BLASTX nr result

ID: Bupleurum21_contig00020286 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00020286
         (548 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   110   1e-22
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...   109   3e-22
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694...   109   3e-22
ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|2...   108   4e-22
ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|2...   107   2e-21

>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  110 bits (275), Expect = 1e-22
 Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 3/182 (1%)
 Frame = +1

Query: 1   IDPAESQSNSGGNTWDLSMIEFGECLQSLGISDLRYTGCYHTWWNSSPNSTTVRKLDRVL 180
           +DP ++  ++GG+     M EF ECL +  ISDL + G ++TWWN+  N+   +K+DR+L
Sbjct: 148 LDPVDA--STGGSRITRGMEEFRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDRIL 205

Query: 181 VNCHWHQQFPHSLANFLTRGLSDHSPSAVSLGIPIQKVKKPFQFFNYLISEPEFLHEVAC 360
           VN  W    P S  +F     SDH PS V++        KPF+  N+L+  PEF+ ++  
Sbjct: 206 VNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRV 265

Query: 361 AWD-ISVTGSHWFVLSTKLKNVKQATIALNNKK--GNLDNLICKAREDLLAFQSILPSLP 531
            WD ++  GS  F LS K K +K  TI   N++    L+  + +A ++L   Q+ L + P
Sbjct: 266 TWDRLAYQGSAMFTLSKKSKFLK-GTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAP 324

Query: 532 SA 537
           S+
Sbjct: 325 SS 326


>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
           predicted protein [Populus trichocarpa]
          Length = 819

 Score =  109 bits (272), Expect = 3e-22
 Identities = 56/139 (40%), Positives = 78/139 (56%)
 Frame = +1

Query: 13  ESQSNSGGNTWDLSMIEFGECLQSLGISDLRYTGCYHTWWNSSPNSTTVRKLDRVLVNCH 192
           +S    G  TW  +M     C++   + DLRY+G ++TW N  P +  +RKLDRVLVN  
Sbjct: 525 QSDRLGGSTTWAGTMDRLDTCIREAKVDDLRYSGMHYTWSNQCPENLIMRKLDRVLVNEK 584

Query: 193 WHQQFPHSLANFLTRGLSDHSPSAVSLGIPIQKVKKPFQFFNYLISEPEFLHEVACAWDI 372
           W+ +FP S A FL  G+SDHSP  V +    Q  KKPF+FF+  +   EF+  V   WD 
Sbjct: 585 WNLKFPLSEARFLPSGMSDHSPMVVKVIGNDQNKKKPFRFFDMWMDHDEFMPLVKKVWDQ 644

Query: 373 SVTGSHWFVLSTKLKNVKQ 429
           +  G   + L  KL+ +KQ
Sbjct: 645 NSRGCPMYQLCCKLRKLKQ 663


>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
           putative protein [Arabidopsis thaliana]
          Length = 1141

 Score =  109 bits (272), Expect = 3e-22
 Identities = 64/167 (38%), Positives = 88/167 (52%), Gaps = 2/167 (1%)
 Frame = +1

Query: 46  DLSMIEFGECLQSLGISDLRYTGCYHTWWNSSPNSTTVRKLDRVLVNCHWHQQFPHSLAN 225
           D  + +F ECL    +SDL Y G   TWWN S      +K+DR+LVN  W   FP S   
Sbjct: 155 DRRIRDFRECLLDAELSDLVYKGSSFTWWNKSKTRPVAKKIDRILVNESWSNLFPSSFGL 214

Query: 226 FLTRGLSDHSPSAVSLGIPIQKVKKPFQFFNYLISEPEFLHEVACAW-DISVTGSHWFVL 402
           F     SDH+   V L +   K K+PF+FFN+L+  PEFL+ V   W   +V GS  F +
Sbjct: 215 FGPPDFSDHASCGVVLELDPIKAKRPFKFFNFLLKNPEFLNLVWDVWYSTNVVGSSMFRV 274

Query: 403 STKLKNVKQATIALNN-KKGNLDNLICKAREDLLAFQSILPSLPSAQ 540
           S KLK +K+     +     NL+    +A E LL+FQ++    PS +
Sbjct: 275 SKKLKALKKPIKDFSRLNYSNLEKRTEEAHETLLSFQNLTLDNPSLE 321


>ref|XP_002319850.1| predicted protein [Populus trichocarpa] gi|222858226|gb|EEE95773.1|
            predicted protein [Populus trichocarpa]
          Length = 809

 Score =  108 bits (271), Expect = 4e-22
 Identities = 55/138 (39%), Positives = 78/138 (56%)
 Frame = +1

Query: 13   ESQSNSGGNTWDLSMIEFGECLQSLGISDLRYTGCYHTWWNSSPNSTTVRKLDRVLVNCH 192
            +S    G  TW  +M     C++   + DLRY+G ++TW N  P +  +RKLDRVLVN  
Sbjct: 672  QSDRLGGSTTWAGTMDRLDTCIREAKVDDLRYSGMHYTWSNQCPENLIMRKLDRVLVNEK 731

Query: 193  WHQQFPHSLANFLTRGLSDHSPSAVSLGIPIQKVKKPFQFFNYLISEPEFLHEVACAWDI 372
            W+ +FP S A FL  G+SDHSP  V +    Q +KKPF+FF+  +   EF+  V   WD 
Sbjct: 732  WNLKFPLSEARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQ 791

Query: 373  SVTGSHWFVLSTKLKNVK 426
            +  G   + L  KL+ +K
Sbjct: 792  NSGGCPMYQLCCKLRKLK 809


>ref|XP_002332412.1| predicted protein [Populus trichocarpa] gi|222832345|gb|EEE70822.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score =  107 bits (266), Expect = 2e-21
 Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 1/170 (0%)
 Frame = +1

Query: 13  ESQSNSGGNTWDLSMIEFGECLQSLGISDLRYTGCYHTWWNSSPNSTTVRKLDRVLVNCH 192
           +S    G  TW  +M     C++   + DL Y+G ++TW N  P +  +RKLDRVLVN  
Sbjct: 148 QSDKLGGSTTWAGTMHRLDTCIREAKVDDLWYSGMHYTWSNQCPENLIMRKLDRVLVNEK 207

Query: 193 WHQQFPHSLANFLTRGLSDHSPSAVSLGIPIQKVKKPFQFFNYLISEPEFLHEVACAWDI 372
           W+  FP S A FL  G+SDHSP  V +    Q +KKPF+FF+  +   EF+  V   WD 
Sbjct: 208 WNLNFPLSEARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQ 267

Query: 373 SVTGSHWFVLSTKLKNVKQATIALNNKK-GNLDNLICKAREDLLAFQSIL 519
           +  G   + L  KL+  KQ     N     N+ + +  A+ ++   Q  L
Sbjct: 268 NSGGCPMYQLCCKLRKQKQELKLFNMAHFSNISDRVKDAKNEMDKAQQAL 317


Top