BLASTX nr result

ID: Bupleurum21_contig00020205 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00020205
         (559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30685.3| unnamed protein product [Vitis vinifera]               97   2e-18
ref|XP_002266486.1| PREDICTED: protein SCAR3-like [Vitis vinifera]     97   2e-18
ref|XP_002305069.1| predicted protein [Populus trichocarpa] gi|2...    93   3e-17
ref|XP_002522581.1| hypothetical protein RCOM_1015180 [Ricinus c...    86   5e-15
ref|XP_003629765.1| SCAR-like protein [Medicago truncatula] gi|3...    57   2e-06

>emb|CBI30685.3| unnamed protein product [Vitis vinifera]
          Length = 841

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
 Frame = -1

Query: 559  LSHYSESDSEEWEIRESPRCNDNDIYDALWG-NSAESVSSNLDVGRITQGVITNKSGIQN 383
            LSH+SES+SE+WE  E+    D+++YDAL   +S ESVSS+ ++  +  G I   SG   
Sbjct: 575  LSHHSESNSEQWECGETLINKDHELYDALCRISSTESVSSSQELEGVAHGTIRADSGHIA 634

Query: 382  LFTDTVMEHSQTDLPNFDILNGSFRKELHSDSETKYQLDSDFSNEXXXXXXXXXPMEWRG 203
               +        DLP+FD +N   ++E+  DS+ +  L+  +  E         P++WR 
Sbjct: 635  NGVEPSQSGLLLDLPSFDAVNPLLKQEIKDDSDPRVLLEVQYPKESMPPPPPLPPLQWRA 694

Query: 202  MKPNPDMGIVQQVPSIQALEHDFYKKLSTSTISQQPKPAPVK-HDNTEAIACTTNS 38
            +KP+ DM   +Q    +AL+H F  KL  ST SQ  +P   +   N EA AC   S
Sbjct: 695  LKPDSDMAEEKQYVISEALDHLFDLKLLESTDSQHSEPVLARQQQNVEANACKPKS 750


>ref|XP_002266486.1| PREDICTED: protein SCAR3-like [Vitis vinifera]
          Length = 1135

 Score = 97.1 bits (240), Expect = 2e-18
 Identities = 62/176 (35%), Positives = 93/176 (52%), Gaps = 2/176 (1%)
 Frame = -1

Query: 559  LSHYSESDSEEWEIRESPRCNDNDIYDALWG-NSAESVSSNLDVGRITQGVITNKSGIQN 383
            LSH+SES+SE+WE  E+    D+++YDAL   +S ESVSS+ ++  +  G I   SG   
Sbjct: 869  LSHHSESNSEQWECGETLINKDHELYDALCRISSTESVSSSQELEGVAHGTIRADSGHIA 928

Query: 382  LFTDTVMEHSQTDLPNFDILNGSFRKELHSDSETKYQLDSDFSNEXXXXXXXXXPMEWRG 203
               +        DLP+FD +N   ++E+  DS+ +  L+  +  E         P++WR 
Sbjct: 929  NGVEPSQSGLLLDLPSFDAVNPLLKQEIKDDSDPRVLLEVQYPKESMPPPPPLPPLQWRA 988

Query: 202  MKPNPDMGIVQQVPSIQALEHDFYKKLSTSTISQQPKPAPVK-HDNTEAIACTTNS 38
            +KP+ DM   +Q    +AL+H F  KL  ST SQ  +P   +   N EA AC   S
Sbjct: 989  LKPDSDMAEEKQYVISEALDHLFDLKLLESTDSQHSEPVLARQQQNVEANACKPKS 1044


>ref|XP_002305069.1| predicted protein [Populus trichocarpa] gi|222848033|gb|EEE85580.1|
           predicted protein [Populus trichocarpa]
          Length = 298

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 65/189 (34%), Positives = 91/189 (48%), Gaps = 3/189 (1%)
 Frame = -1

Query: 559 LSHYSESDSEEWEIRESPRCNDNDIYDALWGNS-AESVSSNLDVGRITQGVITNKSGIQN 383
           LSH+SESDSE W+  +SP   D+++YDAL   S  ES SS+L  G        N+S    
Sbjct: 39  LSHHSESDSERWDSDDSPESKDHELYDALRRISPVESFSSSLQPGEAG----NNQSTYTE 94

