%), Gaps = 27/413 (6%)
 Frame = -1

Query: 1523 FENFMAVPGEGITEMYERYSKLVNDLK-LRGKTYEDKVINKRFLMTLPDHLEDKVTAVRE 1347
            FE F+ + GE  ++MY+R SK+VN++K L  K   D+V+ K+ +  +       VT +RE
Sbjct: 74   FERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNFTLVTIIRE 133

Query: 1346 GRHNIETTSLDRIYGILKTYEMEDQQKQAIKQKNKGNISSTALVVHEPKAANYHEESPRL 1167
             R + +T +   + G +  ++M  Q+ + + Q            +++   A+  +E   L
Sbjct: 134  -RPDYKTLTPHDLLGRILAHDMLVQESKDVIQ-----------YINQSSTASIKKEDLAL 181

Query: 1166 KADVNASFECETVHEDSQSDEDDYFSIEELEELDDKSMALLARKFKNIRFKRTFKPKPRY 987
            KA               + +E++    +   E+DD+ MAL  +KF   +F R        
Sbjct: 182  KA---------------KEEEEENRKSKSKAEIDDEEMALFVKKFG--KFMR-------- 216

Query: 986  QQGSFPRGSSSGKKMITSGYKSGSFDKSKIKCYNCSEIGHFATECRKPKQ-TYTKE--SY 816
            + G F  GSS      +SG  S         CY C E GHF  +C   K  ++ KE    
Sbjct: 217  RSGFFKGGSSKHYSNKSSGRHSARV------CYVCKEPGHFIADCPHLKDGSHIKEDKKK 270

Query: 815  DELKLKYEALQRKLKGRAYIAEGXXXXXXXXXXXKIEGNLALMANSDESSSSKKVTFIPD 636
            DE K K++  + +  G+A++               I G+ +  ++SDE   +   TF   
Sbjct: 271  DEKKEKHKHSKSEHYGQAHLG-------------MIFGSDSKSSSSDEEGVA---TFAVK 314

Query: 635  PCSKPECIQHIRNQS------MNMWNL------QEKIKDH-----------KKNEIELNM 525
            P S P    +  +++      +  +N+      +++++D            K++   L+ 
Sbjct: 315  PSSPPRLFNYSSDENAKVPSPLKSFNVDLVSDEEDEVEDEVMDDELFKSITKESLPHLSE 374

Query: 524  RIKELEEKVIRLDELEIGIRRHMKRNEFLEKDNVRLKEKFETIELKFKAYQTS 366
             +  +E++ + L+  E  +    +R+  L+ +  + +EK E +   +K  + S
Sbjct: 375  LLGRIEDQYVTLERQETLLIHEKERSHELKSELAKEREKNEALVRLYKQTKES 427


>gb|AAL73557.1|AC079632_1 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 491

 Score = 78.2 bits (191), Expect = 5e-12
 Identities = 93/413 (22%), Positives = 179/413 (43%), Gaps = 27/413 (6%)
 Frame = -1

Query: 1523 FENFMAVPGEGITEMYERYSKLVNDLK-LRGKTYEDKVINKRFLMTLPDHLEDKVTAVRE 1347
            FE F+ + GE  ++MY+R SK+VN++K L  K   D+V+ K+ +  +       VT +RE
Sbjct: 74   FERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNFTLVTIIRE 133

Query: 1346 GRHNIETTSLDRIYGILKTYEMEDQQKQAIKQKNKGNISSTALVVHEPKAANYHEESPRL 1167
             R + +T +   + G +  ++M  Q+ + + Q            +++   A+  +E   L
Sbjct: 134  -RPDYKTLTPHDLLGRILAHDMLVQESKDVIQ-----------YINQSSTASIKKEDLAL 181

Query: 1166 KADVNASFECETVHEDSQSDEDDYFSIEELEELDDKSMALLARKFKNIRFKRTFKPKPRY 987
            KA               + +E++    +   E+DD+ MAL  +KF   +F R        
Sbjct: 182  KA---------------KEEEEENRKSKSKAEIDDEEMALFVKKFG--KFMR-------- 216

Query: 986  QQGSFPRGSSSGKKMITSGYKSGSFDKSKIKCYNCSEIGHFATECRKPKQ-TYTKE--SY 816
            + G F  GSS      +SG  S         CY C E GHF  +C   K  ++ KE    
Sbjct: 217  RSGFFKGGSSKHYSNKSSGRHSARV------CYVCKEPGHFIADCPHLKDGSHIKEDKKK 270

Query: 815  DELKLKYEALQRKLKGRAYIAEGXXXXXXXXXXXKIEGNLALMANSDESSSSKKVTFIPD 636
            DE K K++  + +  G+A++               I G+ +  ++SDE   +   TF   
Sbjct: 271  DEKKEKHKHSKSEHYGQAHLG-------------MIFGSDSKSSSSDEEGVA---TFAVK 314

Query: 635  PCSKPECIQHIRNQS------MNMWNL------QEKIKDH-----------KKNEIELNM 525
            P S P    +  +++      +  +N+      +++++D            K++   L+ 
Sbjct: 315  PSSPPRLFNYSSDENAKVPSPLKSFNVDLVSDEEDEVEDEVMDDELFKSITKESLPHLSE 374

Query: 524  RIKELEEKVIRLDELEIGIRRHMKRNEFLEKDNVRLKEKFETIELKFKAYQTS 366
             +  +E++ + L+  E  +    +R+  L+ +  + +EK E +   +K  + S
Sbjct: 375  LLGRIEDQYVTLERQETLLIHEKERSHELKSELAKEREKNEALVRLYKQTKES 427


