BLASTX nr result

ID: Bupleurum21_contig00020109 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00020109
         (626 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001047683.1| Os02g0668000 [Oryza sativa Japonica Group] g...   120   2e-25
gb|EAY87006.1| hypothetical protein OsI_08401 [Oryza sativa Indi...   120   3e-25
gb|AAG51988.1|AC024260_26 unknown protein, 5' partial; 111936-11...   119   3e-25
ref|NP_175752.1| mechanosensitive channel of small conductance-l...   119   3e-25
ref|XP_004140046.1| PREDICTED: mechanosensitive ion channel prot...   119   4e-25

>ref|NP_001047683.1| Os02g0668000 [Oryza sativa Japonica Group]
            gi|50252134|dbj|BAD28130.1| mechanosensitive ion channel
            domain-containing protein-like [Oryza sativa Japonica
            Group] gi|113537214|dbj|BAF09597.1| Os02g0668000 [Oryza
            sativa Japonica Group] gi|125583192|gb|EAZ24123.1|
            hypothetical protein OsJ_07862 [Oryza sativa Japonica
            Group] gi|215678828|dbj|BAG95265.1| unnamed protein
            product [Oryza sativa Japonica Group]
          Length = 974

 Score =  120 bits (301), Expect = 2e-25
 Identities = 51/91 (56%), Positives = 71/91 (78%)
 Frame = -1

Query: 560  YIDNKKDHWCPNALLVTRDIDQLNRIKISMWPTHKMNHQNMVERYNRRSLLVDEIIKVVK 381
            YIDNKKDHW P A++V RD+D  N++K+S+W  H +N Q+M  R+ RR L++ E+IKV+K
Sbjct: 882  YIDNKKDHWYPGAMIVLRDVDDTNKLKVSIWLRHTLNWQDMGMRFVRRELVLQEMIKVLK 941

Query: 380  ELGIEYQLYPLDINIRNMADINSTRMPSTWN 288
            +L IEY++ PLD+N+RN   I STRMP+TWN
Sbjct: 942  DLDIEYRMLPLDVNVRNAPPIQSTRMPTTWN 972


>gb|EAY87006.1| hypothetical protein OsI_08401 [Oryza sativa Indica Group]
          Length = 972

 Score =  120 bits (300), Expect = 3e-25
 Identities = 51/91 (56%), Positives = 71/91 (78%)
 Frame = -1

Query: 560  YIDNKKDHWCPNALLVTRDIDQLNRIKISMWPTHKMNHQNMVERYNRRSLLVDEIIKVVK 381
            YIDNKKDHW P A++V RD+D  N++K+S+W  H +N Q+M  R+ RR L++ E+IKV+K
Sbjct: 880  YIDNKKDHWYPGAMVVLRDVDDTNKLKVSIWLRHTLNWQDMGMRFVRRELVLQEMIKVLK 939

Query: 380  ELGIEYQLYPLDINIRNMADINSTRMPSTWN 288
            +L IEY++ PLD+N+RN   I STRMP+TWN
Sbjct: 940  DLDIEYRMLPLDVNVRNAPPIQSTRMPTTWN 970


>gb|AAG51988.1|AC024260_26 unknown protein, 5' partial; 111936-110607 [Arabidopsis thaliana]
          Length = 327

 Score =  119 bits (299), Expect = 3e-25
 Identities = 54/95 (56%), Positives = 74/95 (77%), Gaps = 3/95 (3%)
 Frame = -1

Query: 563 SYIDNKKDHWCPNALLVTRDIDQLNRIKISMWPTHKMNHQNMVERYNRRSLLVDEIIKVV 384
           SY+DNKKDHW P+ ++V RD+  LN +KI+MWPTHKMNHQNM ERY RR  L++EI ++ 
Sbjct: 228 SYVDNKKDHWHPSPMIVFRDMCGLNSVKIAMWPTHKMNHQNMGERYVRRGQLLEEIGRLC 287

Query: 383 KELGIEYQLYPLDINIRNM---ADINSTRMPSTWN 288
           +EL IEY+LYPL+IN++++     I S R+P +WN
Sbjct: 288 RELDIEYRLYPLNINVKSLPAATPITSDRIPPSWN 322


>ref|NP_175752.1| mechanosensitive channel of small conductance-like 4 [Arabidopsis
            thaliana] gi|75176759|sp|Q9LPG3.1|MSL4_ARATH RecName:
            Full=Mechanosensitive ion channel protein 4; AltName:
            Full=Mechanosensitive channel of small conductance-like
            4; AltName: Full=MscS-Like protein 4
            gi|8671879|gb|AAF78442.1|AC018748_21 Contains similarity
            to a putative protein T30F21.6 gi|4836872 from
            Arabidopsis thaliana BAC T30F21 gb|AC007260 and contains
            an uncharacterized protein PF|00924 family [Arabidopsis
            thaliana] gi|332194824|gb|AEE32945.1| mechanosensitive
            channel of small conductance-like 4 [Arabidopsis
            thaliana]
          Length = 881

 Score =  119 bits (299), Expect = 3e-25
 Identities = 54/95 (56%), Positives = 74/95 (77%), Gaps = 3/95 (3%)
 Frame = -1

Query: 563  SYIDNKKDHWCPNALLVTRDIDQLNRIKISMWPTHKMNHQNMVERYNRRSLLVDEIIKVV 384
            SY+DNKKDHW P+ ++V RD+  LN +KI+MWPTHKMNHQNM ERY RR  L++EI ++ 
Sbjct: 782  SYVDNKKDHWHPSPMIVFRDMCGLNSVKIAMWPTHKMNHQNMGERYVRRGQLLEEIGRLC 841

Query: 383  KELGIEYQLYPLDINIRNM---ADINSTRMPSTWN 288
            +EL IEY+LYPL+IN++++     I S R+P +WN
Sbjct: 842  RELDIEYRLYPLNINVKSLPAATPITSDRIPPSWN 876


>ref|XP_004140046.1| PREDICTED: mechanosensitive ion channel protein 8-like [Cucumis
            sativus]
          Length = 923

 Score =  119 bits (298), Expect = 4e-25
 Identities = 46/88 (52%), Positives = 75/88 (85%)
 Frame = -1

Query: 563  SYIDNKKDHWCPNALLVTRDIDQLNRIKISMWPTHKMNHQNMVERYNRRSLLVDEIIKVV 384
            SYI+ KK+HWCP  ++V +D+++LNR++I++W TH+MNHQ+M ER+ RR+LLV+E++K+ 
Sbjct: 834  SYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIF 893

Query: 383  KELGIEYQLYPLDINIRNMADINSTRMP 300
            +EL ++Y+L PLDIN+R++  +NST +P
Sbjct: 894  QELDLQYRLLPLDINVRSLPPVNSTNLP 921


Top