Query: 382 LFTDTVMEHSQTDLPNFDILNGSFRKELHSDSETKYQLDSDFSNEXXXXXXXXXPMEWRG 203
             TD  +  S  DLP FD +N     E   +   + Q + ++  +         P++WR 
Sbjct: 95  NGTDPSLSASSLDLPCFDAMNSVVYGEKKDNLHERNQQELEYLKDSTPLPPPLPPVQWRV 154

Query: 202 MKPNPDMGIVQQVPSIQALEHDFYKKLSTSTISQQPKPAPVKHD--NTEAIACTTNSKHP 29
            KPN D+   +     +  EH F  K   ST+ QQPKP+P      N + IA    SK  
Sbjct: 155 SKPNSDISEGKLHALSEGHEHGFDIKPLESTVPQQPKPSPADDHKMNEDTIAFKPKSKEQ 214

Query: 28  NGKKLNVKK 2
           + +KLN  K
Sbjct: 215 DQQKLNCHK 223


>ref|XP_002522581.1| hypothetical protein RCOM_1015180 [Ricinus communis]
            gi|223538272|gb|EEF39881.1| hypothetical protein
            RCOM_1015180 [Ricinus communis]
          Length = 1111

 Score = 85.5 bits (210), Expect = 5e-15
 Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 5/171 (2%)
 Frame = -1

Query: 559  LSHYSESDSEEWEIRESPRCNDNDIYDALWG-NSAESVSSNLDVGRITQGVITNKSGIQN 383
            LSH+S+SDSE+WE  ESP   D+++YD+L      ESVSS+L    +    I   SG+++
Sbjct: 846  LSHHSDSDSEKWESDESPENKDHELYDSLCRIPPVESVSSSLQPTEMGNDGIHMNSGLKS 905

Query: 382  LFT----DTVMEHSQTDLPNFDILNGSFRKELHSDSETKYQLDSDFSNEXXXXXXXXXPM 215
            L++    D+ +  S  DLP+FD +N     +   + E +  ++S +S +         P+
Sbjct: 906  LYSENGADSSLSSSLLDLPSFDAMNPVILGKSKDNLEQRNYIESQYSEDPNPSPPPPPPV 965

Query: 214  EWRGMKPNPDMGIVQQVPSIQALEHDFYKKLSTSTISQQPKPAPVKHDNTE 62
            +W   K    M   +Q  + +  +H    KLS   +SQQ KPAP     T+
Sbjct: 966  QWWATKATAYMAQDKQKTTPEVHKHPVDLKLSEFPVSQQHKPAPANEKQTD 1016


>ref|XP_003629765.1| SCAR-like protein [Medicago truncatula] gi|355523787|gb|AET04241.1|
            SCAR-like protein [Medicago truncatula]
          Length = 1210

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 13/195 (6%)
 Frame = -1

Query: 547  SESDSEEWEIRESPRCNDNDIYDALW-GNSAESVSSNLDVGRITQGVITNKSGIQNLFTD 371
            S+ DS++WE  E+P  +D+ I+D+    +SAES  S  + GR++     N + + N   +
Sbjct: 944  SDYDSDQWESDETPESSDHGIHDSPHRSSSAESSLSTKEHGRLS----NNDTDLNNEHMN 999

Query: 370  TV---MEHSQTDLPNFDILNGSFRKELHSDSETKYQLDSDFSNE--XXXXXXXXXPMEWR 206
             V   +  S  D P+F+ +N    KE +   E    + S    E           P +WR
Sbjct: 1000 GVEPSLSGSLLDFPSFENVNPVHEKESNRHHECNKDVTSHSHAEPTRPPPPPPVPPTQWR 1059

Query: 205  GMKPNPDMGIVQQVPSIQALEHDFYKKLSTSTISQQPKPAPVK-----HDNTEAIACTTN 41
              KP  D     Q    +  EH   + L  STI QQP+ A V+     HD  E+     N
Sbjct: 1060 VTKPQLDKSNETQNSMSEDAEHLSDQNLPESTIFQQPRHAKVEKIQRNHDGFESYDAIIN 1119

Query: 40   S-KHPNG-KKLNVKK 2
              K   G  KLNV+K
Sbjct: 1120 KLKEKLGPPKLNVQK 1134


Top