>gb|AAM08642.1|AC108883_15 Putative copia-type pol polyprotein [Oryza sativa Japonica Group]
          Length = 1866

 Score = 78.2 bits (191), Expect = 5e-12
 Identities = 93/413 (22%), Positives = 179/413 (43%), Gaps = 27/413 (6%)
 Frame = -1

Query: 1523 FENFMAVPGEGITEMYERYSKLVNDLK-LRGKTYEDKVINKRFLMTLPDHLEDKVTAVRE 1347
            FE F+ + GE  ++MY+R SK+VN++K L  K   D+V+ K+ +  +       VT +RE
Sbjct: 8    FERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNFTLVTIIRE 67

Query: 1346 GRHNIETTSLDRIYGILKTYEMEDQQKQAIKQKNKGNISSTALVVHEPKAANYHEESPRL 1167
             R + +T +   + G +  ++M  Q+ + + Q            +++   A+  +E   L
Sbjct: 68   -RPDYKTLTPHDLLGRILAHDMLVQESKDVIQ-----------YINQSSTASIKKEDLAL 115

Query: 1166 KADVNASFECETVHEDSQSDEDDYFSIEELEELDDKSMALLARKFKNIRFKRTFKPKPRY 987
            KA               + +E++    +   E+DD+ MAL  +KF   +F R        
Sbjct: 116  KA---------------KEEEEENRKSKSKAEIDDEEMALFVKKFG--KFMR-------- 150

Query: 986  QQGSFPRGSSSGKKMITSGYKSGSFDKSKIKCYNCSEIGHFATECRKPKQ-TYTKE--SY 816
            + G F  GSS      +SG  S         CY C E GHF  +C   K  ++ KE    
Sbjct: 151  RSGFFKGGSSKHYSNKSSGRHSARV------CYVCKEPGHFIADCPHLKDGSHIKEDKKK 204

Query: 815  DELKLKYEALQRKLKGRAYIAEGXXXXXXXXXXXKIEGNLALMANSDESSSSKKVTFIPD 636
            DE K K++  + +  G+A++               I G+ +  ++SDE   +   TF   
Sbjct: 205  DEKKEKHKHSKSEHYGQAHLG-------------MIFGSDSKSSSSDEEGVA---TFAVK 248

Query: 635  PCSKPECIQHIRNQS------MNMWNL------QEKIKDH-----------KKNEIELNM 525
            P S P    +  +++      +  +N+      +++++D            K++   L+ 
Sbjct: 249  PSSPPRLFNYSSDENAKVPSPLKSFNVDLVSDEEDEVEDEVMDDELFKSITKESLPHLSE 308

Query: 524  RIKELEEKVIRLDELEIGIRRHMKRNEFLEKDNVRLKEKFETIELKFKAYQTS 366
             +  +E++ + L+  E  +    +R+  L+ +  + +EK E +   +K  + S
Sbjct: 309  LLGRIEDQYVTLERQETLLIHEKERSHELKSELAKEREKNEALVRLYKQTKES 361


>emb|CAD40164.2| OSJNBa0061A09.3 [Oryza sativa Japonica Group]
            gi|38346854|emb|CAD39936.2| OSJNBa0091C12.14 [Oryza
            sativa Japonica Group]
          Length = 393

 Score = 77.4 bits (189), Expect = 9e-12
 Identities = 84/314 (26%), Positives = 126/314 (40%), Gaps = 8/314 (2%)
 Frame = -1

Query: 1523 FENFMAVPGEGITEMYERYSKLVNDLK-LRGKTYEDKVINKRFLMTLPDHLEDKVTAVRE 1347
            FE F+ + GE  ++MY+R SK+VN++K L  K   D+V+ K+ +  +       VT +RE
Sbjct: 143  FERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIRE 202

Query: 1346 GRHNIETTSLDRIYGILKTYEMEDQQKQAIKQKNKGNISSTALVVHEPKAANYHEESPRL 1167
                   T  D +  IL    +  + K+ I+  N+   SST  +  E  A    EE    
Sbjct: 203  RPDYKTLTPHDLLGRILAHDILVQESKEVIQYINQ---SSTTSIKKEDLALKAKEE---- 255

Query: 1166 KADVNASFECETVHEDSQSDEDDYFSIEELEELDDKSMALLARKFKNIRFKRTFKPKPRY 987
                                E++    +  EE+DD+ M L  +KF   +F R        
Sbjct: 256  --------------------EEESHKSKSKEEIDDEEMVLFVKKFG--KFMR-------- 285

Query: 986  QQGSFPRGSSSGKKMITSGYKSGSFDKSKIKCYNCSEIGHFATECRKPKQ-TYTKE--SY 816
            + G F   SS      +SG  S         CY C E GHF  +C   K  ++ KE    
Sbjct: 286  RSGFFKGNSSKHHSSKSSGRHSARV------CYVCKEPGHFIADCPHLKDGSHIKEDKKK 339

Query: 815  DELKLKYEALQRKLKGRAYIAEGXXXXXXXXXXXKIEGNLALMANSDESSSSKK----VT 648
            DE K KY+  +R+  G+A+                    L ++ +SD  SSS       T
Sbjct: 340  DEKKEKYKHSKREHYGQAH--------------------LGMIFSSDSESSSSDGEGVAT 379

Query: 647  FIPDPCSKPECIQH 606
            F   P S P    +
Sbjct: 380  FAVKPSSPPRLFDY 393